Wall clock time and date at job start Mon Mar 30 2020 01:26:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47365 * 2 1 4 4 C 1.50702 * 109.47042 * 120.00245 * 2 1 3 5 5 C 1.33126 * 120.00061 * 120.00131 * 4 2 1 6 6 C 1.46948 * 119.99995 * 180.02562 * 5 4 2 7 7 O 1.21649 * 120.00194 * 359.97438 * 6 5 4 8 8 N 1.34776 * 119.99887 * 179.97438 * 6 5 4 9 9 C 1.36827 * 119.99973 * 359.97438 * 8 6 5 10 10 H 1.07997 * 120.00001 * 322.06056 * 9 8 6 11 11 C 1.39074 * 119.99476 * 142.05715 * 9 8 6 12 12 N 1.31346 * 120.00830 * 339.73730 * 11 9 8 13 13 Si 1.86807 * 119.99618 * 159.73606 * 11 9 8 14 14 H 1.48501 * 109.46878 * 90.00115 * 13 11 9 15 15 H 1.48500 * 109.47201 * 209.99847 * 13 11 9 16 16 H 1.48502 * 109.47068 * 330.00380 * 13 11 9 17 17 C 1.46501 * 120.00100 * 179.97438 * 8 6 5 18 18 C 1.50695 * 109.47212 * 84.46041 * 17 8 6 19 19 C 1.38231 * 120.00472 * 84.75352 * 18 17 8 20 20 C 1.38233 * 120.00739 * 179.97438 * 19 18 17 21 21 C 1.38234 * 119.99524 * 0.07128 * 20 19 18 22 22 C 1.38241 * 120.00271 * 359.90659 * 21 20 19 23 23 C 1.38236 * 119.99848 * 264.73478 * 18 17 8 24 24 H 1.08999 * 109.47158 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47073 * 299.99657 * 1 2 3 26 26 H 1.08997 * 109.47076 * 59.99652 * 1 2 3 27 27 H 1.09007 * 109.46834 * 240.00106 * 2 1 3 28 28 H 1.08997 * 109.47083 * 180.02562 * 3 2 1 29 29 H 1.08998 * 109.46826 * 299.99996 * 3 2 1 30 30 H 1.08999 * 109.46745 * 60.00142 * 3 2 1 31 31 H 1.07994 * 120.00123 * 299.99629 * 4 2 1 32 32 H 1.08007 * 119.99586 * 359.97438 * 5 4 2 33 33 H 0.96998 * 120.00369 * 180.02562 * 12 11 9 34 34 H 1.08997 * 109.46825 * 324.45672 * 17 8 6 35 35 H 1.09003 * 109.47187 * 204.46284 * 17 8 6 36 36 H 1.08006 * 119.99550 * 359.69883 * 19 18 17 37 37 H 1.07991 * 120.00480 * 179.97438 * 20 19 18 38 38 H 1.07998 * 120.00078 * 179.97438 * 21 20 19 39 39 H 1.08000 * 120.00271 * 180.02562 * 22 21 20 40 40 H 1.07999 * 120.00316 * 359.97438 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7105 1.2305 5 6 2.7977 -1.7928 1.1083 6 6 3.2870 -2.4859 2.3081 7 8 2.9931 -2.0704 3.4130 8 7 4.0615 -3.5820 2.1844 9 6 4.3916 -4.0497 0.9416 10 1 3.6656 -4.0190 0.1427 11 6 5.6621 -4.5645 0.7074 12 7 6.6544 -4.2557 1.5107 13 14 5.9575 -5.6955 -0.7497 14 1 6.3378 -4.8862 -1.9353 15 1 7.0532 -6.6442 -0.4259 16 1 4.7164 -6.4551 -1.0464 17 6 4.5498 -4.2727 3.3805 18 6 3.4977 -5.2341 3.8701 19 6 3.4143 -6.5027 3.3275 20 6 2.4496 -7.3848 3.7770 21 6 1.5673 -6.9978 4.7682 22 6 1.6509 -5.7293 5.3113 23 6 2.6162 -4.8475 4.8623 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 1.8933 -0.5139 -0.8901 28 1 3.1300 1.4424 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.7715 -0.3415 2.2113 32 1 3.0583 -2.1620 0.1273 33 1 7.5406 -4.6145 1.3470 34 1 4.7649 -3.5416 4.1598 35 1 5.4591 -4.8223 3.1370 36 1 4.1001 -6.8032 2.5491 37 1 2.3842 -8.3758 3.3527 38 1 0.8133 -7.6867 5.1191 39 1 0.9618 -5.4270 6.0860 40 1 2.6817 -3.8566 5.2869 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001142659853.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:02 Heat of formation + Delta-G solvation = -18.140818 kcal Electronic energy + Delta-G solvation = -20793.476291 eV Core-core repulsion = 17765.527356 eV Total energy + Delta-G solvation = -3027.948935 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.81039 -39.59210 -37.41470 -36.63578 -33.75836 -32.79951 -31.71329 -31.65254 -27.93966 -27.72042 -26.66344 -24.00413 -23.35848 -22.13052 -21.03816 -20.46902 -18.71294 -18.01472 -17.34701 -16.73405 -16.31907 -16.03749 -15.78189 -15.44868 -15.18419 -15.05895 -14.45092 -14.22318 -14.11987 -13.77534 -13.67219 -13.23467 -13.16921 -13.01894 -12.99411 -12.65431 -12.47767 -12.13925 -12.09682 -12.00258 -11.90288 -11.75211 -11.61942 -11.08908 -10.45364 -10.16809 -9.76058 -9.59035 -9.47821 -8.34435 -6.07338 0.48009 0.56196 0.68263 1.42847 1.46478 1.57992 2.28056 2.58006 2.80784 3.12426 3.23697 3.95599 4.02639 4.03499 4.12456 4.22490 4.33916 4.35716 4.38413 4.47064 4.65608 4.72288 4.76882 4.84580 4.88157 4.94066 5.00768 5.12374 5.19728 5.20886 5.25139 5.32409 5.42441 5.42946 5.63033 5.64104 5.70478 5.73561 5.87733 6.00270 6.19924 6.38965 7.09323 7.56919 8.01311 8.69606 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.011697 B = 0.007075 C = 0.005066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2393.189404 B = 3956.561978 C = 5525.632878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.068 4.068 3 C -0.139 4.139 4 C -0.081 4.081 5 C -0.195 4.195 6 C 0.479 3.521 7 O -0.637 6.637 8 N -0.433 5.433 9 C -0.351 4.351 10 H 0.094 0.906 11 C 0.007 3.993 12 N -0.890 5.890 13 Si 0.978 3.022 14 H -0.270 1.270 15 H -0.278 1.278 16 H -0.259 1.259 17 C 0.157 3.843 18 C -0.104 4.104 19 C -0.114 4.114 20 C -0.126 4.126 21 C -0.122 4.122 22 C -0.129 4.129 23 C -0.120 4.120 24 H 0.048 0.952 25 H 0.058 0.942 26 H 0.081 0.919 27 H 0.078 0.922 28 H 0.045 0.955 29 H 0.081 0.919 30 H 0.058 0.942 31 H 0.103 0.897 32 H 0.127 0.873 33 H 0.274 0.726 34 H 0.034 0.966 35 H 0.095 0.905 36 H 0.110 0.890 37 H 0.148 0.852 38 H 0.156 0.844 39 H 0.142 0.858 40 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.165 -0.918 -2.290 9.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.087 4.087 3 C -0.196 4.196 4 C -0.102 4.102 5 C -0.215 4.215 6 C 0.271 3.729 7 O -0.527 6.527 8 N -0.148 5.148 9 C -0.478 4.478 10 H 0.111 0.889 11 C -0.197 4.197 12 N -0.527 5.527 13 Si 0.801 3.199 14 H -0.195 1.195 15 H -0.204 1.204 16 H -0.183 1.183 17 C 0.033 3.967 18 C -0.106 4.106 19 C -0.133 4.133 20 C -0.143 4.143 21 C -0.140 4.140 22 C -0.147 4.147 23 C -0.139 4.139 24 H 0.067 0.933 25 H 0.077 0.923 26 H 0.099 0.901 27 H 0.097 0.903 28 H 0.064 0.936 29 H 0.100 0.900 30 H 0.077 0.923 31 H 0.121 0.879 32 H 0.145 0.855 33 H 0.084 0.916 34 H 0.053 0.947 35 H 0.113 0.887 36 H 0.128 0.872 37 H 0.166 0.834 38 H 0.174 0.826 39 H 0.160 0.840 40 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -9.038 -0.793 -1.737 9.238 hybrid contribution 0.932 -0.298 -0.356 1.041 sum -8.107 -1.091 -2.093 8.443 Atomic orbital electron populations 1.21764 0.92833 1.01934 1.02956 1.20382 0.97185 0.96694 0.94411 1.21774 1.00692 0.94210 1.02971 1.23730 0.93145 0.93436 0.99848 1.22701 1.02085 0.98829 0.97881 1.19268 0.83025 0.80927 0.89631 1.90537 1.64593 1.68627 1.28971 1.43467 1.43668 1.21678 1.05982 1.19629 0.97525 1.42355 0.88298 0.88857 1.26221 0.93995 0.98583 1.00878 1.70017 1.01091 1.41193 1.40390 0.85178 0.78465 0.78321 0.77986 1.19539 1.20362 1.18293 1.20156 0.96128 0.93319 0.87053 1.20435 0.98178 0.95379 0.96563 1.21123 0.99575 0.93384 0.99199 1.21425 0.95039 1.00120 0.97743 1.21461 0.99500 0.96311 0.96697 1.21392 0.98144 0.94274 1.00843 1.21188 0.96012 0.99274 0.97439 0.93305 0.92310 0.90051 0.90334 0.93619 0.90010 0.92273 0.87902 0.85523 0.91645 0.94701 0.88746 0.87169 0.83429 0.82633 0.84002 0.87985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.03 9.18 71.98 0.66 -2.37 16 2 C -0.07 -1.83 3.22 -11.54 -0.04 -1.86 16 3 C -0.14 -3.19 9.18 71.98 0.66 -2.53 16 4 C -0.08 -2.97 8.35 24.54 0.20 -2.77 16 5 C -0.19 -8.57 8.89 23.40 0.21 -8.36 16 6 C 0.48 25.31 7.53 86.52 0.65 25.96 16 7 O -0.64 -35.96 15.17 -4.19 -0.06 -36.02 16 8 N -0.43 -23.06 2.51 -643.89 -1.62 -24.67 16 9 C -0.35 -18.09 8.43 84.11 0.71 -17.38 16 10 H 0.09 4.62 6.79 -2.91 -0.02 4.60 16 11 C 0.01 0.34 4.93 84.97 0.42 0.76 16 12 N -0.89 -47.66 11.50 21.68 0.25 -47.41 16 13 Si 0.98 38.97 29.60 68.60 2.03 41.00 16 14 H -0.27 -10.49 7.11 99.48 0.71 -9.79 16 15 H -0.28 -10.93 7.11 99.48 0.71 -10.22 16 16 H -0.26 -9.91 7.11 99.48 0.71 -9.21 16 17 C 0.16 8.12 5.01 85.63 0.43 8.55 16 18 C -0.10 -4.72 5.42 -19.87 -0.11 -4.82 16 19 C -0.11 -4.57 9.72 22.27 0.22 -4.35 16 20 C -0.13 -3.96 10.05 22.27 0.22 -3.73 16 21 C -0.12 -3.49 10.05 22.27 0.22 -3.27 16 22 C -0.13 -4.23 10.05 22.27 0.22 -4.00 16 23 C -0.12 -5.03 9.40 22.27 0.21 -4.82 16 24 H 0.05 1.14 8.14 -2.39 -0.02 1.13 16 25 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 26 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.08 2.07 7.81 -2.38 -0.02 2.05 16 28 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.06 1.30 8.14 -2.39 -0.02 1.29 16 31 H 0.10 4.06 7.49 -2.91 -0.02 4.03 16 32 H 0.13 5.37 6.34 -2.91 -0.02 5.35 16 33 H 0.27 13.72 8.31 -92.71 -0.77 12.95 16 34 H 0.03 1.91 7.50 -2.39 -0.02 1.89 16 35 H 0.09 5.10 5.56 -2.39 -0.01 5.09 16 36 H 0.11 4.53 8.06 -2.91 -0.02 4.51 16 37 H 0.15 3.60 8.06 -2.91 -0.02 3.58 16 38 H 0.16 3.14 8.06 -2.91 -0.02 3.11 16 39 H 0.14 3.75 8.06 -2.91 -0.02 3.73 16 40 H 0.10 4.61 7.61 -2.91 -0.02 4.58 16 Total: -1.00 -64.81 337.99 6.50 -58.31 By element: Atomic # 1 Polarization: 32.80 SS G_CDS: 1.01 Total: 33.81 kcal Atomic # 6 Polarization: -29.90 SS G_CDS: 4.89 Total: -25.01 kcal Atomic # 7 Polarization: -70.72 SS G_CDS: -1.37 Total: -72.08 kcal Atomic # 8 Polarization: -35.96 SS G_CDS: -0.06 Total: -36.02 kcal Atomic # 14 Polarization: 38.97 SS G_CDS: 2.03 Total: 41.00 kcal Total: -64.81 6.50 -58.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001142659853.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.165 kcal (2) G-P(sol) polarization free energy of solvation -64.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds