Wall clock time and date at job start Mon Mar 30 2020 01:11:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32999 * 1 3 3 C 1.50698 * 119.99822 * 2 1 4 4 C 1.50707 * 109.47247 * 94.99599 * 3 2 1 5 5 C 1.38238 * 119.99792 * 89.99994 * 4 3 2 6 6 C 1.38235 * 119.99712 * 179.97438 * 5 4 3 7 7 C 1.38234 * 120.00220 * 359.97124 * 6 5 4 8 8 C 1.38233 * 120.00037 * 0.28719 * 7 6 5 9 9 C 1.38234 * 120.00179 * 269.97930 * 4 3 2 10 10 C 1.47101 * 120.00266 * 179.97438 * 2 1 3 11 11 O 1.21613 * 119.99794 * 0.02562 * 10 2 1 12 12 N 1.34773 * 120.00002 * 180.02562 * 10 2 1 13 13 C 1.46498 * 119.99743 * 180.02562 * 12 10 2 14 14 C 1.53000 * 109.47068 * 180.02562 * 13 12 10 15 15 C 1.53011 * 109.46996 * 180.02562 * 14 13 12 16 16 C 1.50695 * 109.46776 * 180.02562 * 15 14 13 17 17 H 1.08001 * 120.00347 * 0.02562 * 16 15 14 18 18 C 1.37882 * 120.00203 * 179.97438 * 16 15 14 19 19 N 1.31517 * 119.99577 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00291 * 179.97438 * 18 16 15 21 21 H 1.48493 * 109.46991 * 90.00259 * 20 18 16 22 22 H 1.48500 * 109.46900 * 210.00247 * 20 18 16 23 23 H 1.48494 * 109.47264 * 330.00102 * 20 18 16 24 24 H 1.07997 * 119.99684 * 179.97438 * 1 2 3 25 25 H 1.08003 * 119.99811 * 0.02562 * 1 2 3 26 26 H 1.09005 * 109.47656 * 334.99908 * 3 2 1 27 27 H 1.09000 * 109.47265 * 214.99216 * 3 2 1 28 28 H 1.08005 * 120.00068 * 359.97438 * 5 4 3 29 29 H 1.07999 * 119.99770 * 179.97438 * 6 5 4 30 30 H 1.08002 * 119.99744 * 180.02562 * 7 6 5 31 31 H 1.07998 * 120.00395 * 179.72811 * 8 7 6 32 32 H 1.07999 * 119.99968 * 359.97438 * 9 4 3 33 33 H 0.96992 * 119.99945 * 0.02562 * 12 10 2 34 34 H 1.08996 * 109.47330 * 300.00416 * 13 12 10 35 35 H 1.09005 * 109.47268 * 60.00359 * 13 12 10 36 36 H 1.08996 * 109.47380 * 300.00379 * 14 13 12 37 37 H 1.09001 * 109.46960 * 60.00796 * 14 13 12 38 38 H 1.09001 * 109.47148 * 299.99938 * 15 14 13 39 39 H 1.08992 * 109.46781 * 60.00452 * 15 14 13 40 40 H 0.96996 * 120.00346 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3300 0.0000 0.0000 3 6 2.0834 1.3051 0.0000 4 6 2.4418 1.6783 1.4155 5 6 3.6390 1.2532 1.9603 6 6 3.9679 1.5960 3.2585 7 6 3.0999 2.3644 4.0116 8 6 1.9004 2.7850 3.4685 9 6 1.5735 2.4461 2.1688 10 6 2.0656 -1.2739 0.0006 11 8 1.4575 -2.3271 0.0006 12 7 3.4133 -1.2738 0.0011 13 6 4.1458 -2.5425 0.0011 14 6 5.6500 -2.2630 0.0024 15 6 6.4150 -3.5881 0.0017 16 6 7.8966 -3.3126 0.0036 17 1 8.2566 -2.2944 0.0056 18 6 8.7927 -4.3606 0.0040 19 7 8.3543 -5.6005 0.0021 20 14 10.6292 -4.0192 0.0056 21 1 11.1147 -3.9293 1.4061 22 1 11.3380 -5.1205 -0.6943 23 1 10.8949 -2.7364 -0.6937 24 1 -0.5399 -0.9353 -0.0004 25 1 -0.5400 0.9353 -0.0004 26 1 1.4585 2.0855 -0.4343 27 1 2.9942 1.1989 -0.5893 28 1 4.3174 0.6532 1.3718 29 1 4.9031 1.2635 3.6843 30 1 3.3572 2.6325 5.0257 31 1 1.2202 3.3816 4.0583 32 1 0.6385 2.7789 1.7428 33 1 3.8982 -0.4338 0.0015 34 1 3.8821 -3.1144 0.8908 35 1 3.8828 -3.1139 -0.8892 36 1 5.9140 -1.6909 -0.8871 37 1 5.9126 -1.6919 0.8929 38 1 6.1511 -4.1604 0.8910 39 1 6.1524 -4.1587 -0.8889 40 1 8.9846 -6.3378 0.0027 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001144407913.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:57 Heat of formation + Delta-G solvation = -35.440541 kcal Electronic energy + Delta-G solvation = -20005.727308 eV Core-core repulsion = 16977.028201 eV Total energy + Delta-G solvation = -3028.699107 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.12369 -39.91562 -37.08284 -36.02024 -35.19298 -32.98548 -32.04562 -31.71583 -28.80911 -27.38022 -25.57851 -23.49930 -23.37221 -22.46593 -22.18241 -20.00606 -18.56106 -18.13490 -17.37260 -17.04726 -16.69958 -16.45466 -16.11674 -15.85315 -15.40148 -15.16028 -14.61352 -14.32413 -14.18419 -14.11209 -13.77012 -13.54910 -13.49023 -13.13666 -12.76578 -12.62615 -12.55005 -12.39705 -12.08654 -11.80514 -11.71876 -11.59959 -11.27059 -10.92864 -10.56611 -10.47694 -10.08749 -9.77902 -9.56760 -8.20436 -6.32187 0.33297 0.53661 0.57286 1.41134 1.42576 1.53595 2.18360 2.26184 2.42210 2.91186 3.13360 3.69197 3.95745 3.96491 4.00059 4.14542 4.16108 4.20630 4.33743 4.40949 4.50050 4.66341 4.74284 4.81497 4.87419 4.89622 4.95211 5.11879 5.14881 5.18770 5.31885 5.37446 5.47352 5.52044 5.61146 5.67262 5.67842 5.72725 5.82039 6.16483 6.20543 6.51849 6.84905 7.17879 7.37502 8.91809 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.018572 B = 0.003818 C = 0.003302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.309142 B = 7332.251455 C = 8478.316749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.188 4.188 3 C -0.040 4.040 4 C -0.089 4.089 5 C -0.136 4.136 6 C -0.134 4.134 7 C -0.134 4.134 8 C -0.125 4.125 9 C -0.118 4.118 10 C 0.539 3.461 11 O -0.595 6.595 12 N -0.711 5.711 13 C 0.127 3.873 14 C -0.102 4.102 15 C 0.025 3.975 16 C -0.541 4.541 17 H 0.067 0.933 18 C -0.003 4.003 19 N -0.935 5.935 20 Si 0.968 3.032 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.260 1.260 24 H 0.099 0.901 25 H 0.158 0.842 26 H 0.121 0.879 27 H 0.083 0.917 28 H 0.114 0.886 29 H 0.124 0.876 30 H 0.135 0.865 31 H 0.144 0.856 32 H 0.148 0.852 33 H 0.409 0.591 34 H 0.048 0.952 35 H 0.052 0.948 36 H 0.068 0.932 37 H 0.066 0.934 38 H -0.009 1.009 39 H -0.007 1.007 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.930 21.793 3.586 26.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.191 4.191 3 C -0.077 4.077 4 C -0.089 4.089 5 C -0.154 4.154 6 C -0.152 4.152 7 C -0.152 4.152 8 C -0.143 4.143 9 C -0.135 4.135 10 C 0.329 3.671 11 O -0.478 6.478 12 N -0.364 5.364 13 C 0.003 3.997 14 C -0.140 4.140 15 C -0.013 4.013 16 C -0.579 4.579 17 H 0.085 0.915 18 C -0.200 4.200 19 N -0.575 5.575 20 Si 0.792 3.208 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.184 1.184 24 H 0.118 0.882 25 H 0.176 0.824 26 H 0.139 0.861 27 H 0.101 0.899 28 H 0.132 0.868 29 H 0.142 0.858 30 H 0.153 0.847 31 H 0.162 0.838 32 H 0.166 0.834 33 H 0.248 0.752 34 H 0.066 0.934 35 H 0.070 0.930 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.010 0.990 39 H 0.011 0.989 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -15.254 20.882 3.574 26.106 hybrid contribution 1.424 -0.543 0.122 1.529 sum -13.829 20.339 3.696 24.871 Atomic orbital electron populations 1.24910 0.93855 1.04533 0.88140 1.21479 0.96122 0.92440 1.09021 1.19675 1.01270 0.93684 0.93032 1.19932 0.94501 0.98054 0.96406 1.21253 0.97425 1.00381 0.96317 1.21379 1.00458 0.98700 0.94663 1.21443 0.94841 0.98259 1.00622 1.21488 0.96960 1.00019 0.95815 1.21337 0.99831 0.97980 0.94374 1.19200 0.82358 0.90308 0.75218 1.90755 1.69177 1.35076 1.52803 1.46091 1.06295 1.09960 1.74016 1.21270 0.92078 0.85624 1.00706 1.21608 0.91159 0.99167 1.02035 1.18931 0.94538 0.92758 0.95074 1.21663 0.92415 0.93259 1.50567 0.91523 1.26027 1.04493 0.94803 0.94712 1.70113 1.36410 0.99389 1.51634 0.85408 0.78743 0.78188 0.78475 1.19805 1.20998 1.18372 0.88220 0.82438 0.86121 0.89891 0.86803 0.85811 0.84663 0.83777 0.83386 0.75186 0.93383 0.92998 0.91311 0.91505 0.99031 0.98882 0.92790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.27 13.90 66.65 0.93 -0.34 16 2 C -0.19 -3.95 5.23 -18.70 -0.10 -4.05 16 3 C -0.04 -0.60 5.03 29.10 0.15 -0.45 16 4 C -0.09 -1.59 5.12 -19.86 -0.10 -1.69 16 5 C -0.14 -2.91 9.47 22.27 0.21 -2.70 16 6 C -0.13 -2.80 10.05 22.27 0.22 -2.58 16 7 C -0.13 -2.35 10.05 22.27 0.22 -2.13 16 8 C -0.13 -1.88 10.05 22.27 0.22 -1.66 16 9 C -0.12 -1.74 9.70 22.27 0.22 -1.52 16 10 C 0.54 16.95 7.75 86.57 0.67 17.62 16 11 O -0.60 -24.02 16.22 -4.07 -0.07 -24.09 16 12 N -0.71 -21.50 5.45 -466.72 -2.54 -24.05 16 13 C 0.13 4.76 5.67 86.38 0.49 5.25 16 14 C -0.10 -4.05 5.27 30.60 0.16 -3.89 16 15 C 0.02 1.30 4.97 29.85 0.15 1.45 16 16 C -0.54 -30.44 9.11 25.60 0.23 -30.20 16 17 H 0.07 3.52 7.74 -2.91 -0.02 3.49 16 18 C 0.00 -0.15 5.46 84.66 0.46 0.31 16 19 N -0.94 -57.55 13.29 21.45 0.28 -57.26 16 20 Si 0.97 43.97 29.54 68.60 2.03 46.00 16 21 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 22 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 23 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 24 H 0.10 2.04 7.49 -2.91 -0.02 2.02 16 25 H 0.16 1.18 8.02 -2.91 -0.02 1.15 16 26 H 0.12 1.04 7.95 -2.38 -0.02 1.03 16 27 H 0.08 1.23 6.91 -2.39 -0.02 1.21 16 28 H 0.11 2.47 5.96 -2.91 -0.02 2.46 16 29 H 0.12 2.44 8.06 -2.91 -0.02 2.42 16 30 H 0.14 1.83 8.06 -2.91 -0.02 1.81 16 31 H 0.14 1.40 8.06 -2.91 -0.02 1.38 16 32 H 0.15 1.29 8.06 -2.91 -0.02 1.26 16 33 H 0.41 10.06 4.35 -92.71 -0.40 9.66 16 34 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.05 2.08 8.14 -2.38 -0.02 2.06 16 36 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 37 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 38 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 39 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 40 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 Total: -1.00 -73.78 340.47 4.45 -69.33 By element: Atomic # 1 Polarization: 16.02 SS G_CDS: 0.62 Total: 16.64 kcal Atomic # 6 Polarization: -30.71 SS G_CDS: 4.14 Total: -26.57 kcal Atomic # 7 Polarization: -79.05 SS G_CDS: -2.26 Total: -81.31 kcal Atomic # 8 Polarization: -24.02 SS G_CDS: -0.07 Total: -24.09 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Total: -73.78 4.45 -69.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001144407913.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.889 kcal (2) G-P(sol) polarization free energy of solvation -73.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds