Wall clock time and date at job start Mon Mar 30 2020 02:39:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.47228 * 2 1 4 4 H 1.08994 * 109.47060 * 305.00014 * 3 2 1 5 5 C 1.50701 * 109.46889 * 185.00245 * 3 2 1 6 6 H 1.07999 * 119.99664 * 239.99860 * 5 3 2 7 7 C 1.37875 * 120.00014 * 59.99665 * 5 3 2 8 8 N 1.31518 * 120.00029 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 119.99741 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47140 * 90.00393 * 9 7 5 11 11 H 1.48501 * 109.47156 * 210.00278 * 9 7 5 12 12 H 1.48499 * 109.47420 * 330.00265 * 9 7 5 13 13 N 1.46500 * 109.46990 * 65.00237 * 3 2 1 14 14 C 1.34782 * 119.99674 * 274.99483 * 13 3 2 15 15 O 1.21550 * 120.00296 * 0.02562 * 14 13 3 16 16 C 1.47844 * 119.99526 * 180.02562 * 14 13 3 17 17 C 1.39600 * 120.14587 * 353.86502 * 16 14 13 18 18 C 1.37935 * 119.85002 * 180.02562 * 17 16 14 19 19 C 1.38380 * 120.14996 * 359.74157 * 18 17 16 20 20 C 1.38345 * 120.28833 * 0.52010 * 19 18 17 21 21 C 1.37979 * 120.14081 * 359.48370 * 20 19 18 22 22 C 1.50704 * 120.06940 * 180.23841 * 21 20 19 23 23 C 1.52998 * 117.49729 * 1.56720 * 22 21 20 24 24 C 1.53002 * 60.00237 * 252.51506 * 23 22 21 25 25 H 1.09002 * 109.47039 * 59.99605 * 1 2 3 26 26 H 1.08995 * 109.47428 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46753 * 299.99822 * 1 2 3 28 28 H 1.09006 * 109.46601 * 239.99645 * 2 1 3 29 29 H 1.08999 * 109.46584 * 120.00190 * 2 1 3 30 30 H 0.96993 * 119.99674 * 180.02562 * 8 7 5 31 31 H 0.96995 * 119.99636 * 94.99911 * 13 3 2 32 32 H 1.08002 * 120.07330 * 0.02562 * 17 16 14 33 33 H 1.08007 * 119.92671 * 179.97438 * 18 17 16 34 34 H 1.07993 * 119.85900 * 180.27250 * 19 18 17 35 35 H 1.07993 * 119.92618 * 179.76057 * 20 19 18 36 36 H 1.08998 * 115.55414 * 147.28121 * 22 21 20 37 37 H 1.09002 * 117.50214 * 0.02562 * 23 22 21 38 38 H 1.09002 * 117.49538 * 145.02592 * 23 22 21 39 39 H 1.08993 * 117.49762 * 252.50882 * 24 23 22 40 40 H 1.08997 * 117.49627 * 107.49108 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5420 1.4442 -0.1239 6 1 4.1473 1.8888 0.6522 7 6 4.1433 0.8782 -1.2280 8 7 3.4061 0.3373 -2.1733 9 14 6.0049 0.8810 -1.3819 10 1 6.5548 -0.3504 -0.7603 11 1 6.3829 0.9221 -2.8174 12 1 6.5570 2.0736 -0.6903 13 7 1.6526 2.0974 1.2518 14 6 0.4352 2.6644 1.3669 15 8 -0.3412 2.6320 0.4323 16 6 0.0444 3.3259 2.6301 17 6 0.8798 3.2549 3.7463 18 6 0.5089 3.8738 4.9219 19 6 -0.6857 4.5685 4.9948 20 6 -1.5206 4.6381 3.8939 21 6 -1.1615 4.0234 2.7120 22 6 -2.0697 4.1048 1.5121 23 6 -3.3597 4.9149 1.6562 24 6 -3.4184 3.3871 1.5970 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.8292 -0.0612 -2.9499 31 1 2.2721 2.1230 1.9977 32 1 1.8144 2.7166 3.6895 33 1 1.1541 3.8193 5.7864 34 1 -0.9694 5.0550 5.9162 35 1 -2.4534 5.1785 3.9584 36 1 -1.5693 4.1228 0.5440 37 1 -3.5512 5.3893 2.6187 38 1 -3.7080 5.4661 0.7828 39 1 -3.8053 2.9334 0.6847 40 1 -3.6486 2.8562 2.5207 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001148481451.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:51 Heat of formation + Delta-G solvation = 9.826988 kcal Electronic energy + Delta-G solvation = -21097.985536 eV Core-core repulsion = 18071.249376 eV Total energy + Delta-G solvation = -3026.736160 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.11345 -38.15992 -36.55912 -35.00527 -32.51233 -31.48210 -30.47112 -30.22138 -26.98461 -24.01989 -23.53585 -22.79053 -22.14820 -20.46956 -20.11219 -19.25359 -17.76882 -16.35467 -15.97602 -15.43227 -15.06096 -14.73255 -14.52163 -14.29960 -14.01347 -13.85887 -12.99278 -12.74860 -12.66754 -12.08668 -11.86188 -11.56996 -11.46061 -11.36469 -11.23893 -11.06883 -10.91554 -10.79953 -10.50893 -10.33336 -10.17792 -10.14920 -9.60176 -9.04521 -8.85513 -8.76382 -8.50100 -8.48169 -7.77428 -6.12225 -4.21575 1.08213 1.39880 3.24216 3.31336 3.33281 3.35777 3.98836 4.09038 4.30818 4.38331 4.68958 4.87123 4.97418 5.07304 5.19007 5.20469 5.26861 5.44330 5.53667 5.65289 5.74941 5.92244 6.00379 6.08723 6.24404 6.34251 6.41329 6.45648 6.48872 6.49254 6.67505 6.81643 6.96071 7.07466 7.22053 7.38370 7.47395 7.63000 7.74805 7.91154 8.18742 8.67658 8.78323 9.14308 9.45901 10.93086 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.023018 B = 0.005038 C = 0.004455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.127047 B = 5556.566874 C = 6283.386751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 C 0.271 3.729 4 H 0.050 0.950 5 C -0.534 4.534 6 H 0.060 0.940 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.900 3.100 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.702 5.702 14 C 0.542 3.458 15 O -0.536 6.536 16 C -0.120 4.120 17 C -0.086 4.086 18 C -0.136 4.136 19 C -0.102 4.102 20 C -0.136 4.136 21 C 0.003 3.997 22 C -0.110 4.110 23 C -0.192 4.192 24 C -0.159 4.159 25 H 0.050 0.950 26 H 0.021 0.979 27 H 0.039 0.961 28 H 0.099 0.901 29 H 0.030 0.970 30 H 0.264 0.736 31 H 0.386 0.614 32 H 0.128 0.872 33 H 0.124 0.876 34 H 0.122 0.878 35 H 0.126 0.874 36 H 0.144 0.856 37 H 0.091 0.909 38 H 0.094 0.906 39 H 0.096 0.904 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.437 6.627 12.263 16.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.169 3.831 4 H 0.068 0.932 5 C -0.573 4.573 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.728 3.272 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.350 5.350 14 C 0.328 3.672 15 O -0.416 6.416 16 C -0.123 4.123 17 C -0.105 4.105 18 C -0.154 4.154 19 C -0.120 4.120 20 C -0.153 4.153 21 C 0.002 3.998 22 C -0.128 4.128 23 C -0.229 4.229 24 C -0.196 4.196 25 H 0.069 0.931 26 H 0.040 0.960 27 H 0.058 0.942 28 H 0.117 0.883 29 H 0.049 0.951 30 H 0.074 0.926 31 H 0.220 0.780 32 H 0.146 0.854 33 H 0.142 0.858 34 H 0.140 0.860 35 H 0.143 0.857 36 H 0.161 0.839 37 H 0.109 0.891 38 H 0.113 0.887 39 H 0.115 0.885 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -8.935 6.478 11.362 15.840 hybrid contribution 1.385 -0.093 0.388 1.442 sum -7.550 6.385 11.750 15.357 Atomic orbital electron populations 1.21839 0.98275 0.98001 1.01315 1.21935 0.92684 0.99743 1.02229 1.18801 0.94196 0.89187 0.80893 0.93174 1.21229 0.90721 1.39017 1.06298 0.92150 1.24875 0.98564 0.94810 0.95359 1.69895 1.35093 1.37592 1.09346 0.86466 0.84931 0.78432 0.77384 1.20555 1.21073 1.19874 1.46477 1.14429 1.55527 1.18543 1.18133 0.82905 0.79353 0.86827 1.90658 1.51135 1.59578 1.40253 1.20164 0.95710 1.01270 0.95156 1.21391 0.98826 0.97888 0.92387 1.21050 0.97309 0.99119 0.97881 1.21221 0.94374 0.98249 0.98205 1.21021 1.00425 1.01256 0.92635 1.19252 0.92935 0.93918 0.93743 1.21453 0.88214 1.03932 0.99206 1.23103 1.02732 0.94297 1.02728 1.22836 0.99593 0.94119 1.03008 0.93127 0.95964 0.94154 0.88296 0.95112 0.92574 0.78024 0.85386 0.85787 0.86041 0.85666 0.83852 0.89054 0.88737 0.88541 0.89332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.07 8.51 37.16 0.32 -2.75 16 2 C -0.13 -3.09 5.45 -26.73 -0.15 -3.23 16 3 C 0.27 6.77 2.24 -69.08 -0.15 6.62 16 4 H 0.05 1.45 7.58 -51.93 -0.39 1.05 16 5 C -0.53 -14.02 8.73 -34.44 -0.30 -14.32 16 6 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 7 C 0.07 1.79 5.29 -17.82 -0.09 1.70 16 8 N -0.88 -24.57 11.29 55.43 0.63 -23.95 16 9 Si 0.90 20.52 29.54 -169.99 -5.02 15.50 16 10 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 11 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 12 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 13 N -0.70 -14.66 4.97 -55.88 -0.28 -14.94 16 14 C 0.54 10.95 6.30 -12.33 -0.08 10.87 16 15 O -0.54 -12.06 10.46 5.32 0.06 -12.00 16 16 C -0.12 -2.00 5.87 -104.97 -0.62 -2.62 16 17 C -0.09 -1.20 9.53 -39.18 -0.37 -1.57 16 18 C -0.14 -1.57 10.03 -39.64 -0.40 -1.97 16 19 C -0.10 -1.13 10.04 -39.49 -0.40 -1.52 16 20 C -0.14 -1.68 9.37 -39.64 -0.37 -2.05 16 21 C 0.00 0.04 5.62 -104.23 -0.59 -0.55 16 22 C -0.11 -1.70 4.73 -91.77 -0.43 -2.13 16 23 C -0.19 -2.29 9.87 -26.73 -0.26 -2.55 16 24 C -0.16 -2.13 10.22 -26.73 -0.27 -2.40 16 25 H 0.05 1.20 7.84 -51.93 -0.41 0.79 16 26 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.04 0.89 5.64 -51.93 -0.29 0.59 16 28 H 0.10 2.65 5.95 -51.93 -0.31 2.35 16 29 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 31 H 0.39 7.10 6.61 -40.82 -0.27 6.83 16 32 H 0.13 1.61 6.45 -52.49 -0.34 1.27 16 33 H 0.12 1.10 8.06 -52.48 -0.42 0.68 16 34 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 35 H 0.13 1.28 5.93 -52.49 -0.31 0.97 16 36 H 0.14 2.62 5.92 -51.93 -0.31 2.32 16 37 H 0.09 0.93 6.08 -51.93 -0.32 0.62 16 38 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 40 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 320.28 15.07 4.83 4.83 Total: -1.00 -29.10 320.28 -9.41 -38.50 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: -5.45 Total: 10.55 kcal Atomic # 6 Polarization: -14.32 SS G_CDS: -4.17 Total: -18.49 kcal Atomic # 7 Polarization: -39.24 SS G_CDS: 0.35 Total: -38.89 kcal Atomic # 8 Polarization: -12.06 SS G_CDS: 0.06 Total: -12.00 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -29.10 -9.41 -38.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001148481451.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.332 kcal (2) G-P(sol) polarization free energy of solvation -29.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.505 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds