Wall clock time and date at job start Mon Mar 30 2020 02:39:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.47228 * 2 1 4 4 H 1.08994 * 109.47060 * 305.00014 * 3 2 1 5 5 C 1.50701 * 109.46889 * 185.00245 * 3 2 1 6 6 H 1.07999 * 119.99664 * 239.99860 * 5 3 2 7 7 C 1.37875 * 120.00014 * 59.99665 * 5 3 2 8 8 N 1.31518 * 120.00029 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 119.99741 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47140 * 90.00393 * 9 7 5 11 11 H 1.48501 * 109.47156 * 210.00278 * 9 7 5 12 12 H 1.48499 * 109.47420 * 330.00265 * 9 7 5 13 13 N 1.46500 * 109.46990 * 65.00237 * 3 2 1 14 14 C 1.34782 * 119.99674 * 274.99483 * 13 3 2 15 15 O 1.21550 * 120.00296 * 0.02562 * 14 13 3 16 16 C 1.47844 * 119.99526 * 180.02562 * 14 13 3 17 17 C 1.39600 * 120.14587 * 353.86502 * 16 14 13 18 18 C 1.37935 * 119.85002 * 180.02562 * 17 16 14 19 19 C 1.38380 * 120.14996 * 359.74157 * 18 17 16 20 20 C 1.38345 * 120.28833 * 0.52010 * 19 18 17 21 21 C 1.37979 * 120.14081 * 359.48370 * 20 19 18 22 22 C 1.50704 * 120.06940 * 180.23841 * 21 20 19 23 23 C 1.52998 * 117.49729 * 1.56720 * 22 21 20 24 24 C 1.53002 * 60.00237 * 252.51506 * 23 22 21 25 25 H 1.09002 * 109.47039 * 59.99605 * 1 2 3 26 26 H 1.08995 * 109.47428 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46753 * 299.99822 * 1 2 3 28 28 H 1.09006 * 109.46601 * 239.99645 * 2 1 3 29 29 H 1.08999 * 109.46584 * 120.00190 * 2 1 3 30 30 H 0.96993 * 119.99674 * 180.02562 * 8 7 5 31 31 H 0.96995 * 119.99636 * 94.99911 * 13 3 2 32 32 H 1.08002 * 120.07330 * 0.02562 * 17 16 14 33 33 H 1.08007 * 119.92671 * 179.97438 * 18 17 16 34 34 H 1.07993 * 119.85900 * 180.27250 * 19 18 17 35 35 H 1.07993 * 119.92618 * 179.76057 * 20 19 18 36 36 H 1.08998 * 115.55414 * 147.28121 * 22 21 20 37 37 H 1.09002 * 117.50214 * 0.02562 * 23 22 21 38 38 H 1.09002 * 117.49538 * 145.02592 * 23 22 21 39 39 H 1.08993 * 117.49762 * 252.50882 * 24 23 22 40 40 H 1.08997 * 117.49627 * 107.49108 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5420 1.4442 -0.1239 6 1 4.1473 1.8888 0.6522 7 6 4.1433 0.8782 -1.2280 8 7 3.4061 0.3373 -2.1733 9 14 6.0049 0.8810 -1.3819 10 1 6.5548 -0.3504 -0.7603 11 1 6.3829 0.9221 -2.8174 12 1 6.5570 2.0736 -0.6903 13 7 1.6526 2.0974 1.2518 14 6 0.4352 2.6644 1.3669 15 8 -0.3412 2.6320 0.4323 16 6 0.0444 3.3259 2.6301 17 6 0.8798 3.2549 3.7463 18 6 0.5089 3.8738 4.9219 19 6 -0.6857 4.5685 4.9948 20 6 -1.5206 4.6381 3.8939 21 6 -1.1615 4.0234 2.7120 22 6 -2.0697 4.1048 1.5121 23 6 -3.3597 4.9149 1.6562 24 6 -3.4184 3.3871 1.5970 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.8292 -0.0612 -2.9499 31 1 2.2721 2.1230 1.9977 32 1 1.8144 2.7166 3.6895 33 1 1.1541 3.8193 5.7864 34 1 -0.9694 5.0550 5.9162 35 1 -2.4534 5.1785 3.9584 36 1 -1.5693 4.1228 0.5440 37 1 -3.5512 5.3893 2.6187 38 1 -3.7080 5.4661 0.7828 39 1 -3.8053 2.9334 0.6847 40 1 -3.6486 2.8562 2.5207 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001148481451.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:51 Heat of formation + Delta-G solvation = -6.108477 kcal Electronic energy + Delta-G solvation = -21098.676549 eV Core-core repulsion = 18071.249376 eV Total energy + Delta-G solvation = -3027.427174 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.39470 -39.57519 -37.60774 -36.84763 -34.34789 -33.14971 -31.69602 -31.41514 -28.92134 -25.53396 -24.58649 -24.45219 -23.21469 -22.04778 -21.35910 -20.90758 -19.27844 -17.89155 -17.34805 -17.10496 -16.39572 -16.26200 -15.94755 -15.57714 -15.33923 -14.98157 -14.58275 -14.40805 -14.07900 -13.54664 -13.29070 -13.20328 -13.09647 -12.90990 -12.68292 -12.52571 -12.39208 -12.14475 -12.08100 -11.97826 -11.60187 -11.54609 -11.28829 -11.05697 -10.55743 -10.28513 -9.91588 -9.62869 -9.42806 -8.16791 -6.34319 -0.01460 0.42209 1.43938 1.44705 1.55141 2.09155 2.35587 2.65192 2.81914 3.12367 3.18569 3.65565 3.88459 3.95251 4.07886 4.19051 4.24335 4.37904 4.47577 4.53234 4.55952 4.62787 4.74281 4.77102 4.88243 5.01033 5.07049 5.12057 5.21511 5.26283 5.28407 5.42353 5.45259 5.53261 5.54434 5.60288 5.73849 5.78796 5.93487 6.02749 6.16173 6.73311 7.00325 7.32825 7.58622 8.88662 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.023018 B = 0.005038 C = 0.004455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.127047 B = 5556.566874 C = 6283.386751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.119 4.119 3 C 0.280 3.720 4 H -0.002 1.002 5 C -0.549 4.549 6 H 0.069 0.931 7 C 0.017 3.983 8 N -0.915 5.915 9 Si 0.971 3.029 10 H -0.270 1.270 11 H -0.286 1.286 12 H -0.266 1.266 13 N -0.703 5.703 14 C 0.536 3.464 15 O -0.569 6.569 16 C -0.154 4.154 17 C -0.092 4.092 18 C -0.132 4.132 19 C -0.086 4.086 20 C -0.136 4.136 21 C -0.010 4.010 22 C -0.140 4.140 23 C -0.160 4.160 24 C -0.163 4.163 25 H 0.026 0.974 26 H 0.044 0.956 27 H 0.041 0.959 28 H 0.073 0.927 29 H 0.039 0.961 30 H 0.265 0.735 31 H 0.399 0.601 32 H 0.134 0.866 33 H 0.158 0.842 34 H 0.163 0.837 35 H 0.151 0.849 36 H 0.101 0.899 37 H 0.119 0.881 38 H 0.102 0.898 39 H 0.086 0.914 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.429 7.830 15.749 19.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.158 4.158 3 C 0.177 3.823 4 H 0.016 0.984 5 C -0.587 4.587 6 H 0.088 0.912 7 C -0.184 4.184 8 N -0.553 5.553 9 Si 0.795 3.205 10 H -0.196 1.196 11 H -0.212 1.212 12 H -0.190 1.190 13 N -0.352 5.352 14 C 0.325 3.675 15 O -0.451 6.451 16 C -0.157 4.157 17 C -0.110 4.110 18 C -0.149 4.149 19 C -0.104 4.104 20 C -0.154 4.154 21 C -0.011 4.011 22 C -0.158 4.158 23 C -0.197 4.197 24 C -0.200 4.200 25 H 0.045 0.955 26 H 0.063 0.937 27 H 0.060 0.940 28 H 0.091 0.909 29 H 0.057 0.943 30 H 0.074 0.926 31 H 0.234 0.766 32 H 0.152 0.848 33 H 0.176 0.824 34 H 0.181 0.819 35 H 0.169 0.831 36 H 0.119 0.881 37 H 0.137 0.863 38 H 0.120 0.880 39 H 0.105 0.895 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -8.930 7.694 14.884 18.986 hybrid contribution 1.308 -0.403 -0.661 1.520 sum -7.622 7.291 14.223 17.707 Atomic orbital electron populations 1.21655 0.96988 0.98983 1.00204 1.21777 0.93726 0.99143 1.01192 1.18362 0.93661 0.89104 0.81176 0.98374 1.21562 0.91379 1.39031 1.06755 0.91249 1.25763 1.03349 0.94314 0.94926 1.70050 1.37069 1.38301 1.09863 0.85368 0.79058 0.78870 0.77179 1.19571 1.21197 1.18993 1.46230 1.15382 1.55992 1.17579 1.18807 0.81991 0.78640 0.88047 1.90650 1.51915 1.60592 1.41932 1.19949 0.97847 1.03753 0.94187 1.21554 0.98675 0.98290 0.92527 1.21457 0.97979 0.97782 0.97702 1.21737 0.93184 0.96428 0.99019 1.21314 1.01700 1.00639 0.91718 1.19388 0.92452 0.94483 0.94818 1.21252 0.89362 1.07340 0.97896 1.23207 0.98829 0.93202 1.04434 1.22870 0.98312 0.95725 1.03048 0.95451 0.93729 0.94011 0.90901 0.94264 0.92580 0.76565 0.84848 0.82402 0.81919 0.83109 0.88084 0.86263 0.88009 0.89509 0.88353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.66 8.51 71.98 0.61 -5.05 16 2 C -0.12 -6.05 5.45 30.60 0.17 -5.89 16 3 C 0.28 14.77 2.24 44.25 0.10 14.87 16 4 H 0.00 -0.10 7.58 -2.39 -0.02 -0.12 16 5 C -0.55 -29.57 8.73 25.60 0.22 -29.35 16 6 H 0.07 3.52 7.74 -2.91 -0.02 3.49 16 7 C 0.02 0.90 5.29 84.65 0.45 1.35 16 8 N -0.91 -52.85 11.29 21.45 0.24 -52.61 16 9 Si 0.97 42.43 29.54 68.60 2.03 44.46 16 10 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 11 H -0.29 -12.48 7.11 99.48 0.71 -11.77 16 12 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 13 N -0.70 -30.65 4.97 -448.98 -2.23 -32.88 16 14 C 0.54 22.85 6.30 86.79 0.55 23.40 16 15 O -0.57 -27.66 10.46 -3.87 -0.04 -27.70 16 16 C -0.15 -5.19 5.87 -20.09 -0.12 -5.31 16 17 C -0.09 -2.41 9.53 22.53 0.21 -2.20 16 18 C -0.13 -2.51 10.03 22.23 0.22 -2.29 16 19 C -0.09 -1.47 10.04 22.33 0.22 -1.25 16 20 C -0.14 -2.91 9.37 22.23 0.21 -2.70 16 21 C -0.01 -0.31 5.62 -19.61 -0.11 -0.42 16 22 C -0.14 -4.42 4.73 -11.54 -0.05 -4.48 16 23 C -0.16 -3.56 9.87 30.59 0.30 -3.26 16 24 C -0.16 -4.35 10.22 30.60 0.31 -4.04 16 25 H 0.03 1.36 7.84 -2.39 -0.02 1.34 16 26 H 0.04 1.83 8.14 -2.39 -0.02 1.82 16 27 H 0.04 1.91 5.64 -2.38 -0.01 1.90 16 28 H 0.07 4.10 5.95 -2.38 -0.01 4.08 16 29 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.27 14.49 8.31 -92.71 -0.77 13.72 16 31 H 0.40 15.00 6.61 -92.71 -0.61 14.39 16 32 H 0.13 3.21 6.45 -2.91 -0.02 3.19 16 33 H 0.16 1.96 8.06 -2.91 -0.02 1.94 16 34 H 0.16 1.52 8.06 -2.91 -0.02 1.49 16 35 H 0.15 2.37 5.93 -2.91 -0.02 2.35 16 36 H 0.10 4.04 5.92 -2.39 -0.01 4.03 16 37 H 0.12 1.97 6.08 -2.39 -0.01 1.96 16 38 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 39 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 40 H 0.10 2.40 8.14 -2.39 -0.02 2.38 16 Total: -1.00 -67.65 320.28 3.74 -63.91 By element: Atomic # 1 Polarization: 30.98 SS G_CDS: 0.44 Total: 31.42 kcal Atomic # 6 Polarization: -29.90 SS G_CDS: 3.30 Total: -26.60 kcal Atomic # 7 Polarization: -83.50 SS G_CDS: -1.99 Total: -85.49 kcal Atomic # 8 Polarization: -27.66 SS G_CDS: -0.04 Total: -27.70 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 2.03 Total: 44.46 kcal Total: -67.65 3.74 -63.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001148481451.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.801 kcal (2) G-P(sol) polarization free energy of solvation -67.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds