Wall clock time and date at job start Mon Mar 30 2020 01:20:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.53005 * 109.47024 * 260.45518 * 3 2 1 5 5 C 1.52997 * 109.47066 * 20.45797 * 3 2 1 6 6 C 1.52994 * 109.47265 * 304.05018 * 5 3 2 7 7 N 1.46499 * 109.46879 * 140.45953 * 3 2 1 8 8 C 1.38926 * 119.99799 * 303.34534 * 7 3 2 9 9 C 1.39715 * 119.80171 * 5.25656 * 8 7 3 10 10 C 1.36225 * 120.43340 * 179.71821 * 9 8 7 11 11 C 1.40852 * 120.00590 * 0.55441 * 10 9 8 12 12 C 1.40977 * 120.19937 * 179.70148 * 11 10 9 13 13 H 1.08000 * 119.99661 * 156.83411 * 12 11 10 14 14 C 1.39845 * 119.99830 * 336.83879 * 12 11 10 15 15 N 1.30949 * 119.99946 * 329.53184 * 14 12 11 16 16 Si 1.86800 * 119.99961 * 149.53703 * 14 12 11 17 17 H 1.48506 * 109.47039 * 94.97783 * 16 14 12 18 18 H 1.48498 * 109.46862 * 214.97736 * 16 14 12 19 19 H 1.48503 * 109.47046 * 334.97934 * 16 14 12 20 20 C 1.41465 * 119.60135 * 359.72299 * 11 10 9 21 21 O 1.35670 * 120.21388 * 180.02562 * 20 11 10 22 22 C 1.42900 * 117.00381 * 179.97438 * 21 20 11 23 23 C 1.38043 * 119.57674 * 359.97438 * 20 11 10 24 24 H 4.44656 * 5.63290 * 180.02562 * 4 1 2 25 25 H 1.09002 * 109.46998 * 175.42879 * 4 3 2 26 26 H 1.09004 * 109.46786 * 295.42946 * 4 3 2 27 27 H 1.08996 * 109.46628 * 55.42599 * 4 3 2 28 28 H 1.09003 * 109.46544 * 184.05417 * 5 3 2 29 29 H 1.08993 * 109.47344 * 64.05469 * 5 3 2 30 30 H 1.09005 * 109.47612 * 300.00612 * 6 5 3 31 31 H 1.09003 * 109.47018 * 60.00128 * 6 5 3 32 32 H 1.09001 * 109.47309 * 179.97438 * 6 5 3 33 33 H 0.97005 * 120.00398 * 123.34851 * 7 3 2 34 34 H 1.08004 * 119.78132 * 359.97438 * 9 8 7 35 35 H 1.08004 * 119.99696 * 180.27950 * 10 9 8 36 36 H 0.97003 * 120.00108 * 179.97438 * 15 14 12 37 37 H 1.09004 * 109.47086 * 59.98948 * 22 21 20 38 38 H 1.08999 * 109.47319 * 179.97438 * 22 21 20 39 39 H 1.09001 * 109.46814 * 299.99641 * 22 21 20 40 40 H 1.08002 * 120.01058 * 180.02562 * 23 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1559 0.2401 1.4226 5 6 3.1566 -1.3506 -0.5042 6 6 2.5656 -2.4713 0.3534 7 7 3.1338 1.0660 -0.8793 8 6 2.7417 1.1010 -2.2116 9 6 1.7974 0.1849 -2.6819 10 6 1.3995 0.2114 -3.9844 11 6 1.9492 1.1589 -4.8698 12 6 1.5450 1.1858 -6.2201 13 1 1.6528 2.0918 -6.7981 14 6 1.0044 0.0394 -6.8111 15 7 1.3835 -1.1468 -6.4062 16 14 -0.2583 0.2003 -8.1782 17 1 0.4252 0.1263 -9.4946 18 1 -1.2469 -0.9026 -8.0711 19 1 -0.9569 1.5050 -8.0558 20 6 2.9097 2.0831 -4.3960 21 8 3.4469 3.0014 -5.2379 22 6 4.4102 3.9017 -4.6869 23 6 3.2962 2.0453 -3.0713 24 1 -1.0501 -0.0002 -0.0001 25 1 4.2429 0.1600 1.4372 26 1 2.8605 1.2364 1.7515 27 1 2.7275 -0.5055 2.0923 28 1 4.2442 -1.3762 -0.4364 29 1 2.8539 -1.4891 -1.5420 30 1 2.8683 -2.3328 1.3914 31 1 1.4780 -2.4457 0.2857 32 1 2.9290 -3.4341 -0.0061 33 1 3.7306 1.7470 -0.5313 34 1 1.3771 -0.5463 -2.0072 35 1 0.6657 -0.4972 -4.3393 36 1 1.0083 -1.9420 -6.8159 37 1 5.2544 3.3348 -4.2943 38 1 4.7591 4.5811 -5.4645 39 1 3.9520 4.4756 -3.8814 40 1 4.0286 2.7479 -2.7021 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169701283.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:31 Heat of formation + Delta-G solvation = 44.333581 kcal Electronic energy + Delta-G solvation = -21104.567465 eV Core-core repulsion = 18079.327623 eV Total energy + Delta-G solvation = -3025.239842 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.12966 -37.98132 -35.71267 -33.76665 -32.05183 -31.55600 -29.73330 -28.70017 -27.95828 -26.44987 -24.49841 -23.96776 -21.48110 -20.86198 -20.20193 -17.64327 -17.08885 -16.56353 -15.92318 -14.95378 -14.88242 -14.72348 -14.55326 -14.27189 -13.81040 -13.65469 -12.68531 -12.55918 -12.35114 -12.15233 -12.10019 -11.89804 -11.72428 -11.31897 -11.14458 -11.11794 -11.01136 -10.67606 -10.61690 -10.41830 -10.23275 -10.02592 -9.87870 -9.62641 -9.24907 -8.97968 -8.40676 -7.07811 -6.75078 -6.38655 -3.85458 2.92741 3.04506 3.13480 3.19633 3.22381 3.24452 3.38338 4.11283 4.34320 4.58347 4.62270 4.74935 5.08479 5.16413 5.47490 5.63829 5.64760 5.67916 5.71873 5.83164 5.90734 5.97391 6.02392 6.06310 6.19983 6.21684 6.28030 6.44199 6.53890 6.63342 6.83874 7.05545 7.18437 7.34883 7.49185 7.76835 8.00443 8.01434 8.15197 8.43446 8.58412 8.69481 8.87252 9.05098 9.27186 10.34971 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.017266 B = 0.006066 C = 0.004925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.256270 B = 4614.425971 C = 5684.065761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.165 4.165 3 C 0.299 3.701 4 C -0.148 4.148 5 C -0.138 4.138 6 C -0.150 4.150 7 N -0.748 5.748 8 C 0.115 3.885 9 C -0.178 4.178 10 C -0.120 4.120 11 C 0.072 3.928 12 C -0.460 4.460 13 H 0.079 0.921 14 C 0.084 3.916 15 N -0.791 5.791 16 Si 0.891 3.109 17 H -0.273 1.273 18 H -0.278 1.278 19 H -0.261 1.261 20 C 0.039 3.961 21 O -0.310 6.310 22 C 0.037 3.963 23 C -0.233 4.233 24 H 0.211 0.789 25 H 0.066 0.934 26 H 0.060 0.940 27 H 0.071 0.929 28 H 0.068 0.932 29 H 0.087 0.913 30 H 0.052 0.948 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.387 0.613 34 H 0.103 0.897 35 H 0.111 0.889 36 H 0.277 0.723 37 H 0.039 0.961 38 H 0.079 0.921 39 H 0.037 0.963 40 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.362 0.679 11.467 11.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.167 4.167 3 C 0.210 3.790 4 C -0.206 4.206 5 C -0.177 4.177 6 C -0.208 4.208 7 N -0.382 5.382 8 C 0.018 3.982 9 C -0.200 4.200 10 C -0.140 4.140 11 C 0.068 3.932 12 C -0.489 4.489 13 H 0.097 0.903 14 C -0.133 4.133 15 N -0.417 5.417 16 Si 0.715 3.285 17 H -0.198 1.198 18 H -0.203 1.203 19 H -0.185 1.185 20 C -0.006 4.006 21 O -0.224 6.224 22 C -0.060 4.060 23 C -0.256 4.256 24 H 0.228 0.772 25 H 0.085 0.915 26 H 0.079 0.921 27 H 0.090 0.910 28 H 0.087 0.913 29 H 0.106 0.894 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.220 0.780 34 H 0.121 0.879 35 H 0.129 0.871 36 H 0.087 0.913 37 H 0.057 0.943 38 H 0.098 0.902 39 H 0.056 0.944 40 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 2.240 0.318 11.236 11.462 hybrid contribution -0.405 0.332 -0.328 0.618 sum 1.834 0.651 10.908 11.080 Atomic orbital electron populations 1.24801 0.95808 1.00776 1.01790 1.23378 0.94560 0.99757 0.98992 1.16844 0.82934 0.88971 0.90205 1.22014 1.01428 1.02453 0.94670 1.22107 1.00494 0.92939 1.02128 1.21814 1.01354 0.98225 0.99398 1.44023 1.55919 1.30885 1.07414 1.16907 0.99476 0.98645 0.83156 1.20301 1.01540 1.01534 0.96614 1.20440 1.01444 1.00860 0.91305 1.16888 0.90893 0.91232 0.94142 1.19143 1.36475 0.97438 0.95889 0.90254 1.25767 0.95614 0.94598 0.97368 1.69982 1.34300 0.98722 1.38710 0.86597 0.81449 0.79215 0.81220 1.19848 1.20283 1.18484 1.18872 0.98246 0.95300 0.88152 1.85983 1.55413 1.44049 1.36980 1.22697 0.91697 0.92646 0.98944 1.20056 1.07484 1.04527 0.93487 0.77191 0.91460 0.92073 0.91014 0.91348 0.89442 0.92945 0.92551 0.92728 0.77984 0.87883 0.87122 0.91277 0.94277 0.90212 0.94419 0.88727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.35 18.89 29.55 0.56 -2.79 16 2 C -0.17 -2.75 7.57 -37.12 -0.28 -3.03 16 3 C 0.30 4.56 0.79 -134.61 -0.11 4.46 16 4 C -0.15 -1.70 8.16 37.16 0.30 -1.40 16 5 C -0.14 -2.10 4.86 -26.74 -0.13 -2.23 16 6 C -0.15 -1.90 9.34 37.15 0.35 -1.56 16 7 N -0.75 -13.06 5.20 -48.50 -0.25 -13.31 16 8 C 0.11 2.52 6.24 -83.73 -0.52 1.99 16 9 C -0.18 -4.20 7.19 -39.75 -0.29 -4.49 16 10 C -0.12 -3.18 8.70 -39.32 -0.34 -3.52 16 11 C 0.07 1.99 5.57 -106.64 -0.59 1.40 16 12 C -0.46 -12.92 8.63 -37.94 -0.33 -13.24 16 13 H 0.08 2.24 7.71 -52.49 -0.40 1.84 16 14 C 0.08 2.21 4.81 -17.33 -0.08 2.13 16 15 N -0.79 -21.23 11.72 55.54 0.65 -20.58 16 16 Si 0.89 19.55 29.65 -169.99 -5.04 14.51 16 17 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 18 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 19 H -0.26 -5.74 7.11 56.52 0.40 -5.34 16 20 C 0.04 1.01 6.71 -38.42 -0.26 0.75 16 21 O -0.31 -7.43 9.76 -18.71 -0.18 -7.62 16 22 C 0.04 0.64 9.81 101.05 0.99 1.63 16 23 C -0.23 -5.28 8.86 -39.29 -0.35 -5.63 16 24 H 0.21 2.60 7.80 -54.09 -0.42 2.18 16 25 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.07 0.74 6.77 -51.93 -0.35 0.39 16 28 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 29 H 0.09 1.63 5.46 -51.93 -0.28 1.35 16 30 H 0.05 0.56 6.64 -51.93 -0.34 0.21 16 31 H 0.06 0.76 7.11 -51.93 -0.37 0.39 16 32 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.39 5.91 8.48 -40.82 -0.35 5.57 16 34 H 0.10 2.28 3.92 -52.48 -0.21 2.07 16 35 H 0.11 3.01 6.53 -52.48 -0.34 2.67 16 36 H 0.28 6.76 8.30 -40.82 -0.34 6.42 16 37 H 0.04 0.65 7.66 -51.93 -0.40 0.25 16 38 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 39 H 0.04 0.62 7.66 -51.93 -0.40 0.22 16 40 H 0.09 1.88 6.29 -52.49 -0.33 1.55 16 LS Contribution 324.85 15.07 4.90 4.90 Total: -1.00 -30.42 324.85 -6.45 -36.87 By element: Atomic # 1 Polarization: 16.22 SS G_CDS: -5.44 Total: 10.78 kcal Atomic # 6 Polarization: -24.46 SS G_CDS: -1.08 Total: -25.54 kcal Atomic # 7 Polarization: -34.29 SS G_CDS: 0.40 Total: -33.89 kcal Atomic # 8 Polarization: -7.43 SS G_CDS: -0.18 Total: -7.62 kcal Atomic # 14 Polarization: 19.55 SS G_CDS: -5.04 Total: 14.51 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -30.42 -6.45 -36.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169701283.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.205 kcal (2) G-P(sol) polarization free energy of solvation -30.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.871 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds