Wall clock time and date at job start Mon Mar 30 2020 01:20:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.53005 * 109.47100 * 246.93293 * 3 2 1 5 5 C 1.52996 * 109.47127 * 126.93632 * 3 2 1 6 6 C 1.52997 * 109.47429 * 59.99822 * 5 3 2 7 7 N 1.46502 * 109.47217 * 6.93254 * 3 2 1 8 8 C 1.38923 * 120.00073 * 305.86036 * 7 3 2 9 9 C 1.39717 * 119.79706 * 0.24156 * 8 7 3 10 10 C 1.36228 * 120.42898 * 180.02562 * 9 8 7 11 11 C 1.40851 * 120.00988 * 359.97438 * 10 9 8 12 12 C 1.40970 * 120.20208 * 179.97438 * 11 10 9 13 13 H 1.08005 * 119.99649 * 150.55070 * 12 11 10 14 14 C 1.39834 * 120.00166 * 330.55653 * 12 11 10 15 15 N 1.30955 * 119.99917 * 348.27644 * 14 12 11 16 16 Si 1.86800 * 120.00435 * 168.27447 * 14 12 11 17 17 H 1.48501 * 109.46917 * 59.99592 * 16 14 12 18 18 H 1.48493 * 109.47436 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.46946 * 300.00023 * 16 14 12 20 20 C 1.41468 * 119.59715 * 0.02562 * 11 10 9 21 21 O 1.35671 * 120.20991 * 179.97438 * 20 11 10 22 22 C 1.42904 * 117.00003 * 179.97438 * 21 20 11 23 23 C 1.38044 * 119.57867 * 0.24821 * 20 11 10 24 24 H 4.44646 * 5.63305 * 179.97438 * 4 1 2 25 25 H 1.08997 * 109.46845 * 188.10949 * 4 3 2 26 26 H 1.09003 * 109.47094 * 308.11514 * 4 3 2 27 27 H 1.08998 * 109.46932 * 68.10931 * 4 3 2 28 28 H 1.09000 * 109.47275 * 179.97438 * 5 3 2 29 29 H 1.09004 * 109.47342 * 299.99604 * 5 3 2 30 30 H 1.08996 * 109.47085 * 59.99938 * 6 5 3 31 31 H 1.09000 * 109.47527 * 180.02562 * 6 5 3 32 32 H 1.09000 * 109.46967 * 300.00281 * 6 5 3 33 33 H 0.97003 * 119.99706 * 125.86337 * 7 3 2 34 34 H 1.08000 * 119.78620 * 0.02562 * 9 8 7 35 35 H 1.08003 * 119.99545 * 179.97438 * 10 9 8 36 36 H 0.97003 * 119.99667 * 180.02562 * 15 14 12 37 37 H 1.08998 * 109.47042 * 179.97438 * 22 21 20 38 38 H 1.09005 * 109.47093 * 59.99791 * 22 21 20 39 39 H 1.08999 * 109.47113 * 299.99990 * 22 21 20 40 40 H 1.08001 * 120.01124 * 179.75304 * 23 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1558 0.5661 1.3272 5 6 3.1556 0.8677 -1.1530 6 6 2.6450 2.2994 -0.9789 7 7 3.1350 -1.3703 -0.1667 8 6 2.7025 -2.3715 0.6938 9 6 1.7973 -2.0673 1.7136 10 6 1.3651 -3.0389 2.5650 11 6 1.8303 -4.3605 2.4202 12 6 1.3862 -5.3690 3.2993 13 1 1.3263 -6.3928 2.9604 14 6 1.0231 -5.0440 4.6100 15 7 1.3076 -3.8609 5.0940 16 14 0.1321 -6.2973 5.6706 17 1 0.9785 -7.5080 5.8225 18 1 -0.1376 -5.7115 7.0082 19 1 -1.1521 -6.6690 5.0243 20 6 2.7470 -4.6693 1.3879 21 8 3.2036 -5.9380 1.2374 22 6 4.1266 -6.1732 0.1721 23 6 3.1782 -3.6705 0.5381 24 1 -1.0500 0.0001 -0.0002 25 1 4.2360 0.7013 1.2735 26 1 2.6784 1.5268 1.5201 27 1 2.9159 -0.1271 2.1335 28 1 4.2456 0.8686 -1.1527 29 1 2.7925 0.4649 -2.0985 30 1 3.0081 2.7022 -0.0334 31 1 3.0077 2.9170 -1.8005 32 1 1.5550 2.2989 -0.9788 33 1 3.7608 -1.5788 -0.8780 34 1 1.4378 -1.0553 1.8277 35 1 0.6655 -2.7959 3.3512 36 1 1.0560 -3.6355 6.0033 37 1 4.4116 -7.2252 0.1639 38 1 5.0144 -5.5577 0.3180 39 1 3.6583 -5.9158 -0.7779 40 1 3.8809 -3.8977 -0.2499 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169701284.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:34 Heat of formation + Delta-G solvation = 26.495717 kcal Electronic energy + Delta-G solvation = -21013.571037 eV Core-core repulsion = 17987.557688 eV Total energy + Delta-G solvation = -3026.013350 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.76854 -39.53226 -37.48359 -35.56355 -33.59164 -32.88869 -30.85695 -30.59498 -29.35695 -27.97327 -26.66314 -24.91991 -23.12321 -22.33223 -21.97627 -19.30402 -18.73942 -18.16985 -17.53928 -16.71912 -16.22425 -16.20815 -16.08650 -15.74359 -15.51517 -14.56745 -14.48112 -14.42891 -13.98162 -13.59425 -13.35354 -13.09435 -12.92459 -12.87455 -12.76856 -12.53068 -12.43576 -12.16596 -12.07965 -11.90821 -11.74555 -11.53646 -11.43822 -11.22887 -11.02272 -10.75291 -10.19849 -8.91854 -8.44975 -8.16358 -5.93190 1.12417 1.14527 1.39874 1.51340 1.57040 1.83580 1.97898 2.31924 2.84742 2.92044 3.03361 3.46035 3.79521 3.91596 4.10916 4.37676 4.43855 4.47967 4.50743 4.57602 4.65939 4.69163 4.73445 4.75507 4.94613 5.01405 5.07042 5.13270 5.18464 5.26576 5.31282 5.40193 5.46640 5.50213 5.63412 5.91465 6.11476 6.28695 6.51175 6.76234 6.80275 6.95465 7.10623 7.17222 7.38966 8.59007 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.019832 B = 0.005518 C = 0.004623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.518917 B = 5073.538072 C = 6055.526140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.198 4.198 3 C 0.291 3.709 4 C -0.165 4.165 5 C -0.111 4.111 6 C -0.148 4.148 7 N -0.737 5.737 8 C 0.156 3.844 9 C -0.199 4.199 10 C -0.109 4.109 11 C 0.012 3.988 12 C -0.489 4.489 13 H 0.059 0.941 14 C 0.028 3.972 15 N -0.854 5.854 16 Si 0.975 3.025 17 H -0.267 1.267 18 H -0.269 1.269 19 H -0.264 1.264 20 C 0.046 3.954 21 O -0.339 6.339 22 C 0.027 3.973 23 C -0.253 4.253 24 H 0.235 0.765 25 H 0.077 0.923 26 H 0.076 0.924 27 H 0.044 0.956 28 H 0.092 0.908 29 H 0.070 0.930 30 H 0.064 0.936 31 H 0.076 0.924 32 H 0.047 0.953 33 H 0.402 0.598 34 H 0.115 0.885 35 H 0.102 0.898 36 H 0.279 0.721 37 H 0.110 0.890 38 H 0.051 0.949 39 H 0.052 0.948 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.781 9.054 -10.797 14.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.199 4.199 3 C 0.204 3.796 4 C -0.223 4.223 5 C -0.149 4.149 6 C -0.205 4.205 7 N -0.371 5.371 8 C 0.056 3.944 9 C -0.221 4.221 10 C -0.129 4.129 11 C 0.009 3.991 12 C -0.521 4.521 13 H 0.077 0.923 14 C -0.182 4.182 15 N -0.485 5.485 16 Si 0.797 3.203 17 H -0.191 1.191 18 H -0.194 1.194 19 H -0.188 1.188 20 C 0.001 3.999 21 O -0.254 6.254 22 C -0.068 4.068 23 C -0.275 4.275 24 H 0.251 0.749 25 H 0.096 0.904 26 H 0.095 0.905 27 H 0.063 0.937 28 H 0.111 0.889 29 H 0.088 0.912 30 H 0.083 0.917 31 H 0.095 0.905 32 H 0.066 0.934 33 H 0.237 0.763 34 H 0.132 0.868 35 H 0.120 0.880 36 H 0.089 0.911 37 H 0.128 0.872 38 H 0.069 0.931 39 H 0.071 0.929 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 3.668 9.153 -10.419 14.345 hybrid contribution -0.368 -0.767 0.399 0.939 sum 3.300 8.386 -10.021 13.477 Atomic orbital electron populations 1.25572 0.96850 0.99666 1.00883 1.23785 0.95401 1.00598 1.00130 1.17205 0.82531 0.82868 0.96982 1.22403 1.02210 1.01130 0.96550 1.21682 1.02002 0.95375 0.95792 1.21775 1.01051 0.94707 1.02996 1.44144 1.52298 1.05160 1.35492 1.17117 0.96913 0.87839 0.92568 1.20432 1.03795 0.99060 0.98825 1.20621 1.00679 0.92653 0.98995 1.17256 0.94122 0.94247 0.93506 1.19241 1.41421 0.94972 0.96484 0.92300 1.26494 0.94732 0.97889 0.99060 1.69905 1.39393 1.22569 1.16609 0.85368 0.79162 0.78625 0.77122 1.19135 1.19357 1.18845 1.19195 0.97849 0.83331 0.99530 1.85947 1.60524 1.26697 1.52188 1.23075 0.91655 1.03025 0.89031 1.20324 1.09671 0.92359 1.05184 0.74863 0.90368 0.90491 0.93706 0.88920 0.91151 0.91725 0.90490 0.93415 0.76253 0.86752 0.88036 0.91124 0.87202 0.93070 0.92896 0.85406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -6.41 18.98 74.32 1.41 -4.99 16 2 C -0.20 -6.29 7.71 31.13 0.24 -6.05 16 3 C 0.29 8.20 0.79 1.80 0.00 8.20 16 4 C -0.16 -4.69 7.73 71.98 0.56 -4.13 16 5 C -0.11 -2.18 5.08 30.59 0.16 -2.03 16 6 C -0.15 -2.52 9.31 71.98 0.67 -1.85 16 7 N -0.74 -23.84 5.21 -307.36 -1.60 -25.44 16 8 C 0.16 6.65 6.24 38.61 0.24 6.89 16 9 C -0.20 -9.54 7.16 22.16 0.16 -9.38 16 10 C -0.11 -6.07 8.58 22.44 0.19 -5.88 16 11 C 0.01 0.68 5.55 -21.17 -0.12 0.56 16 12 C -0.49 -29.12 8.66 23.33 0.20 -28.92 16 13 H 0.06 3.52 7.70 -2.91 -0.02 3.50 16 14 C 0.03 1.53 5.22 85.21 0.45 1.97 16 15 N -0.85 -48.64 10.93 21.81 0.24 -48.41 16 16 Si 0.98 42.65 29.58 68.60 2.03 44.68 16 17 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 18 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 19 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 20 C 0.05 2.41 6.71 23.02 0.15 2.56 16 21 O -0.34 -16.33 9.83 -89.88 -0.88 -17.21 16 22 C 0.03 0.90 9.81 113.37 1.11 2.01 16 23 C -0.25 -11.14 8.86 22.46 0.20 -10.95 16 24 H 0.23 5.47 7.80 -4.42 -0.03 5.44 16 25 H 0.08 1.92 8.13 -2.39 -0.02 1.90 16 26 H 0.08 1.89 6.87 -2.39 -0.02 1.88 16 27 H 0.04 1.62 5.42 -2.39 -0.01 1.61 16 28 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.06 1.06 6.62 -2.39 -0.02 1.04 16 31 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.05 0.92 7.23 -2.39 -0.02 0.91 16 33 H 0.40 10.77 8.48 -92.71 -0.79 9.98 16 34 H 0.11 5.13 4.00 -2.91 -0.01 5.12 16 35 H 0.10 5.98 6.29 -2.91 -0.02 5.96 16 36 H 0.28 14.54 8.30 -92.71 -0.77 13.77 16 37 H 0.11 2.94 8.14 -2.39 -0.02 2.92 16 38 H 0.05 1.57 7.65 -2.38 -0.02 1.55 16 39 H 0.05 1.59 7.68 -2.39 -0.02 1.57 16 40 H 0.13 4.69 6.29 -2.91 -0.02 4.67 16 Total: -1.00 -69.99 324.29 5.67 -64.32 By element: Atomic # 1 Polarization: 33.77 SS G_CDS: 0.26 Total: 34.03 kcal Atomic # 6 Polarization: -57.60 SS G_CDS: 5.62 Total: -51.98 kcal Atomic # 7 Polarization: -72.48 SS G_CDS: -1.36 Total: -73.84 kcal Atomic # 8 Polarization: -16.33 SS G_CDS: -0.88 Total: -17.21 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.68 kcal Total: -69.99 5.67 -64.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169701284.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.818 kcal (2) G-P(sol) polarization free energy of solvation -69.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.322 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds