Wall clock time and date at job start Mon Mar 30 2020 01:20:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 C 1.52998 * 109.47320 * 42.30876 * 3 2 1 5 5 C 1.53001 * 109.47118 * 282.31268 * 3 2 1 6 6 C 1.52997 * 109.47424 * 59.99927 * 5 3 2 7 7 N 1.46500 * 109.47214 * 162.31504 * 3 2 1 8 8 C 1.38855 * 119.99745 * 303.85819 * 7 3 2 9 9 C 1.38724 * 120.18073 * 2.92465 * 8 7 3 10 10 C 1.38095 * 120.20125 * 180.02562 * 9 8 7 11 11 C 1.39417 * 120.57152 * 0.27594 * 10 9 8 12 12 O 1.35955 * 119.82306 * 179.70236 * 11 10 9 13 13 C 1.42899 * 116.99876 * 0.02562 * 12 11 10 14 14 C 1.37844 * 120.35304 * 359.44478 * 11 10 9 15 15 C 1.40703 * 119.79003 * 0.54880 * 14 11 10 16 16 C 1.41023 * 120.27922 * 179.69950 * 15 14 11 17 17 H 1.08003 * 120.00063 * 153.65607 * 16 15 14 18 18 C 1.39906 * 120.00026 * 333.66105 * 16 15 14 19 19 N 1.30890 * 120.00010 * 342.48157 * 18 16 15 20 20 Si 1.86806 * 119.99982 * 162.47622 * 18 16 15 21 21 H 1.48494 * 109.46802 * 94.98106 * 20 18 16 22 22 H 1.48493 * 109.47110 * 214.98444 * 20 18 16 23 23 H 1.48504 * 109.46928 * 334.98180 * 20 18 16 24 24 H 4.44649 * 5.63240 * 180.02562 * 4 1 2 25 25 H 1.08997 * 109.47241 * 186.65577 * 4 3 2 26 26 H 1.08997 * 109.47089 * 306.65784 * 4 3 2 27 27 H 1.09007 * 109.46752 * 66.65774 * 4 3 2 28 28 H 1.09003 * 109.47520 * 180.02562 * 5 3 2 29 29 H 1.09001 * 109.46801 * 299.99964 * 5 3 2 30 30 H 1.09001 * 109.47726 * 180.02562 * 6 5 3 31 31 H 1.09003 * 109.46680 * 300.00178 * 6 5 3 32 32 H 1.09001 * 109.47101 * 60.00221 * 6 5 3 33 33 H 0.97000 * 120.00269 * 123.86430 * 7 3 2 34 34 H 1.07994 * 119.89664 * 359.97438 * 9 8 7 35 35 H 1.07995 * 119.71430 * 180.02562 * 10 9 8 36 36 H 1.09001 * 109.47024 * 299.99573 * 13 12 11 37 37 H 1.09000 * 109.47029 * 59.99899 * 13 12 11 38 38 H 1.08998 * 109.47192 * 180.02562 * 13 12 11 39 39 H 1.08003 * 120.10668 * 180.27557 * 14 11 10 40 40 H 0.97003 * 119.99971 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1565 -1.0659 -0.9710 5 6 3.1561 -0.3067 1.4093 6 6 2.6468 -1.6812 1.8477 7 7 3.1338 1.3168 -0.4196 8 6 2.7333 1.8496 -1.6377 9 6 1.8244 1.1667 -2.4326 10 6 1.4262 1.6959 -3.6444 11 6 1.9346 2.9165 -4.0864 12 8 1.5367 3.4206 -5.2847 13 6 0.5976 2.6471 -6.0343 14 6 2.8345 3.6175 -3.3126 15 6 3.2506 3.0923 -2.0754 16 6 4.1756 3.7978 -1.2783 17 1 4.1830 3.6577 -0.2074 18 6 5.0838 4.6792 -1.8747 19 7 5.3192 4.6056 -3.1602 20 14 5.9602 5.9613 -0.8366 21 1 7.2857 5.4381 -0.4189 22 1 6.1457 7.2007 -1.6331 23 1 5.1457 6.2641 0.3677 24 1 -1.0498 -0.0001 -0.0003 25 1 4.2400 -1.1472 -0.8844 26 1 2.6996 -2.0256 -0.7295 27 1 2.8936 -0.7845 -1.9907 28 1 4.2462 -0.3058 1.4095 29 1 2.7924 0.4531 2.1011 30 1 3.0098 -1.9001 2.8519 31 1 1.5568 -1.6816 1.8476 32 1 3.0105 -2.4410 1.1559 33 1 3.7365 1.8160 0.1534 34 1 1.4277 0.2178 -2.1031 35 1 0.7179 1.1578 -4.2567 36 1 1.0264 1.6697 -6.2555 37 1 -0.3152 2.5201 -5.4522 38 1 0.3657 3.1612 -6.9670 39 1 3.2225 4.5649 -3.6569 40 1 5.9486 5.2169 -3.5738 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169701488.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:28 Heat of formation + Delta-G solvation = 40.942287 kcal Electronic energy + Delta-G solvation = -21161.247284 eV Core-core repulsion = 18135.860384 eV Total energy + Delta-G solvation = -3025.386899 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.02475 -37.99325 -35.94075 -33.42993 -32.12105 -31.66715 -29.73600 -28.61317 -27.69648 -26.02877 -25.06674 -23.85002 -21.75373 -20.73257 -19.98356 -17.66009 -17.19918 -16.29318 -15.76143 -15.39820 -14.82332 -14.74602 -14.65400 -14.28001 -13.76738 -13.24645 -13.03329 -12.47497 -12.38799 -11.98390 -11.84617 -11.67060 -11.51794 -11.39786 -11.17679 -11.07090 -10.95313 -10.89455 -10.74624 -10.48888 -10.25450 -10.07525 -9.94737 -9.66247 -9.13504 -9.03359 -8.41550 -7.34004 -6.69330 -5.95857 -4.15096 2.83554 3.12164 3.14673 3.17112 3.24006 3.27756 3.29997 3.99604 4.45902 4.57928 4.66770 4.74146 5.08536 5.21428 5.46957 5.67164 5.75234 5.78090 5.78705 5.86909 5.89770 6.00154 6.06074 6.13244 6.16533 6.26396 6.29644 6.44934 6.51028 6.69166 6.94947 7.04706 7.22114 7.51202 7.58811 7.70903 7.94400 8.05704 8.11477 8.30074 8.63658 8.83705 8.90617 9.01826 9.17660 10.30705 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.012147 B = 0.007854 C = 0.005116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2304.620401 B = 3564.324288 C = 5471.339778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.158 4.158 3 C 0.294 3.706 4 C -0.165 4.165 5 C -0.119 4.119 6 C -0.149 4.149 7 N -0.736 5.736 8 C 0.092 3.908 9 C -0.145 4.145 10 C -0.279 4.279 11 C 0.094 3.906 12 O -0.332 6.332 13 C 0.039 3.961 14 C -0.172 4.172 15 C 0.101 3.899 16 C -0.464 4.464 17 H 0.074 0.926 18 C 0.078 3.922 19 N -0.791 5.791 20 Si 0.902 3.098 21 H -0.273 1.273 22 H -0.276 1.276 23 H -0.262 1.262 24 H 0.210 0.790 25 H 0.063 0.937 26 H 0.056 0.944 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.068 0.932 30 H 0.054 0.946 31 H 0.056 0.944 32 H 0.059 0.941 33 H 0.398 0.602 34 H 0.103 0.897 35 H 0.091 0.909 36 H 0.042 0.958 37 H 0.041 0.959 38 H 0.079 0.921 39 H 0.123 0.877 40 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.061 -7.811 4.545 9.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.160 4.160 3 C 0.205 3.795 4 C -0.223 4.223 5 C -0.157 4.157 6 C -0.206 4.206 7 N -0.371 5.371 8 C -0.006 4.006 9 C -0.168 4.168 10 C -0.300 4.300 11 C 0.050 3.950 12 O -0.247 6.247 13 C -0.057 4.057 14 C -0.194 4.194 15 C 0.096 3.904 16 C -0.494 4.494 17 H 0.092 0.908 18 C -0.139 4.139 19 N -0.417 5.417 20 Si 0.726 3.274 21 H -0.198 1.198 22 H -0.202 1.202 23 H -0.186 1.186 24 H 0.227 0.773 25 H 0.082 0.918 26 H 0.075 0.925 27 H 0.094 0.906 28 H 0.094 0.906 29 H 0.086 0.914 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.234 0.766 34 H 0.121 0.879 35 H 0.109 0.891 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.098 0.902 39 H 0.141 0.859 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.899 -7.658 4.250 9.587 hybrid contribution 0.217 0.559 0.442 0.745 sum -3.682 -7.098 4.692 9.271 Atomic orbital electron populations 1.24734 0.95736 1.01157 1.02525 1.23555 0.94650 0.99351 0.98436 1.16892 0.82722 0.85970 0.93885 1.22402 1.01301 0.97276 1.01360 1.21683 1.01202 0.98113 0.94711 1.21780 1.01520 0.96518 1.00817 1.44007 1.54743 1.17902 1.20496 1.17767 1.00512 0.94104 0.88173 1.20111 1.00951 1.00130 0.95609 1.20202 1.10255 0.99151 1.00356 1.18815 0.97508 0.93781 0.84941 1.85991 1.59664 1.47876 1.31141 1.22689 0.92009 0.95993 0.95012 1.20255 1.01084 1.01534 0.96485 1.16937 0.92101 0.89139 0.92190 1.19093 1.14215 1.21613 0.94466 0.90803 1.25785 0.96136 0.97009 0.95002 1.69870 1.28034 1.32382 1.11398 0.86415 0.79644 0.80481 0.80829 1.19815 1.20150 1.18617 0.77340 0.91792 0.92517 0.90554 0.90632 0.91353 0.92696 0.92484 0.92204 0.76595 0.87908 0.89103 0.93954 0.94017 0.90221 0.85903 0.91057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.52 19.00 29.55 0.56 -2.96 16 2 C -0.16 -2.72 7.79 -37.12 -0.29 -3.01 16 3 C 0.29 4.90 0.79 -134.60 -0.11 4.79 16 4 C -0.17 -2.62 7.76 37.16 0.29 -2.33 16 5 C -0.12 -1.59 5.08 -26.73 -0.14 -1.73 16 6 C -0.15 -1.66 9.31 37.16 0.35 -1.31 16 7 N -0.74 -14.92 5.14 -48.15 -0.25 -15.17 16 8 C 0.09 2.21 6.26 -83.24 -0.52 1.69 16 9 C -0.15 -3.34 7.25 -39.45 -0.29 -3.63 16 10 C -0.28 -6.55 9.03 -39.19 -0.35 -6.90 16 11 C 0.09 2.37 6.67 -39.29 -0.26 2.11 16 12 O -0.33 -7.71 10.49 -19.60 -0.21 -7.92 16 13 C 0.04 0.67 9.81 101.05 0.99 1.67 16 14 C -0.17 -4.72 8.59 -38.80 -0.33 -5.05 16 15 C 0.10 2.68 5.57 -106.65 -0.59 2.09 16 16 C -0.46 -11.99 8.49 -37.90 -0.32 -12.32 16 17 H 0.07 1.80 6.68 -52.48 -0.35 1.45 16 18 C 0.08 1.97 5.13 -17.33 -0.09 1.88 16 19 N -0.79 -20.92 11.06 55.55 0.61 -20.31 16 20 Si 0.90 18.77 29.59 -169.99 -5.03 13.74 16 21 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 22 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 23 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 24 H 0.21 2.54 7.80 -54.10 -0.42 2.12 16 25 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 26 H 0.06 0.76 6.79 -51.93 -0.35 0.41 16 27 H 0.08 1.39 5.38 -51.93 -0.28 1.11 16 28 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.66 7.23 -51.93 -0.38 0.29 16 32 H 0.06 0.63 6.58 -51.93 -0.34 0.29 16 33 H 0.40 7.90 6.69 -40.82 -0.27 7.63 16 34 H 0.10 2.18 4.03 -52.49 -0.21 1.97 16 35 H 0.09 1.91 6.26 -52.49 -0.33 1.58 16 36 H 0.04 0.70 7.65 -51.93 -0.40 0.30 16 37 H 0.04 0.68 7.65 -51.93 -0.40 0.28 16 38 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 39 H 0.12 3.54 6.29 -52.48 -0.33 3.21 16 40 H 0.28 6.76 8.30 -40.82 -0.34 6.42 16 LS Contribution 322.16 15.07 4.85 4.85 Total: -1.00 -29.48 322.16 -6.43 -35.90 By element: Atomic # 1 Polarization: 19.21 SS G_CDS: -5.31 Total: 13.91 kcal Atomic # 6 Polarization: -23.91 SS G_CDS: -1.11 Total: -25.02 kcal Atomic # 7 Polarization: -35.84 SS G_CDS: 0.37 Total: -35.48 kcal Atomic # 8 Polarization: -7.71 SS G_CDS: -0.21 Total: -7.92 kcal Atomic # 14 Polarization: 18.77 SS G_CDS: -5.03 Total: 13.74 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -29.48 -6.43 -35.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169701488.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.847 kcal (2) G-P(sol) polarization free energy of solvation -29.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.905 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds