Wall clock time and date at job start Mon Mar 30 2020 01:20:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 C 1.52998 * 109.47320 * 42.30876 * 3 2 1 5 5 C 1.53001 * 109.47118 * 282.31268 * 3 2 1 6 6 C 1.52997 * 109.47424 * 59.99927 * 5 3 2 7 7 N 1.46500 * 109.47214 * 162.31504 * 3 2 1 8 8 C 1.38855 * 119.99745 * 303.85819 * 7 3 2 9 9 C 1.38724 * 120.18073 * 2.92465 * 8 7 3 10 10 C 1.38095 * 120.20125 * 180.02562 * 9 8 7 11 11 C 1.39417 * 120.57152 * 0.27594 * 10 9 8 12 12 O 1.35955 * 119.82306 * 179.70236 * 11 10 9 13 13 C 1.42899 * 116.99876 * 0.02562 * 12 11 10 14 14 C 1.37844 * 120.35304 * 359.44478 * 11 10 9 15 15 C 1.40703 * 119.79003 * 0.54880 * 14 11 10 16 16 C 1.41023 * 120.27922 * 179.69950 * 15 14 11 17 17 H 1.08003 * 120.00063 * 153.65607 * 16 15 14 18 18 C 1.39906 * 120.00026 * 333.66105 * 16 15 14 19 19 N 1.30890 * 120.00010 * 342.48157 * 18 16 15 20 20 Si 1.86806 * 119.99982 * 162.47622 * 18 16 15 21 21 H 1.48494 * 109.46802 * 94.98106 * 20 18 16 22 22 H 1.48493 * 109.47110 * 214.98444 * 20 18 16 23 23 H 1.48504 * 109.46928 * 334.98180 * 20 18 16 24 24 H 4.44649 * 5.63240 * 180.02562 * 4 1 2 25 25 H 1.08997 * 109.47241 * 186.65577 * 4 3 2 26 26 H 1.08997 * 109.47089 * 306.65784 * 4 3 2 27 27 H 1.09007 * 109.46752 * 66.65774 * 4 3 2 28 28 H 1.09003 * 109.47520 * 180.02562 * 5 3 2 29 29 H 1.09001 * 109.46801 * 299.99964 * 5 3 2 30 30 H 1.09001 * 109.47726 * 180.02562 * 6 5 3 31 31 H 1.09003 * 109.46680 * 300.00178 * 6 5 3 32 32 H 1.09001 * 109.47101 * 60.00221 * 6 5 3 33 33 H 0.97000 * 120.00269 * 123.86430 * 7 3 2 34 34 H 1.07994 * 119.89664 * 359.97438 * 9 8 7 35 35 H 1.07995 * 119.71430 * 180.02562 * 10 9 8 36 36 H 1.09001 * 109.47024 * 299.99573 * 13 12 11 37 37 H 1.09000 * 109.47029 * 59.99899 * 13 12 11 38 38 H 1.08998 * 109.47192 * 180.02562 * 13 12 11 39 39 H 1.08003 * 120.10668 * 180.27557 * 14 11 10 40 40 H 0.97003 * 119.99971 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1565 -1.0659 -0.9710 5 6 3.1561 -0.3067 1.4093 6 6 2.6468 -1.6812 1.8477 7 7 3.1338 1.3168 -0.4196 8 6 2.7333 1.8496 -1.6377 9 6 1.8244 1.1667 -2.4326 10 6 1.4262 1.6959 -3.6444 11 6 1.9346 2.9165 -4.0864 12 8 1.5367 3.4206 -5.2847 13 6 0.5976 2.6471 -6.0343 14 6 2.8345 3.6175 -3.3126 15 6 3.2506 3.0923 -2.0754 16 6 4.1756 3.7978 -1.2783 17 1 4.1830 3.6577 -0.2074 18 6 5.0838 4.6792 -1.8747 19 7 5.3192 4.6056 -3.1602 20 14 5.9602 5.9613 -0.8366 21 1 7.2857 5.4381 -0.4189 22 1 6.1457 7.2007 -1.6331 23 1 5.1457 6.2641 0.3677 24 1 -1.0498 -0.0001 -0.0003 25 1 4.2400 -1.1472 -0.8844 26 1 2.6996 -2.0256 -0.7295 27 1 2.8936 -0.7845 -1.9907 28 1 4.2462 -0.3058 1.4095 29 1 2.7924 0.4531 2.1011 30 1 3.0098 -1.9001 2.8519 31 1 1.5568 -1.6816 1.8476 32 1 3.0105 -2.4410 1.1559 33 1 3.7365 1.8160 0.1534 34 1 1.4277 0.2178 -2.1031 35 1 0.7179 1.1578 -4.2567 36 1 1.0264 1.6697 -6.2555 37 1 -0.3152 2.5201 -5.4522 38 1 0.3657 3.1612 -6.9670 39 1 3.2225 4.5649 -3.6569 40 1 5.9486 5.2169 -3.5738 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169701488.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:27 Heat of formation + Delta-G solvation = 24.036328 kcal Electronic energy + Delta-G solvation = -21161.980381 eV Core-core repulsion = 18135.860384 eV Total energy + Delta-G solvation = -3026.119997 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.69258 -39.54495 -37.59262 -35.26823 -33.66052 -32.87358 -31.54022 -30.03839 -29.24053 -27.55475 -26.90102 -25.14993 -23.22510 -22.28384 -21.74584 -19.46364 -18.54767 -18.05085 -17.48308 -16.90242 -16.51883 -16.26605 -15.96519 -15.82339 -15.21475 -14.68216 -14.47286 -14.08447 -13.96281 -13.52295 -13.30616 -13.10664 -12.99681 -12.87762 -12.76595 -12.62511 -12.41610 -12.23071 -12.05902 -11.93415 -11.82691 -11.68458 -11.38144 -11.12426 -10.94421 -10.69076 -10.10065 -9.28708 -8.58206 -7.77044 -6.09185 1.00763 1.34352 1.40226 1.51244 1.55990 1.90415 2.00916 2.24282 2.79544 2.91067 3.14667 3.48285 3.81861 3.95657 4.12721 4.39558 4.46685 4.48701 4.53701 4.57073 4.64387 4.71325 4.75187 4.77097 4.98397 5.08876 5.11906 5.13220 5.16057 5.22091 5.31973 5.41841 5.48482 5.61373 5.76987 5.86212 6.02809 6.22730 6.40162 6.79505 6.82233 6.98612 7.04393 7.25319 7.37371 8.44574 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.012147 B = 0.007854 C = 0.005116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2304.620401 B = 3564.324288 C = 5471.339778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.197 4.197 3 C 0.287 3.713 4 C -0.161 4.161 5 C -0.115 4.115 6 C -0.143 4.143 7 N -0.737 5.737 8 C 0.095 3.905 9 C -0.149 4.149 10 C -0.277 4.277 11 C 0.081 3.919 12 O -0.356 6.356 13 C 0.030 3.970 14 C -0.205 4.205 15 C 0.069 3.931 16 C -0.487 4.487 17 H 0.081 0.919 18 C 0.034 3.966 19 N -0.830 5.830 20 Si 0.976 3.024 21 H -0.262 1.262 22 H -0.275 1.275 23 H -0.258 1.258 24 H 0.240 0.760 25 H 0.067 0.933 26 H 0.082 0.918 27 H 0.049 0.951 28 H 0.082 0.918 29 H 0.064 0.936 30 H 0.074 0.926 31 H 0.051 0.949 32 H 0.066 0.934 33 H 0.396 0.604 34 H 0.124 0.876 35 H 0.118 0.882 36 H 0.050 0.950 37 H 0.053 0.947 38 H 0.113 0.887 39 H 0.095 0.905 40 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.835 -9.221 5.776 11.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.198 4.198 3 C 0.199 3.801 4 C -0.219 4.219 5 C -0.153 4.153 6 C -0.200 4.200 7 N -0.371 5.371 8 C -0.005 4.005 9 C -0.172 4.172 10 C -0.297 4.297 11 C 0.036 3.964 12 O -0.272 6.272 13 C -0.065 4.065 14 C -0.227 4.227 15 C 0.064 3.936 16 C -0.517 4.517 17 H 0.099 0.901 18 C -0.180 4.180 19 N -0.457 5.457 20 Si 0.797 3.203 21 H -0.187 1.187 22 H -0.200 1.200 23 H -0.181 1.181 24 H 0.257 0.743 25 H 0.086 0.914 26 H 0.101 0.899 27 H 0.068 0.932 28 H 0.101 0.899 29 H 0.083 0.917 30 H 0.093 0.907 31 H 0.070 0.930 32 H 0.085 0.915 33 H 0.232 0.768 34 H 0.141 0.859 35 H 0.136 0.864 36 H 0.068 0.932 37 H 0.072 0.928 38 H 0.132 0.868 39 H 0.113 0.887 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -4.687 -9.105 5.495 11.622 hybrid contribution 0.334 0.897 0.002 0.958 sum -4.353 -8.207 5.498 10.795 Atomic orbital electron populations 1.25562 0.96666 0.99439 1.01053 1.23792 0.95251 1.00911 0.99870 1.17213 0.82991 0.84095 0.95773 1.22352 1.01778 0.98261 0.99489 1.21685 1.01627 0.99436 0.92514 1.21748 1.01169 0.95025 1.02088 1.44173 1.54434 1.19264 1.19185 1.17890 0.99896 0.93333 0.89392 1.20374 1.00651 1.00776 0.95388 1.20523 1.10053 0.98425 1.00698 1.18891 0.97488 0.94313 0.85671 1.85944 1.61063 1.49451 1.30693 1.23055 0.91208 0.96431 0.95778 1.20209 1.03046 1.01383 0.98047 1.17295 0.93107 0.90642 0.92548 1.19367 1.14727 1.22771 0.94833 0.90071 1.26665 0.96683 0.98578 0.96046 1.69968 1.29014 1.33447 1.13246 0.85287 0.78618 0.77431 0.78917 1.18654 1.19972 1.18148 0.74325 0.91415 0.89880 0.93213 0.89896 0.91729 0.90732 0.92960 0.91480 0.76816 0.85851 0.86430 0.93183 0.92843 0.86840 0.88739 0.90721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -6.05 19.00 74.32 1.41 -4.64 16 2 C -0.20 -6.39 7.79 31.13 0.24 -6.14 16 3 C 0.29 9.16 0.79 1.80 0.00 9.16 16 4 C -0.16 -4.84 7.76 71.98 0.56 -4.29 16 5 C -0.11 -2.85 5.08 30.59 0.16 -2.69 16 6 C -0.14 -2.78 9.31 71.98 0.67 -2.11 16 7 N -0.74 -29.80 5.14 -306.25 -1.57 -31.37 16 8 C 0.09 4.58 6.26 38.96 0.24 4.82 16 9 C -0.15 -6.79 7.25 22.35 0.16 -6.63 16 10 C -0.28 -12.86 9.03 22.52 0.20 -12.66 16 11 C 0.08 4.20 6.67 22.46 0.15 4.35 16 12 O -0.36 -16.74 10.49 -93.04 -0.98 -17.72 16 13 C 0.03 0.99 9.81 113.37 1.11 2.10 16 14 C -0.21 -11.79 8.59 22.78 0.20 -11.59 16 15 C 0.07 3.78 5.57 -21.18 -0.12 3.67 16 16 C -0.49 -26.00 8.49 23.36 0.20 -25.81 16 17 H 0.08 4.04 6.68 -2.91 -0.02 4.02 16 18 C 0.03 1.77 5.13 85.24 0.44 2.21 16 19 N -0.83 -45.80 11.06 21.82 0.24 -45.56 16 20 Si 0.98 39.24 29.59 68.60 2.03 41.27 16 21 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 22 H -0.27 -10.85 7.11 99.48 0.71 -10.15 16 23 H -0.26 -10.06 7.11 99.48 0.71 -9.36 16 24 H 0.24 4.98 7.80 -4.43 -0.03 4.94 16 25 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 26 H 0.08 2.03 6.79 -2.39 -0.02 2.01 16 27 H 0.05 1.76 5.38 -2.38 -0.01 1.75 16 28 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 29 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.05 1.07 7.23 -2.39 -0.02 1.06 16 32 H 0.07 1.20 6.58 -2.39 -0.02 1.19 16 33 H 0.40 15.87 6.69 -92.71 -0.62 15.25 16 34 H 0.12 5.06 4.03 -2.91 -0.01 5.05 16 35 H 0.12 4.71 6.26 -2.91 -0.02 4.69 16 36 H 0.05 1.56 7.65 -2.39 -0.02 1.54 16 37 H 0.05 1.63 7.65 -2.39 -0.02 1.61 16 38 H 0.11 2.92 8.14 -2.39 -0.02 2.90 16 39 H 0.09 5.83 6.29 -2.91 -0.02 5.81 16 40 H 0.28 14.28 8.30 -92.71 -0.77 13.51 16 Total: -1.00 -66.26 322.16 5.78 -60.48 By element: Atomic # 1 Polarization: 42.72 SS G_CDS: 0.43 Total: 43.16 kcal Atomic # 6 Polarization: -55.87 SS G_CDS: 5.62 Total: -50.25 kcal Atomic # 7 Polarization: -75.60 SS G_CDS: -1.33 Total: -76.94 kcal Atomic # 8 Polarization: -16.74 SS G_CDS: -0.98 Total: -17.72 kcal Atomic # 14 Polarization: 39.24 SS G_CDS: 2.03 Total: 41.27 kcal Total: -66.26 5.78 -60.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169701488.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.515 kcal (2) G-P(sol) polarization free energy of solvation -66.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.478 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds