Wall clock time and date at job start Mon Mar 30 2020 01:20:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.52991 * 109.47644 * 6.71437 * 3 2 1 5 5 C 1.52999 * 109.46966 * 246.70654 * 3 2 1 6 6 C 1.52995 * 109.47815 * 295.75796 * 5 3 2 7 7 N 1.46506 * 109.46815 * 126.71414 * 3 2 1 8 8 C 1.39939 * 119.99943 * 185.78591 * 7 3 2 9 9 C 1.38864 * 120.01663 * 172.84488 * 8 7 3 10 10 C 1.38105 * 119.97600 * 179.70001 * 9 8 7 11 11 C 1.38698 * 120.02473 * 0.25049 * 10 9 8 12 12 O 1.36001 * 119.98661 * 180.02562 * 11 10 9 13 13 C 1.42895 * 117.00246 * 180.02562 * 12 11 10 14 14 C 1.50704 * 109.47085 * 179.97438 * 13 12 11 15 15 H 1.08003 * 119.99975 * 0.02562 * 14 13 12 16 16 C 1.37878 * 119.99725 * 179.97438 * 14 13 12 17 17 N 1.31512 * 120.00529 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99843 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46854 * 59.99775 * 18 16 14 20 20 H 1.48502 * 109.47207 * 179.97438 * 18 16 14 21 21 H 1.48494 * 109.47153 * 300.00096 * 18 16 14 22 22 C 1.38702 * 120.03548 * 0.02562 * 11 10 9 23 23 C 1.38116 * 120.02029 * 359.97438 * 22 11 10 24 24 H 4.44644 * 5.63340 * 179.97438 * 4 1 2 25 25 H 1.09002 * 109.47412 * 185.11983 * 4 3 2 26 26 H 1.09003 * 109.46873 * 305.12137 * 4 3 2 27 27 H 1.09008 * 109.47284 * 65.11595 * 4 3 2 28 28 H 1.09007 * 109.46484 * 55.76242 * 5 3 2 29 29 H 1.09007 * 109.47134 * 175.75384 * 5 3 2 30 30 H 1.08993 * 109.47498 * 179.97438 * 6 5 3 31 31 H 1.08997 * 109.47136 * 300.00326 * 6 5 3 32 32 H 1.09000 * 109.46924 * 59.99911 * 6 5 3 33 33 H 0.97006 * 119.99661 * 5.78746 * 7 3 2 34 34 H 1.07995 * 120.00932 * 359.96995 * 9 8 7 35 35 H 1.08006 * 119.98788 * 180.27638 * 10 9 8 36 36 H 1.08998 * 109.47186 * 299.99838 * 13 12 11 37 37 H 1.08998 * 109.47594 * 60.00016 * 13 12 11 38 38 H 0.96994 * 120.00277 * 179.97438 * 17 16 14 39 39 H 1.08005 * 119.99391 * 180.02562 * 22 11 10 40 40 H 1.07999 * 120.01105 * 180.02562 * 23 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 6 3.1568 -1.4316 -0.1686 5 6 3.1558 0.5713 1.3249 6 6 2.7342 2.0371 1.4449 7 7 3.1340 0.8266 -1.1073 8 6 4.5039 0.8835 -1.3870 9 6 4.9543 1.5439 -2.5225 10 6 6.3069 1.6048 -2.7944 11 6 7.2151 1.0021 -1.9367 12 8 8.5470 1.0630 -2.2050 13 6 9.4253 0.4199 -1.2793 14 6 10.8507 0.5905 -1.7379 15 1 11.0645 1.1359 -2.6453 16 6 11.8820 0.0512 -0.9985 17 7 11.6219 -0.6116 0.1072 18 14 13.6488 0.2621 -1.5672 19 1 13.9765 1.7087 -1.6384 20 1 14.5617 -0.4051 -0.6045 21 1 13.8127 -0.3492 -2.9105 22 6 6.7657 0.3373 -0.8054 23 6 5.4133 0.2754 -0.5318 24 1 -1.0497 -0.0005 0.0001 25 1 4.2430 -1.4431 -0.0777 26 1 2.7208 -2.0660 0.6031 27 1 2.8704 -1.8062 -1.1515 28 1 2.7319 0.0024 2.1525 29 1 4.2432 0.5023 1.3559 30 1 3.0969 2.4435 2.3890 31 1 3.1579 2.6060 0.6173 32 1 1.6468 2.1061 1.4140 33 1 2.5073 1.3342 -1.6465 34 1 4.2473 2.0135 -3.1903 35 1 6.6577 2.1223 -3.6752 36 1 9.3046 0.8676 -0.2929 37 1 9.1852 -0.6421 -1.2282 38 1 12.3473 -0.9912 0.6272 39 1 7.4735 -0.1314 -0.1377 40 1 5.0636 -0.2419 0.3494 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169702118.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:41 Heat of formation + Delta-G solvation = 50.946607 kcal Electronic energy + Delta-G solvation = -20335.127853 eV Core-core repulsion = 17310.174774 eV Total energy + Delta-G solvation = -3024.953079 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.96786 -38.34525 -36.15216 -33.02948 -32.55412 -32.01961 -30.71246 -29.76972 -28.13862 -26.94397 -24.04884 -23.52960 -22.05348 -21.87027 -20.64860 -18.28010 -17.44427 -16.51532 -16.34443 -15.98032 -14.94797 -14.72869 -14.49273 -14.43800 -14.19056 -13.85993 -13.46758 -13.19948 -12.75744 -12.44329 -12.37395 -12.20467 -11.76801 -11.58849 -11.49076 -11.30544 -11.04856 -11.03165 -10.93071 -10.69474 -10.63453 -10.26477 -10.20931 -9.98109 -9.19783 -9.01356 -8.52930 -8.42938 -6.61803 -6.19933 -4.22976 1.81862 2.17833 2.35633 2.57769 3.28905 3.31571 3.35228 3.71274 3.97397 4.24646 4.36302 4.65285 4.69756 4.97035 5.10922 5.17085 5.28148 5.36820 5.41143 5.43852 5.50579 5.70480 5.76913 5.85493 5.87665 5.89541 6.04596 6.08212 6.18615 6.21763 6.44730 6.62823 6.70232 6.88311 7.10842 7.19152 7.24297 7.30258 7.59804 7.73897 7.92268 8.03824 8.61782 8.92808 9.42149 10.91369 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.034723 B = 0.003439 C = 0.003301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.186615 B = 8139.022450 C = 8480.194607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.177 4.177 3 C 0.298 3.702 4 C -0.174 4.174 5 C -0.144 4.144 6 C -0.145 4.145 7 N -0.745 5.745 8 C 0.162 3.838 9 C -0.153 4.153 10 C -0.125 4.125 11 C 0.104 3.896 12 O -0.323 6.323 13 C 0.195 3.805 14 C -0.523 4.523 15 H 0.069 0.931 16 C 0.060 3.940 17 N -0.896 5.896 18 Si 0.912 3.088 19 H -0.274 1.274 20 H -0.285 1.285 21 H -0.274 1.274 22 C -0.168 4.168 23 C -0.167 4.167 24 H 0.219 0.781 25 H 0.088 0.912 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.069 0.931 29 H 0.090 0.910 30 H 0.053 0.947 31 H 0.062 0.938 32 H 0.048 0.952 33 H 0.395 0.605 34 H 0.117 0.883 35 H 0.124 0.876 36 H 0.019 0.981 37 H 0.019 0.981 38 H 0.267 0.733 39 H 0.132 0.868 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.621 1.259 1.339 20.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.177 4.177 3 C 0.211 3.789 4 C -0.232 4.232 5 C -0.182 4.182 6 C -0.202 4.202 7 N -0.379 5.379 8 C 0.064 3.936 9 C -0.176 4.176 10 C -0.144 4.144 11 C 0.056 3.944 12 O -0.237 6.237 13 C 0.122 3.878 14 C -0.561 4.561 15 H 0.087 0.913 16 C -0.142 4.142 17 N -0.534 5.534 18 Si 0.739 3.261 19 H -0.199 1.199 20 H -0.210 1.210 21 H -0.199 1.199 22 C -0.188 4.188 23 C -0.188 4.188 24 H 0.235 0.765 25 H 0.107 0.893 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.087 0.913 29 H 0.108 0.892 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.067 0.933 33 H 0.229 0.771 34 H 0.135 0.865 35 H 0.142 0.858 36 H 0.036 0.964 37 H 0.036 0.964 38 H 0.076 0.924 39 H 0.150 0.850 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -20.378 1.126 1.479 20.462 hybrid contribution 0.398 0.054 -0.131 0.422 sum -19.980 1.180 1.348 20.060 Atomic orbital electron populations 1.24919 0.95797 1.00489 0.99697 1.22830 0.93802 1.00300 1.00774 1.16953 0.82443 0.91505 0.88004 1.22523 1.03777 0.94220 1.02698 1.22262 1.02993 0.97286 0.95692 1.21662 1.00709 0.95914 1.01932 1.44454 1.03998 1.53643 1.35811 1.17442 0.83129 0.98514 0.94553 1.20235 0.94930 1.05017 0.97368 1.20151 0.91187 1.02801 1.00247 1.19077 0.85343 0.96096 0.93858 1.86104 1.12138 1.73283 1.52135 1.20539 0.87389 0.92048 0.87783 1.20968 0.89181 1.35728 1.10192 0.91285 1.24926 0.99841 0.94745 0.94708 1.69937 1.33100 1.35494 1.14877 0.86327 0.82680 0.78591 0.78516 1.19891 1.21042 1.19887 1.21292 0.95952 1.02878 0.98637 1.20953 0.92242 1.04872 1.00748 0.76458 0.89339 0.91700 0.91719 0.91272 0.89161 0.92819 0.91938 0.93291 0.77065 0.86501 0.85832 0.96362 0.96367 0.92363 0.85039 0.84828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.62 19.25 29.55 0.57 -1.05 16 2 C -0.18 -1.81 10.82 -37.12 -0.40 -2.21 16 3 C 0.30 3.23 0.68 -134.61 -0.09 3.14 16 4 C -0.17 -1.90 8.13 37.15 0.30 -1.60 16 5 C -0.14 -1.53 4.70 -26.73 -0.13 -1.66 16 6 C -0.14 -1.52 9.51 37.16 0.35 -1.16 16 7 N -0.75 -8.68 4.29 -48.55 -0.21 -8.89 16 8 C 0.16 2.32 6.23 -83.70 -0.52 1.80 16 9 C -0.15 -2.27 9.90 -39.40 -0.39 -2.66 16 10 C -0.12 -2.19 9.98 -39.46 -0.39 -2.58 16 11 C 0.10 2.18 6.69 -39.24 -0.26 1.91 16 12 O -0.32 -8.03 10.12 -19.74 -0.20 -8.23 16 13 C 0.20 5.28 4.49 36.01 0.16 5.45 16 14 C -0.52 -15.16 9.43 -34.44 -0.32 -15.49 16 15 H 0.07 1.98 7.81 -52.48 -0.41 1.57 16 16 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 17 N -0.90 -26.16 13.29 55.43 0.74 -25.42 16 18 Si 0.91 21.49 29.54 -169.99 -5.02 16.47 16 19 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 22 C -0.17 -3.21 9.03 -39.45 -0.36 -3.57 16 23 C -0.17 -2.61 7.06 -39.40 -0.28 -2.89 16 24 H 0.22 1.06 7.80 -54.11 -0.42 0.64 16 25 H 0.09 1.04 4.64 -51.93 -0.24 0.80 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.06 0.73 8.14 -51.92 -0.42 0.31 16 28 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.09 1.05 4.88 -51.92 -0.25 0.79 16 30 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.72 7.49 -51.93 -0.39 0.33 16 32 H 0.05 0.48 7.36 -51.93 -0.38 0.10 16 33 H 0.40 4.13 8.48 -40.82 -0.35 3.79 16 34 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 35 H 0.12 2.02 8.06 -52.48 -0.42 1.59 16 36 H 0.02 0.51 7.66 -51.93 -0.40 0.12 16 37 H 0.02 0.51 7.66 -51.93 -0.40 0.12 16 38 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 39 H 0.13 2.65 6.29 -52.48 -0.33 2.32 16 40 H 0.13 1.82 3.14 -52.49 -0.17 1.66 16 LS Contribution 330.11 15.07 4.97 4.97 Total: -1.00 -30.47 330.11 -6.98 -37.45 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: -5.41 Total: 4.60 kcal Atomic # 6 Polarization: -19.10 SS G_CDS: -1.86 Total: -20.95 kcal Atomic # 7 Polarization: -34.83 SS G_CDS: 0.53 Total: -34.31 kcal Atomic # 8 Polarization: -8.03 SS G_CDS: -0.20 Total: -8.23 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -30.47 -6.98 -37.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169702118.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.400 kcal (2) G-P(sol) polarization free energy of solvation -30.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.454 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds