Wall clock time and date at job start Mon Mar 30 2020 01:20:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.52991 * 109.47644 * 6.71437 * 3 2 1 5 5 C 1.52999 * 109.46966 * 246.70654 * 3 2 1 6 6 C 1.52995 * 109.47815 * 295.75796 * 5 3 2 7 7 N 1.46506 * 109.46815 * 126.71414 * 3 2 1 8 8 C 1.39939 * 119.99943 * 185.78591 * 7 3 2 9 9 C 1.38864 * 120.01663 * 172.84488 * 8 7 3 10 10 C 1.38105 * 119.97600 * 179.70001 * 9 8 7 11 11 C 1.38698 * 120.02473 * 0.25049 * 10 9 8 12 12 O 1.36001 * 119.98661 * 180.02562 * 11 10 9 13 13 C 1.42895 * 117.00246 * 180.02562 * 12 11 10 14 14 C 1.50704 * 109.47085 * 179.97438 * 13 12 11 15 15 H 1.08003 * 119.99975 * 0.02562 * 14 13 12 16 16 C 1.37878 * 119.99725 * 179.97438 * 14 13 12 17 17 N 1.31512 * 120.00529 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99843 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46854 * 59.99775 * 18 16 14 20 20 H 1.48502 * 109.47207 * 179.97438 * 18 16 14 21 21 H 1.48494 * 109.47153 * 300.00096 * 18 16 14 22 22 C 1.38702 * 120.03548 * 0.02562 * 11 10 9 23 23 C 1.38116 * 120.02029 * 359.97438 * 22 11 10 24 24 H 4.44644 * 5.63340 * 179.97438 * 4 1 2 25 25 H 1.09002 * 109.47412 * 185.11983 * 4 3 2 26 26 H 1.09003 * 109.46873 * 305.12137 * 4 3 2 27 27 H 1.09008 * 109.47284 * 65.11595 * 4 3 2 28 28 H 1.09007 * 109.46484 * 55.76242 * 5 3 2 29 29 H 1.09007 * 109.47134 * 175.75384 * 5 3 2 30 30 H 1.08993 * 109.47498 * 179.97438 * 6 5 3 31 31 H 1.08997 * 109.47136 * 300.00326 * 6 5 3 32 32 H 1.09000 * 109.46924 * 59.99911 * 6 5 3 33 33 H 0.97006 * 119.99661 * 5.78746 * 7 3 2 34 34 H 1.07995 * 120.00932 * 359.96995 * 9 8 7 35 35 H 1.08006 * 119.98788 * 180.27638 * 10 9 8 36 36 H 1.08998 * 109.47186 * 299.99838 * 13 12 11 37 37 H 1.08998 * 109.47594 * 60.00016 * 13 12 11 38 38 H 0.96994 * 120.00277 * 179.97438 * 17 16 14 39 39 H 1.08005 * 119.99391 * 180.02562 * 22 11 10 40 40 H 1.07999 * 120.01105 * 180.02562 * 23 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 6 3.1568 -1.4316 -0.1686 5 6 3.1558 0.5713 1.3249 6 6 2.7342 2.0371 1.4449 7 7 3.1340 0.8266 -1.1073 8 6 4.5039 0.8835 -1.3870 9 6 4.9543 1.5439 -2.5225 10 6 6.3069 1.6048 -2.7944 11 6 7.2151 1.0021 -1.9367 12 8 8.5470 1.0630 -2.2050 13 6 9.4253 0.4199 -1.2793 14 6 10.8507 0.5905 -1.7379 15 1 11.0645 1.1359 -2.6453 16 6 11.8820 0.0512 -0.9985 17 7 11.6219 -0.6116 0.1072 18 14 13.6488 0.2621 -1.5672 19 1 13.9765 1.7087 -1.6384 20 1 14.5617 -0.4051 -0.6045 21 1 13.8127 -0.3492 -2.9105 22 6 6.7657 0.3373 -0.8054 23 6 5.4133 0.2754 -0.5318 24 1 -1.0497 -0.0005 0.0001 25 1 4.2430 -1.4431 -0.0777 26 1 2.7208 -2.0660 0.6031 27 1 2.8704 -1.8062 -1.1515 28 1 2.7319 0.0024 2.1525 29 1 4.2432 0.5023 1.3559 30 1 3.0969 2.4435 2.3890 31 1 3.1579 2.6060 0.6173 32 1 1.6468 2.1061 1.4140 33 1 2.5073 1.3342 -1.6465 34 1 4.2473 2.0135 -3.1903 35 1 6.6577 2.1223 -3.6752 36 1 9.3046 0.8676 -0.2929 37 1 9.1852 -0.6421 -1.2282 38 1 12.3473 -0.9912 0.6272 39 1 7.4735 -0.1314 -0.1377 40 1 5.0636 -0.2419 0.3494 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169702118.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:40 Heat of formation + Delta-G solvation = 33.510578 kcal Electronic energy + Delta-G solvation = -20335.883936 eV Core-core repulsion = 17310.174774 eV Total energy + Delta-G solvation = -3025.709162 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.21360 -39.75106 -37.55225 -35.04588 -33.71908 -32.90883 -31.95390 -30.82690 -29.88899 -28.51777 -25.40883 -24.92494 -23.38543 -23.08178 -21.94964 -19.27578 -19.02226 -18.33499 -17.75479 -17.07008 -16.57181 -16.33951 -15.86570 -15.77043 -15.49469 -14.91399 -14.63491 -14.47442 -14.17463 -13.94791 -13.63923 -13.29649 -13.18082 -13.02073 -12.88864 -12.69944 -12.45459 -12.36153 -12.23907 -12.01893 -11.96089 -11.55099 -11.40645 -11.25974 -11.08892 -10.73709 -10.25291 -9.84374 -8.37080 -7.95166 -6.51274 0.46405 0.77888 1.39542 1.44699 1.53061 1.59161 1.87855 2.30502 2.76499 2.93820 2.95948 2.99129 3.26081 3.78960 3.98792 4.04703 4.11632 4.31096 4.43634 4.47986 4.53291 4.63205 4.65985 4.76566 4.80800 4.93015 5.00803 5.02930 5.05040 5.12030 5.20466 5.25804 5.29407 5.36085 5.42270 5.50048 5.66027 5.80999 5.90352 6.39748 6.56121 6.64362 6.88924 6.96375 7.21925 8.75109 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.034723 B = 0.003439 C = 0.003301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.186615 B = 8139.022450 C = 8480.194607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.220 4.220 3 C 0.298 3.702 4 C -0.174 4.174 5 C -0.145 4.145 6 C -0.141 4.141 7 N -0.732 5.732 8 C 0.183 3.817 9 C -0.146 4.146 10 C -0.121 4.121 11 C 0.051 3.949 12 O -0.345 6.345 13 C 0.216 3.784 14 C -0.559 4.559 15 H 0.065 0.935 16 C 0.011 3.989 17 N -0.926 5.926 18 Si 0.988 3.012 19 H -0.264 1.264 20 H -0.273 1.273 21 H -0.264 1.264 22 C -0.180 4.180 23 C -0.166 4.166 24 H 0.252 0.748 25 H 0.074 0.926 26 H 0.079 0.921 27 H 0.059 0.941 28 H 0.082 0.918 29 H 0.075 0.925 30 H 0.056 0.944 31 H 0.049 0.951 32 H 0.057 0.943 33 H 0.405 0.595 34 H 0.155 0.845 35 H 0.134 0.866 36 H -0.003 1.003 37 H -0.003 1.003 38 H 0.274 0.726 39 H 0.107 0.893 40 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.892 1.651 0.980 22.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.220 4.220 3 C 0.211 3.789 4 C -0.232 4.232 5 C -0.183 4.183 6 C -0.198 4.198 7 N -0.365 5.365 8 C 0.082 3.918 9 C -0.168 4.168 10 C -0.140 4.140 11 C 0.004 3.996 12 O -0.260 6.260 13 C 0.142 3.858 14 C -0.596 4.596 15 H 0.084 0.916 16 C -0.189 4.189 17 N -0.565 5.565 18 Si 0.809 3.191 19 H -0.189 1.189 20 H -0.197 1.197 21 H -0.189 1.189 22 C -0.199 4.199 23 C -0.188 4.188 24 H 0.268 0.732 25 H 0.092 0.908 26 H 0.098 0.902 27 H 0.079 0.921 28 H 0.101 0.899 29 H 0.094 0.906 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.076 0.924 33 H 0.242 0.758 34 H 0.173 0.827 35 H 0.152 0.848 36 H 0.014 0.986 37 H 0.014 0.986 38 H 0.082 0.918 39 H 0.125 0.875 40 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -22.717 1.522 1.123 22.796 hybrid contribution 0.779 -0.083 0.036 0.784 sum -21.938 1.439 1.160 22.016 Atomic orbital electron populations 1.25740 0.96506 0.98113 0.97296 1.22729 0.93839 1.02492 1.02986 1.16930 0.83567 0.90973 0.87411 1.22503 1.02866 0.94800 1.03030 1.22254 1.02072 0.97761 0.96249 1.21621 1.01167 0.95442 1.01599 1.44511 1.02797 1.53231 1.35948 1.17511 0.84281 0.96431 0.93579 1.20576 0.94239 1.04276 0.97744 1.20369 0.91826 1.01999 0.99842 1.19488 0.84067 0.99703 0.96297 1.86010 1.14183 1.73941 1.51818 1.20045 0.87720 0.90682 0.87323 1.21328 0.90559 1.36944 1.10757 0.91642 1.25974 1.04741 0.93684 0.94467 1.70051 1.34922 1.35675 1.15804 0.85172 0.76334 0.79070 0.78476 1.18902 1.19725 1.18889 1.21186 0.97185 1.03404 0.98174 1.21112 0.90897 1.05034 1.01757 0.73218 0.90762 0.90186 0.92145 0.89938 0.90629 0.92478 0.93219 0.92408 0.75848 0.82721 0.84819 0.98568 0.98560 0.91757 0.87542 0.82953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.04 19.25 74.32 1.43 -0.61 16 2 C -0.22 -3.81 10.82 31.13 0.34 -3.48 16 3 C 0.30 5.85 0.68 1.79 0.00 5.85 16 4 C -0.17 -3.55 8.13 71.98 0.59 -2.97 16 5 C -0.15 -2.86 4.70 30.59 0.14 -2.72 16 6 C -0.14 -2.70 9.51 71.98 0.68 -2.01 16 7 N -0.73 -15.36 4.29 -307.52 -1.32 -16.68 16 8 C 0.18 5.01 6.23 38.15 0.24 5.24 16 9 C -0.15 -4.06 9.90 22.39 0.22 -3.84 16 10 C -0.12 -4.27 9.98 22.35 0.22 -4.05 16 11 C 0.05 2.24 6.69 22.49 0.15 2.39 16 12 O -0.34 -18.35 10.12 -93.56 -0.95 -19.29 16 13 C 0.22 12.58 4.49 71.24 0.32 12.90 16 14 C -0.56 -33.87 9.43 25.60 0.24 -33.63 16 15 H 0.07 3.90 7.81 -2.91 -0.02 3.88 16 16 C 0.01 0.62 5.46 84.66 0.46 1.08 16 17 N -0.93 -55.68 13.29 21.45 0.28 -55.39 16 18 Si 0.99 44.40 29.54 68.60 2.03 46.43 16 19 H -0.26 -11.44 7.11 99.48 0.71 -10.74 16 20 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 21 H -0.26 -11.43 7.11 99.48 0.71 -10.73 16 22 C -0.18 -7.36 9.03 22.35 0.20 -7.16 16 23 C -0.17 -5.30 7.06 22.39 0.16 -5.14 16 24 H 0.25 1.16 7.80 -4.43 -0.03 1.13 16 25 H 0.07 1.72 4.64 -2.39 -0.01 1.71 16 26 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.06 1.27 8.14 -2.38 -0.02 1.25 16 28 H 0.08 1.41 8.14 -2.38 -0.02 1.39 16 29 H 0.08 1.71 4.88 -2.38 -0.01 1.70 16 30 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.05 1.06 7.49 -2.39 -0.02 1.05 16 32 H 0.06 1.00 7.36 -2.39 -0.02 0.98 16 33 H 0.41 7.17 8.48 -92.70 -0.79 6.38 16 34 H 0.16 3.14 8.06 -2.91 -0.02 3.11 16 35 H 0.13 4.34 8.06 -2.91 -0.02 4.32 16 36 H 0.00 -0.21 7.66 -2.39 -0.02 -0.23 16 37 H 0.00 -0.20 7.66 -2.39 -0.02 -0.22 16 38 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 39 H 0.11 4.79 6.29 -2.91 -0.02 4.77 16 40 H 0.15 4.22 3.14 -2.91 -0.01 4.21 16 Total: -1.00 -68.93 330.11 5.70 -63.22 By element: Atomic # 1 Polarization: 19.59 SS G_CDS: 0.26 Total: 19.85 kcal Atomic # 6 Polarization: -43.53 SS G_CDS: 5.40 Total: -38.13 kcal Atomic # 7 Polarization: -71.04 SS G_CDS: -1.03 Total: -72.07 kcal Atomic # 8 Polarization: -18.35 SS G_CDS: -0.95 Total: -19.29 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -68.93 5.70 -63.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169702118.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.733 kcal (2) G-P(sol) polarization free energy of solvation -68.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.223 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds