Wall clock time and date at job start Mon Mar 30 2020 01:01:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32566 * 1 3 3 C 1.47810 * 119.99877 * 2 1 4 4 C 1.39542 * 120.13823 * 180.02562 * 3 2 1 5 5 C 1.37971 * 119.85395 * 180.02562 * 4 3 2 6 6 C 1.38350 * 120.14410 * 0.02896 * 5 4 3 7 7 C 1.50697 * 119.85788 * 179.97438 * 6 5 4 8 8 O 1.42895 * 109.47071 * 89.99689 * 7 6 5 9 9 C 1.42904 * 114.00030 * 180.02562 * 8 7 6 10 10 C 1.53513 * 114.16833 * 210.00050 * 9 8 7 11 11 N 1.47484 * 87.93060 * 220.32420 * 10 9 8 12 12 C 1.46895 * 110.99756 * 138.70311 * 11 10 9 13 13 C 1.50706 * 109.47182 * 170.00145 * 12 11 10 14 14 H 1.08000 * 119.99302 * 0.02562 * 13 12 11 15 15 C 1.37871 * 120.00436 * 179.72677 * 13 12 11 16 16 N 1.31515 * 119.99684 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00405 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.46683 * 359.97438 * 17 15 13 19 19 H 1.48492 * 109.47426 * 119.99743 * 17 15 13 20 20 H 1.48501 * 109.46833 * 239.99986 * 17 15 13 21 21 C 1.47477 * 87.83167 * 27.01125 * 11 10 9 22 22 C 1.38343 * 120.28172 * 0.24222 * 6 5 4 23 23 C 1.37974 * 120.14533 * 359.45684 * 22 6 5 24 24 H 1.07999 * 120.00067 * 359.97438 * 1 2 3 25 25 H 1.08002 * 119.99922 * 180.02562 * 1 2 3 26 26 H 1.07998 * 119.99543 * 180.02562 * 2 1 3 27 27 H 1.07998 * 120.07086 * 0.02562 * 4 3 2 28 28 H 1.08002 * 119.92947 * 179.97438 * 5 4 3 29 29 H 1.09001 * 109.47036 * 329.99898 * 7 6 5 30 30 H 1.08997 * 109.46955 * 209.99656 * 7 6 5 31 31 H 1.09003 * 113.37734 * 343.07418 * 9 8 7 32 32 H 1.09005 * 113.47855 * 105.56295 * 10 9 8 33 33 H 1.08997 * 113.47719 * 335.09320 * 10 9 8 34 34 H 1.09001 * 109.47613 * 50.00491 * 12 11 10 35 35 H 1.08998 * 109.47678 * 290.00386 * 12 11 10 36 36 H 0.97004 * 120.00247 * 180.02562 * 16 15 13 37 37 H 1.09000 * 113.48071 * 87.76093 * 21 11 10 38 38 H 1.09004 * 113.47566 * 218.21901 * 21 11 10 39 39 H 1.08002 * 119.92622 * 179.72439 * 22 6 5 40 40 H 1.08000 * 120.07581 * 180.24407 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3257 0.0000 0.0000 3 6 2.0647 1.2801 0.0000 4 6 3.4601 1.2835 -0.0005 5 6 4.1440 2.4818 0.0000 6 6 3.4493 3.6782 0.0017 7 6 4.2028 4.9833 0.0028 8 8 4.4404 5.3973 -1.3440 9 6 5.1532 6.6308 -1.4558 10 6 4.8118 7.4423 -2.7134 11 7 6.2461 7.7654 -2.8293 12 6 6.6899 7.6964 -4.2279 13 6 8.0810 8.2648 -4.3422 14 1 8.5850 8.6394 -3.4635 15 6 8.7125 8.3010 -5.5672 16 7 8.1010 7.8391 -6.6360 17 14 10.4370 9.0049 -5.7088 18 1 10.8995 9.4541 -4.3711 19 1 11.3570 7.9605 -6.2261 20 1 10.4250 10.1603 -6.6416 21 6 6.5303 6.5030 -2.1218 22 6 2.0659 3.6816 0.0079 23 6 1.3700 2.4902 0.0011 24 1 -0.5400 0.9353 0.0004 25 1 -0.5400 -0.9353 0.0004 26 1 1.8656 -0.9353 -0.0004 27 1 4.0035 0.3502 -0.0014 28 1 5.2240 2.4858 0.0000 29 1 5.1554 4.8523 0.5161 30 1 3.6139 5.7423 0.5177 31 1 5.1550 7.2142 -0.5350 32 1 4.1857 8.3117 -2.5126 33 1 4.4363 6.8324 -3.5350 34 1 6.0092 8.2733 -4.8540 35 1 6.6938 6.6574 -4.5571 36 1 8.5454 7.8642 -7.4979 37 1 6.6135 5.6424 -2.7855 38 1 7.3608 6.5762 -1.4195 39 1 1.5294 4.6189 0.0137 40 1 0.2900 2.4942 0.0020 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001223152217.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:52 Heat of formation + Delta-G solvation = 36.903958 kcal Electronic energy + Delta-G solvation = -19511.514523 eV Core-core repulsion = 16485.952508 eV Total energy + Delta-G solvation = -3025.562014 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.80240 -39.30377 -36.68813 -34.48549 -32.82350 -31.23918 -30.54251 -28.99636 -26.12638 -25.37152 -24.80946 -23.12651 -22.09385 -21.53706 -19.92706 -19.40358 -17.08721 -16.82167 -16.17881 -16.00857 -15.47511 -15.02544 -14.72851 -14.40458 -14.21917 -13.72747 -13.60062 -13.36646 -13.06209 -12.94904 -12.33383 -12.15565 -12.00646 -11.69507 -11.30234 -11.22595 -11.04903 -11.00328 -10.82540 -10.55570 -10.47844 -10.18257 -9.74335 -9.20118 -9.13789 -9.08856 -8.43069 -8.38975 -7.90616 -6.02196 -4.03518 0.65606 1.26537 2.24018 3.31857 3.38772 3.44453 3.55973 4.07449 4.44315 4.47608 4.53748 4.78848 4.79098 4.86178 4.94222 5.01211 5.16913 5.21627 5.26864 5.33073 5.36313 5.44385 5.55040 5.75986 5.87657 5.90406 6.03776 6.09136 6.10509 6.19445 6.32362 6.33618 6.41747 6.46334 6.53812 6.61072 6.80008 7.21438 7.43991 7.66269 7.87044 8.11266 8.46093 9.04082 9.60416 11.09003 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.034696 B = 0.002718 C = 0.002664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.804321 B =10298.194526 C =10507.691830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.115 4.115 3 C -0.062 4.062 4 C -0.111 4.111 5 C -0.097 4.097 6 C -0.084 4.084 7 C 0.100 3.900 8 O -0.368 6.368 9 C 0.050 3.950 10 C -0.003 4.003 11 N -0.464 5.464 12 C 0.161 3.839 13 C -0.504 4.504 14 H 0.064 0.936 15 C 0.053 3.947 16 N -0.900 5.900 17 Si 0.900 3.100 18 H -0.272 1.272 19 H -0.285 1.285 20 H -0.284 1.284 21 C -0.005 4.005 22 C -0.097 4.097 23 C -0.118 4.118 24 H 0.102 0.898 25 H 0.104 0.896 26 H 0.118 0.882 27 H 0.125 0.875 28 H 0.126 0.874 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.094 0.906 32 H 0.078 0.922 33 H 0.069 0.931 34 H 0.029 0.971 35 H 0.005 0.995 36 H 0.261 0.739 37 H 0.071 0.929 38 H 0.075 0.925 39 H 0.125 0.875 40 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.773 -13.288 16.064 24.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.133 4.133 3 C -0.062 4.062 4 C -0.129 4.129 5 C -0.115 4.115 6 C -0.084 4.084 7 C 0.023 3.977 8 O -0.286 6.286 9 C -0.008 4.008 10 C -0.132 4.132 11 N -0.189 5.189 12 C 0.035 3.965 13 C -0.543 4.543 14 H 0.082 0.918 15 C -0.148 4.148 16 N -0.539 5.539 17 Si 0.728 3.272 18 H -0.196 1.196 19 H -0.211 1.211 20 H -0.210 1.210 21 C -0.134 4.134 22 C -0.115 4.115 23 C -0.135 4.135 24 H 0.120 0.880 25 H 0.122 0.878 26 H 0.136 0.864 27 H 0.143 0.857 28 H 0.144 0.856 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.112 0.888 32 H 0.096 0.904 33 H 0.087 0.913 34 H 0.048 0.952 35 H 0.023 0.977 36 H 0.070 0.930 37 H 0.089 0.911 38 H 0.094 0.906 39 H 0.143 0.857 40 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -13.525 -12.764 15.923 24.482 hybrid contribution 0.774 -0.299 -0.578 1.011 sum -12.751 -13.063 15.345 23.847 Atomic orbital electron populations 1.24365 0.95715 1.02258 0.99578 1.21825 0.95241 0.95791 1.00478 1.19139 0.93415 0.93121 1.00481 1.21248 0.93253 0.98120 1.00311 1.21050 1.00208 0.91695 0.98528 1.19760 0.93707 0.94350 1.00544 1.21342 0.98174 0.92771 0.85365 1.88050 1.76282 1.39642 1.24659 1.24043 0.93279 0.84978 0.98471 1.24048 0.94999 0.97891 0.96256 1.68953 1.03139 1.28995 1.17768 1.20268 0.96907 0.96449 0.82910 1.21137 0.99343 1.39718 0.94057 0.91795 1.25020 0.98370 0.95708 0.95732 1.69973 1.37827 1.46897 0.99246 0.86409 0.84061 0.78663 0.78115 1.19635 1.21074 1.20987 1.24241 0.96322 0.94370 0.98480 1.21001 0.93532 0.98163 0.98838 1.21257 0.99794 0.91724 1.00771 0.88025 0.87803 0.86437 0.85737 0.85577 0.92387 0.92520 0.88770 0.90362 0.91288 0.95248 0.97672 0.92953 0.91072 0.90625 0.85718 0.85726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.26 14.15 28.83 0.41 -0.86 16 2 C -0.12 -0.94 9.91 -37.58 -0.37 -1.32 16 3 C -0.06 -0.62 5.87 -105.01 -0.62 -1.24 16 4 C -0.11 -1.14 9.79 -39.19 -0.38 -1.52 16 5 C -0.10 -1.08 9.68 -39.64 -0.38 -1.47 16 6 C -0.08 -0.99 5.51 -104.54 -0.58 -1.57 16 7 C 0.10 1.20 5.90 36.00 0.21 1.42 16 8 O -0.37 -5.79 10.37 -35.23 -0.37 -6.16 16 9 C 0.05 0.82 4.65 -26.21 -0.12 0.70 16 10 C 0.00 -0.05 7.52 -7.55 -0.06 -0.11 16 11 N -0.46 -10.47 6.32 -246.14 -1.55 -12.02 16 12 C 0.16 4.34 4.57 -4.98 -0.02 4.32 16 13 C -0.50 -14.69 9.39 -34.44 -0.32 -15.02 16 14 H 0.06 1.86 7.81 -52.49 -0.41 1.45 16 15 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 16 N -0.90 -27.33 13.29 55.43 0.74 -26.59 16 17 Si 0.90 22.08 29.54 -169.99 -5.02 17.06 16 18 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 19 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 20 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 21 C 0.00 -0.09 7.55 -7.56 -0.06 -0.15 16 22 C -0.10 -1.06 9.68 -39.64 -0.38 -1.44 16 23 C -0.12 -1.18 9.40 -39.20 -0.37 -1.55 16 24 H 0.10 0.65 6.04 -52.49 -0.32 0.34 16 25 H 0.10 0.55 8.06 -52.49 -0.42 0.12 16 26 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 27 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 28 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 29 H 0.06 0.63 8.08 -51.93 -0.42 0.21 16 30 H 0.06 0.59 8.08 -51.93 -0.42 0.17 16 31 H 0.09 1.33 7.88 -51.93 -0.41 0.92 16 32 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 33 H 0.07 1.36 7.91 -51.93 -0.41 0.95 16 34 H 0.03 0.84 8.08 -51.93 -0.42 0.42 16 35 H 0.01 0.15 7.30 -51.93 -0.38 -0.22 16 36 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 37 H 0.07 1.49 7.42 -51.93 -0.39 1.10 16 38 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 39 H 0.12 1.17 8.06 -52.49 -0.42 0.74 16 40 H 0.12 0.99 6.17 -52.49 -0.32 0.67 16 LS Contribution 339.53 15.07 5.12 5.12 Total: -1.00 -32.19 339.53 -10.22 -42.42 By element: Atomic # 1 Polarization: 4.52 SS G_CDS: -5.99 Total: -1.47 kcal Atomic # 6 Polarization: -15.21 SS G_CDS: -3.14 Total: -18.36 kcal Atomic # 7 Polarization: -37.79 SS G_CDS: -0.82 Total: -38.61 kcal Atomic # 8 Polarization: -5.79 SS G_CDS: -0.37 Total: -6.16 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.19 -10.22 -42.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223152217.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.319 kcal (2) G-P(sol) polarization free energy of solvation -32.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.415 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds