Wall clock time and date at job start Mon Mar 30 2020 01:01:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32566 * 1 3 3 C 1.47810 * 119.99877 * 2 1 4 4 C 1.39542 * 120.13823 * 180.02562 * 3 2 1 5 5 C 1.37971 * 119.85395 * 180.02562 * 4 3 2 6 6 C 1.38350 * 120.14410 * 0.02896 * 5 4 3 7 7 C 1.50697 * 119.85788 * 179.97438 * 6 5 4 8 8 O 1.42895 * 109.47071 * 89.99689 * 7 6 5 9 9 C 1.42904 * 114.00030 * 180.02562 * 8 7 6 10 10 C 1.53513 * 114.16833 * 210.00050 * 9 8 7 11 11 N 1.47484 * 87.93060 * 220.32420 * 10 9 8 12 12 C 1.46895 * 110.99756 * 138.70311 * 11 10 9 13 13 C 1.50706 * 109.47182 * 170.00145 * 12 11 10 14 14 H 1.08000 * 119.99302 * 0.02562 * 13 12 11 15 15 C 1.37871 * 120.00436 * 179.72677 * 13 12 11 16 16 N 1.31515 * 119.99684 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00405 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.46683 * 359.97438 * 17 15 13 19 19 H 1.48492 * 109.47426 * 119.99743 * 17 15 13 20 20 H 1.48501 * 109.46833 * 239.99986 * 17 15 13 21 21 C 1.47477 * 87.83167 * 27.01125 * 11 10 9 22 22 C 1.38343 * 120.28172 * 0.24222 * 6 5 4 23 23 C 1.37974 * 120.14533 * 359.45684 * 22 6 5 24 24 H 1.07999 * 120.00067 * 359.97438 * 1 2 3 25 25 H 1.08002 * 119.99922 * 180.02562 * 1 2 3 26 26 H 1.07998 * 119.99543 * 180.02562 * 2 1 3 27 27 H 1.07998 * 120.07086 * 0.02562 * 4 3 2 28 28 H 1.08002 * 119.92947 * 179.97438 * 5 4 3 29 29 H 1.09001 * 109.47036 * 329.99898 * 7 6 5 30 30 H 1.08997 * 109.46955 * 209.99656 * 7 6 5 31 31 H 1.09003 * 113.37734 * 343.07418 * 9 8 7 32 32 H 1.09005 * 113.47855 * 105.56295 * 10 9 8 33 33 H 1.08997 * 113.47719 * 335.09320 * 10 9 8 34 34 H 1.09001 * 109.47613 * 50.00491 * 12 11 10 35 35 H 1.08998 * 109.47678 * 290.00386 * 12 11 10 36 36 H 0.97004 * 120.00247 * 180.02562 * 16 15 13 37 37 H 1.09000 * 113.48071 * 87.76093 * 21 11 10 38 38 H 1.09004 * 113.47566 * 218.21901 * 21 11 10 39 39 H 1.08002 * 119.92622 * 179.72439 * 22 6 5 40 40 H 1.08000 * 120.07581 * 180.24407 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3257 0.0000 0.0000 3 6 2.0647 1.2801 0.0000 4 6 3.4601 1.2835 -0.0005 5 6 4.1440 2.4818 0.0000 6 6 3.4493 3.6782 0.0017 7 6 4.2028 4.9833 0.0028 8 8 4.4404 5.3973 -1.3440 9 6 5.1532 6.6308 -1.4558 10 6 4.8118 7.4423 -2.7134 11 7 6.2461 7.7654 -2.8293 12 6 6.6899 7.6964 -4.2279 13 6 8.0810 8.2648 -4.3422 14 1 8.5850 8.6394 -3.4635 15 6 8.7125 8.3010 -5.5672 16 7 8.1010 7.8391 -6.6360 17 14 10.4370 9.0049 -5.7088 18 1 10.8995 9.4541 -4.3711 19 1 11.3570 7.9605 -6.2261 20 1 10.4250 10.1603 -6.6416 21 6 6.5303 6.5030 -2.1218 22 6 2.0659 3.6816 0.0079 23 6 1.3700 2.4902 0.0011 24 1 -0.5400 0.9353 0.0004 25 1 -0.5400 -0.9353 0.0004 26 1 1.8656 -0.9353 -0.0004 27 1 4.0035 0.3502 -0.0014 28 1 5.2240 2.4858 0.0000 29 1 5.1554 4.8523 0.5161 30 1 3.6139 5.7423 0.5177 31 1 5.1550 7.2142 -0.5350 32 1 4.1857 8.3117 -2.5126 33 1 4.4363 6.8324 -3.5350 34 1 6.0092 8.2733 -4.8540 35 1 6.6938 6.6574 -4.5571 36 1 8.5454 7.8642 -7.4979 37 1 6.6135 5.6424 -2.7855 38 1 7.3608 6.5762 -1.4195 39 1 1.5294 4.6189 0.0137 40 1 0.2900 2.4942 0.0020 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001223152217.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:51 Heat of formation + Delta-G solvation = 16.328738 kcal Electronic energy + Delta-G solvation = -19512.406731 eV Core-core repulsion = 16485.952508 eV Total energy + Delta-G solvation = -3026.454223 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.11415 -40.30873 -37.91336 -35.31123 -34.92597 -32.02934 -31.54729 -30.70330 -27.36648 -26.92239 -26.41326 -23.89294 -23.45839 -22.84949 -20.97509 -20.55917 -18.68262 -18.06415 -17.65108 -17.04675 -16.67229 -16.33725 -16.11817 -15.79524 -15.33558 -14.92037 -14.76265 -14.30831 -14.21827 -14.02442 -13.76939 -13.72946 -13.50789 -13.03654 -12.84447 -12.55449 -12.43362 -12.22974 -12.07165 -11.92682 -11.70859 -11.63698 -11.26669 -11.16857 -10.65310 -10.41526 -9.88595 -9.77213 -9.10693 -8.25331 -6.36571 -0.08429 0.48063 1.38949 1.39896 1.54255 1.57110 2.37488 2.60961 3.06477 3.10038 3.39481 3.47448 3.77074 3.83497 3.92541 4.06418 4.08594 4.21825 4.35583 4.45078 4.45534 4.50792 4.54801 4.64630 4.66772 4.71305 4.85755 4.90422 4.92524 5.04109 5.04908 5.13050 5.34027 5.42175 5.53421 5.64561 5.68321 5.72454 5.88480 6.03106 6.04691 6.27246 6.37717 6.77879 7.33217 8.86529 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.034696 B = 0.002718 C = 0.002664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.804321 B =10298.194526 C =10507.691830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.138 4.138 3 C -0.067 4.067 4 C -0.123 4.123 5 C -0.110 4.110 6 C -0.107 4.107 7 C 0.096 3.904 8 O -0.386 6.386 9 C 0.084 3.916 10 C -0.008 4.008 11 N -0.478 5.478 12 C 0.176 3.824 13 C -0.527 4.527 14 H 0.062 0.938 15 C -0.002 4.002 16 N -0.936 5.936 17 Si 0.976 3.024 18 H -0.263 1.263 19 H -0.276 1.276 20 H -0.275 1.275 21 C -0.012 4.012 22 C -0.105 4.105 23 C -0.128 4.128 24 H 0.106 0.894 25 H 0.123 0.877 26 H 0.130 0.870 27 H 0.141 0.859 28 H 0.130 0.870 29 H 0.069 0.931 30 H 0.078 0.922 31 H 0.128 0.872 32 H 0.100 0.900 33 H 0.052 0.948 34 H 0.002 0.998 35 H -0.024 1.024 36 H 0.266 0.734 37 H 0.049 0.951 38 H 0.088 0.912 39 H 0.137 0.863 40 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.088 -13.527 17.651 26.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.156 4.156 3 C -0.067 4.067 4 C -0.141 4.141 5 C -0.128 4.128 6 C -0.107 4.107 7 C 0.021 3.979 8 O -0.305 6.305 9 C 0.026 3.974 10 C -0.137 4.137 11 N -0.202 5.202 12 C 0.049 3.951 13 C -0.565 4.565 14 H 0.080 0.920 15 C -0.200 4.200 16 N -0.576 5.576 17 Si 0.800 3.200 18 H -0.187 1.187 19 H -0.202 1.202 20 H -0.201 1.201 21 C -0.142 4.142 22 C -0.123 4.123 23 C -0.146 4.146 24 H 0.124 0.876 25 H 0.141 0.859 26 H 0.148 0.852 27 H 0.159 0.841 28 H 0.148 0.852 29 H 0.087 0.913 30 H 0.096 0.904 31 H 0.146 0.854 32 H 0.118 0.882 33 H 0.070 0.930 34 H 0.020 0.980 35 H -0.006 1.006 36 H 0.075 0.925 37 H 0.067 0.933 38 H 0.106 0.894 39 H 0.155 0.845 40 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -13.857 -13.012 17.532 25.860 hybrid contribution 0.731 -0.342 -1.038 1.314 sum -13.126 -13.354 16.495 24.954 Atomic orbital electron populations 1.24634 0.95390 1.03428 0.97050 1.21946 0.95836 0.95457 1.02319 1.19481 0.93655 0.94148 0.99427 1.21510 0.93721 0.98555 1.00315 1.21244 1.00644 0.92131 0.98829 1.19876 0.94302 0.94402 1.02126 1.21569 0.99261 0.93516 0.83593 1.88029 1.75836 1.39174 1.27448 1.23723 0.90207 0.85190 0.98315 1.24116 0.93059 0.99207 0.97358 1.68845 1.05819 1.30857 1.14693 1.19917 0.95934 0.93872 0.85354 1.21450 1.00401 1.40265 0.94359 0.91993 1.26015 1.03063 0.95753 0.95165 1.70099 1.39880 1.47710 0.99923 0.85239 0.78229 0.78051 0.78523 1.18657 1.20177 1.20091 1.24289 0.99328 0.92218 0.98321 1.21230 0.93400 0.99108 0.98605 1.21543 1.00891 0.91535 1.00608 0.87635 0.85883 0.85224 0.84092 0.85202 0.91281 0.90393 0.85432 0.88174 0.92983 0.98027 1.00627 0.92526 0.93306 0.89410 0.84520 0.83848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.94 14.15 66.67 0.94 -0.99 16 2 C -0.14 -2.02 9.91 23.65 0.23 -1.78 16 3 C -0.07 -1.29 5.87 -20.12 -0.12 -1.40 16 4 C -0.12 -2.44 9.79 22.52 0.22 -2.22 16 5 C -0.11 -2.44 9.68 22.23 0.22 -2.22 16 6 C -0.11 -2.45 5.51 -19.81 -0.11 -2.56 16 7 C 0.10 2.16 5.90 71.24 0.42 2.58 16 8 O -0.39 -11.75 10.37 -148.98 -1.55 -13.30 16 9 C 0.08 2.61 4.65 30.94 0.14 2.76 16 10 C -0.01 -0.31 7.52 83.57 0.63 0.32 16 11 N -0.48 -21.86 6.32 -933.04 -5.89 -27.76 16 12 C 0.18 9.93 4.57 85.56 0.39 10.33 16 13 C -0.53 -31.34 9.39 25.60 0.24 -31.10 16 14 H 0.06 3.63 7.81 -2.91 -0.02 3.60 16 15 C 0.00 -0.12 5.46 84.65 0.46 0.34 16 16 N -0.94 -58.03 13.29 21.45 0.28 -57.74 16 17 Si 0.98 45.39 29.54 68.60 2.03 47.42 16 18 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 19 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 20 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 21 C -0.01 -0.48 7.55 83.57 0.63 0.16 16 22 C -0.11 -2.18 9.68 22.23 0.22 -1.96 16 23 C -0.13 -2.42 9.40 22.52 0.21 -2.21 16 24 H 0.11 1.10 6.04 -2.91 -0.02 1.09 16 25 H 0.12 0.93 8.06 -2.91 -0.02 0.91 16 26 H 0.13 1.51 8.06 -2.91 -0.02 1.48 16 27 H 0.14 2.16 8.06 -2.91 -0.02 2.14 16 28 H 0.13 2.61 8.06 -2.91 -0.02 2.59 16 29 H 0.07 1.38 8.08 -2.39 -0.02 1.36 16 30 H 0.08 1.41 8.08 -2.39 -0.02 1.39 16 31 H 0.13 3.17 7.88 -2.39 -0.02 3.15 16 32 H 0.10 3.28 8.14 -2.38 -0.02 3.26 16 33 H 0.05 2.12 7.91 -2.39 -0.02 2.10 16 34 H 0.00 0.10 8.08 -2.39 -0.02 0.08 16 35 H -0.02 -1.46 7.30 -2.39 -0.02 -1.48 16 36 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 37 H 0.05 2.13 7.42 -2.39 -0.02 2.11 16 38 H 0.09 3.18 8.14 -2.38 -0.02 3.16 16 39 H 0.14 2.35 8.06 -2.91 -0.02 2.33 16 40 H 0.14 2.02 6.17 -2.91 -0.02 2.00 16 Total: -1.00 -70.52 339.53 0.61 -69.92 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: 1.01 Total: 11.44 kcal Atomic # 6 Polarization: -34.71 SS G_CDS: 4.73 Total: -29.98 kcal Atomic # 7 Polarization: -79.89 SS G_CDS: -5.61 Total: -85.50 kcal Atomic # 8 Polarization: -11.75 SS G_CDS: -1.55 Total: -13.30 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal Total: -70.52 0.61 -69.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223152217.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.245 kcal (2) G-P(sol) polarization free energy of solvation -70.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.916 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds