Wall clock time and date at job start Mon Mar 30 2020 02:32:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50698 * 119.99853 * 2 1 4 4 H 1.09004 * 109.47321 * 120.00083 * 3 2 1 5 5 O 1.42897 * 109.47379 * 359.97438 * 3 2 1 6 6 C 1.42910 * 113.99789 * 89.99994 * 5 3 2 7 7 C 1.53938 * 113.73312 * 246.72998 * 6 5 3 8 8 N 1.47964 * 86.17680 * 221.92144 * 7 6 5 9 9 C 1.46908 * 110.99718 * 137.58347 * 8 7 6 10 10 C 1.50700 * 109.46895 * 70.63752 * 9 8 7 11 11 H 1.07993 * 120.00514 * 359.97438 * 10 9 8 12 12 C 1.37878 * 119.99517 * 180.02562 * 10 9 8 13 13 N 1.31514 * 119.99506 * 180.02562 * 12 10 9 14 14 Si 1.86803 * 120.00138 * 359.97438 * 12 10 9 15 15 H 1.48497 * 109.46969 * 90.00645 * 14 12 10 16 16 H 1.48500 * 109.46815 * 210.00330 * 14 12 10 17 17 H 1.48496 * 109.47247 * 330.00458 * 14 12 10 18 18 C 1.47959 * 90.76364 * 24.69014 * 8 7 6 19 19 C 1.50703 * 109.47293 * 239.99432 * 3 2 1 20 20 C 1.38235 * 120.00292 * 265.00268 * 19 3 2 21 21 C 1.38230 * 119.99899 * 179.97438 * 20 19 3 22 22 C 1.38235 * 120.00326 * 359.95697 * 21 20 19 23 23 C 1.38234 * 119.99814 * 359.97438 * 22 21 20 24 24 C 1.38234 * 119.99503 * 84.97561 * 19 3 2 25 25 H 1.08002 * 120.00081 * 179.97438 * 1 2 3 26 26 H 1.08005 * 119.99910 * 0.02562 * 1 2 3 27 27 H 1.07994 * 120.00182 * 179.97438 * 2 1 3 28 28 H 1.08993 * 112.93591 * 18.43439 * 6 5 3 29 29 H 1.09002 * 113.75492 * 336.23944 * 7 6 5 30 30 H 1.08993 * 113.75664 * 107.60168 * 7 6 5 31 31 H 1.08998 * 109.46832 * 190.64010 * 9 8 7 32 32 H 1.09000 * 109.46974 * 310.63745 * 9 8 7 33 33 H 0.97005 * 119.99539 * 179.97438 * 13 12 10 34 34 H 1.08995 * 113.75830 * 220.98802 * 18 8 7 35 35 H 1.09004 * 113.76084 * 89.62874 * 18 8 7 36 36 H 1.08001 * 119.99730 * 359.97438 * 20 19 3 37 37 H 1.08000 * 120.00376 * 179.97438 * 21 20 19 38 38 H 1.08000 * 120.00616 * 179.72578 * 22 21 20 39 39 H 1.08001 * 120.00299 * 179.97438 * 23 22 21 40 40 H 1.07997 * 120.00455 * 0.02562 * 24 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 1 2.6901 1.3629 0.8900 5 8 1.1349 2.3913 -0.0006 6 6 0.7567 2.8333 1.3047 7 6 -0.7217 2.5703 1.6438 8 7 -0.7222 3.9232 2.2429 9 6 -1.9479 4.6535 1.8928 10 6 -3.1196 4.0465 2.6207 11 1 -2.9689 3.2024 3.2774 12 6 -4.3841 4.5681 2.4475 13 7 -5.4064 4.0387 3.0831 14 14 -4.6448 6.0276 1.3110 15 1 -4.9274 5.5406 -0.0631 16 1 -5.7935 6.8338 1.7965 17 1 -3.4209 6.8684 1.2963 18 6 0.4040 4.3301 1.3739 19 6 2.9300 1.3849 -1.2304 20 6 4.2559 0.9990 -1.1683 21 6 5.0505 1.0718 -2.2970 22 6 4.5190 1.5296 -3.4882 23 6 3.1927 1.9142 -3.5507 24 6 2.3986 1.8436 -2.4213 25 1 -0.5400 -0.9353 -0.0004 26 1 -0.5400 0.9354 -0.0004 27 1 1.8500 -0.9352 0.0004 28 1 1.4507 2.5098 2.0804 29 1 -1.3634 2.4777 0.7676 30 1 -0.8703 1.7693 2.3678 31 1 -1.8428 5.6992 2.1816 32 1 -2.1149 4.5885 0.8176 33 1 -6.2960 4.4059 2.9615 34 1 1.1546 4.9352 1.8823 35 1 0.0914 4.7523 0.4187 36 1 4.6710 0.6407 -0.2378 37 1 6.0866 0.7707 -2.2484 38 1 5.1410 1.5907 -4.3690 39 1 2.7775 2.2722 -4.4811 40 1 1.3627 2.1450 -2.4699 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001223310490.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:25 Heat of formation + Delta-G solvation = 45.539953 kcal Electronic energy + Delta-G solvation = -20473.283023 eV Core-core repulsion = 17448.095494 eV Total energy + Delta-G solvation = -3025.187529 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.02682 -39.13674 -37.05421 -33.36488 -32.62587 -31.31866 -30.99134 -29.56084 -26.31278 -25.58312 -24.94688 -22.71139 -21.71794 -21.21097 -19.76953 -19.35398 -17.22595 -16.88278 -16.59929 -16.00346 -15.64192 -14.96311 -14.76895 -14.29558 -14.13672 -13.74619 -13.47185 -13.14976 -13.04504 -12.62437 -12.43757 -12.38545 -12.00652 -11.73096 -11.54026 -11.41593 -11.12780 -10.91352 -10.79666 -10.69493 -9.90429 -9.76531 -9.36469 -9.32241 -9.27375 -9.03377 -8.82760 -8.61791 -7.99669 -6.07572 -4.05805 1.18424 1.29640 2.34195 3.27319 3.34975 3.37557 3.56137 3.77084 4.40381 4.65476 4.69664 4.78035 4.84619 4.87384 5.01401 5.05729 5.17966 5.24470 5.30779 5.35813 5.42222 5.49409 5.74963 5.81188 5.93204 5.96409 6.01458 6.12703 6.25255 6.31439 6.36219 6.40455 6.48671 6.50678 6.69713 6.76569 6.81635 6.88200 7.27793 7.42766 7.73125 7.80493 8.57915 8.99990 9.53678 11.05580 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.028830 B = 0.003806 C = 0.003668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.987216 B = 7355.784737 C = 7632.639407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.194 4.194 3 C 0.158 3.842 4 H 0.076 0.924 5 O -0.362 6.362 6 C 0.053 3.947 7 C 0.009 3.991 8 N -0.466 5.466 9 C 0.132 3.868 10 C -0.512 4.512 11 H 0.079 0.921 12 C 0.069 3.931 13 N -0.899 5.899 14 Si 0.876 3.124 15 H -0.277 1.277 16 H -0.285 1.285 17 H -0.267 1.267 18 C -0.003 4.003 19 C -0.076 4.076 20 C -0.114 4.114 21 C -0.124 4.124 22 C -0.123 4.123 23 C -0.124 4.124 24 C -0.089 4.089 25 H 0.096 0.904 26 H 0.117 0.883 27 H 0.112 0.888 28 H 0.091 0.909 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.032 0.968 32 H -0.007 1.007 33 H 0.264 0.736 34 H 0.084 0.916 35 H 0.070 0.930 36 H 0.121 0.879 37 H 0.121 0.879 38 H 0.119 0.881 39 H 0.121 0.879 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.814 -6.850 -11.166 23.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.213 4.213 3 C 0.100 3.900 4 H 0.094 0.906 5 O -0.280 6.280 6 C -0.005 4.005 7 C -0.119 4.119 8 N -0.190 5.190 9 C 0.005 3.995 10 C -0.550 4.550 11 H 0.097 0.903 12 C -0.133 4.133 13 N -0.538 5.538 14 Si 0.703 3.297 15 H -0.203 1.203 16 H -0.211 1.211 17 H -0.191 1.191 18 C -0.132 4.132 19 C -0.076 4.076 20 C -0.132 4.132 21 C -0.142 4.142 22 C -0.141 4.141 23 C -0.142 4.142 24 C -0.107 4.107 25 H 0.115 0.885 26 H 0.135 0.865 27 H 0.130 0.870 28 H 0.109 0.891 29 H 0.094 0.906 30 H 0.101 0.899 31 H 0.050 0.950 32 H 0.011 0.989 33 H 0.074 0.926 34 H 0.102 0.898 35 H 0.088 0.912 36 H 0.139 0.861 37 H 0.139 0.861 38 H 0.137 0.863 39 H 0.139 0.861 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 19.566 -6.648 -10.594 23.222 hybrid contribution -0.453 0.592 -1.239 1.446 sum 19.112 -6.056 -11.833 23.280 Atomic orbital electron populations 1.24179 0.96174 1.03081 0.96784 1.23233 0.96683 0.97498 1.03862 1.19854 0.89090 0.85834 0.95217 0.90603 1.87981 1.62060 1.49524 1.28483 1.24514 0.96522 0.95536 0.83962 1.24278 0.94018 0.94895 0.98755 1.68460 1.05155 1.02625 1.42737 1.20661 0.89106 0.95337 0.94418 1.20956 0.89736 1.17034 1.27306 0.90291 1.24910 0.95931 0.96758 0.95657 1.69898 0.99623 1.41583 1.42687 0.86848 0.78142 0.83415 0.81308 1.20253 1.21064 1.19129 1.24236 0.96584 0.95003 0.97405 1.19710 0.93554 0.99529 0.94797 1.20950 0.92990 1.00436 0.98786 1.21056 0.99632 1.00557 0.92962 1.21151 0.95544 0.99569 0.97858 1.21196 0.94189 1.00287 0.98516 1.21054 1.00499 0.97336 0.91770 0.88523 0.86515 0.87045 0.89081 0.90586 0.89872 0.95034 0.98949 0.92618 0.89780 0.91194 0.86080 0.86131 0.86304 0.86103 0.85385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.14 13.58 29.02 0.39 -1.75 16 2 C -0.19 -2.31 9.48 -36.03 -0.34 -2.65 16 3 C 0.16 1.93 2.86 -29.03 -0.08 1.85 16 4 H 0.08 0.84 7.34 -51.93 -0.38 0.45 16 5 O -0.36 -5.33 7.94 -35.23 -0.28 -5.61 16 6 C 0.05 0.82 4.23 -25.80 -0.11 0.71 16 7 C 0.01 0.18 5.61 -2.76 -0.02 0.16 16 8 N -0.47 -9.91 6.25 -239.98 -1.50 -11.41 16 9 C 0.13 3.26 3.65 -4.97 -0.02 3.24 16 10 C -0.51 -14.75 9.40 -34.44 -0.32 -15.07 16 11 H 0.08 2.48 8.04 -52.49 -0.42 2.05 16 12 C 0.07 2.02 5.47 -17.82 -0.10 1.93 16 13 N -0.90 -27.71 13.96 55.43 0.77 -26.93 16 14 Si 0.88 21.69 27.47 -169.99 -4.67 17.02 16 15 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 16 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 17 H -0.27 -6.38 6.54 56.52 0.37 -6.01 16 18 C 0.00 -0.05 7.81 -2.77 -0.02 -0.08 16 19 C -0.08 -0.89 4.99 -104.62 -0.52 -1.41 16 20 C -0.11 -1.14 9.68 -39.59 -0.38 -1.52 16 21 C -0.12 -1.13 10.05 -39.59 -0.40 -1.53 16 22 C -0.12 -1.14 10.05 -39.58 -0.40 -1.54 16 23 C -0.12 -1.28 10.05 -39.58 -0.40 -1.68 16 24 C -0.09 -1.07 9.35 -39.58 -0.37 -1.44 16 25 H 0.10 1.11 8.06 -52.49 -0.42 0.69 16 26 H 0.12 1.74 4.19 -52.48 -0.22 1.52 16 27 H 0.11 1.14 8.06 -52.49 -0.42 0.71 16 28 H 0.09 1.27 7.46 -51.93 -0.39 0.88 16 29 H 0.08 1.51 6.80 -51.93 -0.35 1.16 16 30 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 31 H 0.03 0.79 7.20 -51.93 -0.37 0.42 16 32 H -0.01 -0.18 7.12 -51.93 -0.37 -0.55 16 33 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 34 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 35 H 0.07 1.23 7.79 -51.93 -0.40 0.82 16 36 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 37 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 38 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 39 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 40 H 0.13 1.63 7.63 -52.49 -0.40 1.23 16 LS Contribution 329.14 15.07 4.96 4.96 Total: -1.00 -31.36 329.14 -9.66 -41.02 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -5.86 Total: 1.71 kcal Atomic # 6 Polarization: -17.68 SS G_CDS: -3.08 Total: -20.77 kcal Atomic # 7 Polarization: -37.61 SS G_CDS: -0.73 Total: -38.34 kcal Atomic # 8 Polarization: -5.33 SS G_CDS: -0.28 Total: -5.61 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.67 Total: 17.02 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -31.36 -9.66 -41.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223310490.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.564 kcal (2) G-P(sol) polarization free energy of solvation -31.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.024 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds