Wall clock time and date at job start Mon Mar 30 2020 02:32:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50698 * 119.99853 * 2 1 4 4 H 1.09004 * 109.47321 * 120.00083 * 3 2 1 5 5 O 1.42897 * 109.47379 * 359.97438 * 3 2 1 6 6 C 1.42910 * 113.99789 * 89.99994 * 5 3 2 7 7 C 1.53938 * 113.73312 * 246.72998 * 6 5 3 8 8 N 1.47964 * 86.17680 * 221.92144 * 7 6 5 9 9 C 1.46908 * 110.99718 * 137.58347 * 8 7 6 10 10 C 1.50700 * 109.46895 * 70.63752 * 9 8 7 11 11 H 1.07993 * 120.00514 * 359.97438 * 10 9 8 12 12 C 1.37878 * 119.99517 * 180.02562 * 10 9 8 13 13 N 1.31514 * 119.99506 * 180.02562 * 12 10 9 14 14 Si 1.86803 * 120.00138 * 359.97438 * 12 10 9 15 15 H 1.48497 * 109.46969 * 90.00645 * 14 12 10 16 16 H 1.48500 * 109.46815 * 210.00330 * 14 12 10 17 17 H 1.48496 * 109.47247 * 330.00458 * 14 12 10 18 18 C 1.47959 * 90.76364 * 24.69014 * 8 7 6 19 19 C 1.50703 * 109.47293 * 239.99432 * 3 2 1 20 20 C 1.38235 * 120.00292 * 265.00268 * 19 3 2 21 21 C 1.38230 * 119.99899 * 179.97438 * 20 19 3 22 22 C 1.38235 * 120.00326 * 359.95697 * 21 20 19 23 23 C 1.38234 * 119.99814 * 359.97438 * 22 21 20 24 24 C 1.38234 * 119.99503 * 84.97561 * 19 3 2 25 25 H 1.08002 * 120.00081 * 179.97438 * 1 2 3 26 26 H 1.08005 * 119.99910 * 0.02562 * 1 2 3 27 27 H 1.07994 * 120.00182 * 179.97438 * 2 1 3 28 28 H 1.08993 * 112.93591 * 18.43439 * 6 5 3 29 29 H 1.09002 * 113.75492 * 336.23944 * 7 6 5 30 30 H 1.08993 * 113.75664 * 107.60168 * 7 6 5 31 31 H 1.08998 * 109.46832 * 190.64010 * 9 8 7 32 32 H 1.09000 * 109.46974 * 310.63745 * 9 8 7 33 33 H 0.97005 * 119.99539 * 179.97438 * 13 12 10 34 34 H 1.08995 * 113.75830 * 220.98802 * 18 8 7 35 35 H 1.09004 * 113.76084 * 89.62874 * 18 8 7 36 36 H 1.08001 * 119.99730 * 359.97438 * 20 19 3 37 37 H 1.08000 * 120.00376 * 179.97438 * 21 20 19 38 38 H 1.08000 * 120.00616 * 179.72578 * 22 21 20 39 39 H 1.08001 * 120.00299 * 179.97438 * 23 22 21 40 40 H 1.07997 * 120.00455 * 0.02562 * 24 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 1 2.6901 1.3629 0.8900 5 8 1.1349 2.3913 -0.0006 6 6 0.7567 2.8333 1.3047 7 6 -0.7217 2.5703 1.6438 8 7 -0.7222 3.9232 2.2429 9 6 -1.9479 4.6535 1.8928 10 6 -3.1196 4.0465 2.6207 11 1 -2.9689 3.2024 3.2774 12 6 -4.3841 4.5681 2.4475 13 7 -5.4064 4.0387 3.0831 14 14 -4.6448 6.0276 1.3110 15 1 -4.9274 5.5406 -0.0631 16 1 -5.7935 6.8338 1.7965 17 1 -3.4209 6.8684 1.2963 18 6 0.4040 4.3301 1.3739 19 6 2.9300 1.3849 -1.2304 20 6 4.2559 0.9990 -1.1683 21 6 5.0505 1.0718 -2.2970 22 6 4.5190 1.5296 -3.4882 23 6 3.1927 1.9142 -3.5507 24 6 2.3986 1.8436 -2.4213 25 1 -0.5400 -0.9353 -0.0004 26 1 -0.5400 0.9354 -0.0004 27 1 1.8500 -0.9352 0.0004 28 1 1.4507 2.5098 2.0804 29 1 -1.3634 2.4777 0.7676 30 1 -0.8703 1.7693 2.3678 31 1 -1.8428 5.6992 2.1816 32 1 -2.1149 4.5885 0.8176 33 1 -6.2960 4.4059 2.9615 34 1 1.1546 4.9352 1.8823 35 1 0.0914 4.7523 0.4187 36 1 4.6710 0.6407 -0.2378 37 1 6.0866 0.7707 -2.2484 38 1 5.1410 1.5907 -4.3690 39 1 2.7775 2.2722 -4.4811 40 1 1.3627 2.1450 -2.4699 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001223310490.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:24 Heat of formation + Delta-G solvation = 25.189225 kcal Electronic energy + Delta-G solvation = -20474.165497 eV Core-core repulsion = 17448.095494 eV Total energy + Delta-G solvation = -3026.070003 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 2.52 seconds Orbital eigenvalues (eV) -41.23597 -40.16484 -38.20559 -35.03331 -34.20033 -32.19970 -31.76576 -31.37296 -27.62245 -26.94458 -26.50496 -23.59374 -22.93289 -22.53230 -21.01299 -20.55594 -19.04080 -18.10204 -17.82982 -17.08901 -16.78251 -16.29553 -16.06190 -15.80978 -15.17817 -15.02807 -14.73878 -14.23931 -14.22421 -14.08737 -13.90240 -13.60957 -13.52192 -13.07795 -12.94464 -12.67241 -12.36111 -12.28998 -11.92728 -11.84448 -11.82897 -11.47025 -11.35973 -10.84563 -10.58122 -10.30508 -9.78640 -9.69487 -9.61285 -8.33446 -6.38072 0.41649 0.53885 1.31480 1.33187 1.36771 1.44455 2.30551 2.51203 2.93043 2.99622 3.21480 3.51180 3.80331 4.00010 4.03004 4.04503 4.22437 4.25707 4.31384 4.34536 4.44235 4.52569 4.64317 4.64734 4.71196 4.76404 4.79518 4.84343 4.97744 5.05667 5.10551 5.19633 5.36264 5.57860 5.65361 5.66535 5.67419 5.71102 5.79335 5.95374 6.13739 6.33533 6.46022 6.67198 7.25860 8.83265 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.028830 B = 0.003806 C = 0.003668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.987216 B = 7355.784737 C = 7632.639407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.181 4.181 3 C 0.152 3.848 4 H 0.096 0.904 5 O -0.372 6.372 6 C 0.079 3.921 7 C 0.006 3.994 8 N -0.488 5.488 9 C 0.143 3.857 10 C -0.522 4.522 11 H 0.035 0.965 12 C 0.010 3.990 13 N -0.945 5.945 14 Si 0.948 3.052 15 H -0.267 1.267 16 H -0.277 1.277 17 H -0.250 1.250 18 C -0.001 4.001 19 C -0.091 4.091 20 C -0.116 4.116 21 C -0.124 4.124 22 C -0.124 4.124 23 C -0.133 4.133 24 C -0.112 4.112 25 H 0.106 0.894 26 H 0.093 0.907 27 H 0.134 0.866 28 H 0.115 0.885 29 H 0.057 0.943 30 H 0.075 0.925 31 H 0.031 0.969 32 H -0.006 1.006 33 H 0.268 0.732 34 H 0.109 0.891 35 H 0.067 0.933 36 H 0.143 0.857 37 H 0.149 0.851 38 H 0.144 0.856 39 H 0.133 0.867 40 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.820 -6.404 -12.594 26.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.199 4.199 3 C 0.095 3.905 4 H 0.113 0.887 5 O -0.290 6.290 6 C 0.021 3.979 7 C -0.123 4.123 8 N -0.212 5.212 9 C 0.015 3.985 10 C -0.560 4.560 11 H 0.054 0.946 12 C -0.188 4.188 13 N -0.586 5.586 14 Si 0.771 3.229 15 H -0.192 1.192 16 H -0.203 1.203 17 H -0.173 1.173 18 C -0.130 4.130 19 C -0.091 4.091 20 C -0.134 4.134 21 C -0.142 4.142 22 C -0.142 4.142 23 C -0.151 4.151 24 C -0.131 4.131 25 H 0.124 0.876 26 H 0.111 0.889 27 H 0.152 0.848 28 H 0.133 0.867 29 H 0.076 0.924 30 H 0.093 0.907 31 H 0.049 0.951 32 H 0.012 0.988 33 H 0.077 0.923 34 H 0.127 0.873 35 H 0.085 0.915 36 H 0.161 0.839 37 H 0.167 0.833 38 H 0.162 0.838 39 H 0.150 0.850 40 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 22.597 -6.211 -12.027 26.341 hybrid contribution -1.301 0.334 -0.797 1.561 sum 21.296 -5.877 -12.823 25.544 Atomic orbital electron populations 1.24116 0.96849 1.02497 0.99008 1.23441 0.96258 0.98399 1.01795 1.20096 0.88910 0.84955 0.96588 0.88667 1.87983 1.62833 1.50486 1.27690 1.24183 0.94571 0.94093 0.85075 1.24244 0.96755 0.93589 0.97726 1.68362 1.04776 1.03650 1.44421 1.20416 0.89254 0.95217 0.93611 1.21172 0.91806 1.16065 1.26972 0.94632 1.25868 0.95433 1.00093 0.97407 1.70047 1.00333 1.43580 1.44609 0.85704 0.78775 0.79442 0.79001 1.19230 1.20277 1.17348 1.24304 0.95336 0.96596 0.96761 1.19725 0.94402 1.00834 0.94171 1.21226 0.92168 0.99860 1.00166 1.21448 1.00875 0.99433 0.92420 1.21505 0.95186 0.98484 0.99051 1.21404 0.94854 1.00405 0.98473 1.21052 1.00055 0.98944 0.93014 0.87551 0.88924 0.84806 0.86733 0.92440 0.90672 0.95080 0.98830 0.92274 0.87299 0.91506 0.83946 0.83346 0.83823 0.84956 0.87358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.93 13.58 67.78 0.92 -4.01 16 2 C -0.18 -4.07 9.48 25.65 0.24 -3.83 16 3 C 0.15 3.46 2.86 29.10 0.08 3.54 16 4 H 0.10 1.81 7.34 -2.38 -0.02 1.79 16 5 O -0.37 -10.65 7.94 -148.98 -1.18 -11.84 16 6 C 0.08 2.37 4.23 31.24 0.13 2.50 16 7 C 0.01 0.23 5.61 86.41 0.49 0.71 16 8 N -0.49 -20.85 6.25 -916.36 -5.73 -26.59 16 9 C 0.14 7.11 3.65 85.56 0.31 7.42 16 10 C -0.52 -31.12 9.40 25.60 0.24 -30.88 16 11 H 0.04 2.36 8.04 -2.91 -0.02 2.33 16 12 C 0.01 0.58 5.47 84.66 0.46 1.04 16 13 N -0.95 -60.01 13.96 21.45 0.30 -59.71 16 14 Si 0.95 44.92 27.47 68.60 1.88 46.81 16 15 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 16 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 17 H -0.25 -11.08 6.54 99.48 0.65 -10.43 16 18 C 0.00 -0.04 7.81 86.40 0.67 0.63 16 19 C -0.09 -1.98 4.99 -19.87 -0.10 -2.08 16 20 C -0.12 -1.96 9.68 22.27 0.22 -1.75 16 21 C -0.12 -1.81 10.05 22.27 0.22 -1.59 16 22 C -0.12 -1.93 10.05 22.27 0.22 -1.71 16 23 C -0.13 -2.56 10.05 22.27 0.22 -2.33 16 24 C -0.11 -2.64 9.35 22.27 0.21 -2.44 16 25 H 0.11 2.49 8.06 -2.91 -0.02 2.46 16 26 H 0.09 2.91 4.19 -2.91 -0.01 2.89 16 27 H 0.13 2.41 8.06 -2.91 -0.02 2.39 16 28 H 0.12 2.91 7.46 -2.39 -0.02 2.90 16 29 H 0.06 2.42 6.80 -2.39 -0.02 2.40 16 30 H 0.07 2.95 8.14 -2.39 -0.02 2.93 16 31 H 0.03 1.54 7.20 -2.39 -0.02 1.52 16 32 H -0.01 -0.29 7.12 -2.39 -0.02 -0.31 16 33 H 0.27 15.80 8.31 -92.70 -0.77 15.03 16 34 H 0.11 3.08 8.14 -2.39 -0.02 3.06 16 35 H 0.07 2.28 7.79 -2.38 -0.02 2.26 16 36 H 0.14 1.72 8.06 -2.91 -0.02 1.70 16 37 H 0.15 1.32 8.06 -2.91 -0.02 1.29 16 38 H 0.14 1.46 8.06 -2.91 -0.02 1.44 16 39 H 0.13 2.09 8.06 -2.91 -0.02 2.06 16 40 H 0.11 2.87 7.63 -2.91 -0.02 2.85 16 Total: -1.00 -69.84 329.14 0.77 -69.06 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: 0.95 Total: 17.03 kcal Atomic # 6 Polarization: -39.32 SS G_CDS: 4.55 Total: -34.77 kcal Atomic # 7 Polarization: -80.86 SS G_CDS: -5.43 Total: -86.29 kcal Atomic # 8 Polarization: -10.65 SS G_CDS: -1.18 Total: -11.84 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 1.88 Total: 46.81 kcal Total: -69.84 0.77 -69.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223310490.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.253 kcal (2) G-P(sol) polarization free energy of solvation -69.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.064 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.53 seconds