Wall clock time and date at job start Mon Mar 30 2020 02:32:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50699 * 120.00227 * 2 1 4 4 H 1.09001 * 109.47582 * 245.00380 * 3 2 1 5 5 O 1.42905 * 109.47093 * 5.00350 * 3 2 1 6 6 C 1.42899 * 113.99778 * 269.99983 * 5 3 2 7 7 C 1.53933 * 113.73040 * 246.72494 * 6 5 3 8 8 N 1.47965 * 86.18087 * 221.92278 * 7 6 5 9 9 C 1.46894 * 111.00182 * 137.58559 * 8 7 6 10 10 C 1.50697 * 109.47463 * 70.64060 * 9 8 7 11 11 H 1.08005 * 119.99998 * 359.97438 * 10 9 8 12 12 C 1.37875 * 120.00165 * 180.02562 * 10 9 8 13 13 N 1.31515 * 120.00259 * 359.97438 * 12 10 9 14 14 Si 1.86804 * 120.00052 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.46824 * 60.00044 * 14 12 10 16 16 H 1.48500 * 109.47241 * 179.97438 * 14 12 10 17 17 H 1.48495 * 109.47298 * 300.00007 * 14 12 10 18 18 C 1.47963 * 90.76246 * 24.69118 * 8 7 6 19 19 C 1.50701 * 109.47274 * 125.00003 * 3 2 1 20 20 C 1.38242 * 119.99995 * 279.73370 * 19 3 2 21 21 C 1.38233 * 119.99746 * 179.80772 * 20 19 3 22 22 C 1.38239 * 120.00258 * 0.39521 * 21 20 19 23 23 C 1.38237 * 119.99728 * 359.85454 * 22 21 20 24 24 C 1.38235 * 120.00315 * 359.95859 * 23 22 21 25 25 H 1.08002 * 119.99816 * 0.02562 * 1 2 3 26 26 H 1.07995 * 119.99941 * 179.97438 * 1 2 3 27 27 H 1.07999 * 120.00320 * 180.02562 * 2 1 3 28 28 H 1.08995 * 112.94012 * 18.43377 * 6 5 3 29 29 H 1.09005 * 113.76464 * 336.23629 * 7 6 5 30 30 H 1.08998 * 113.75732 * 107.60655 * 7 6 5 31 31 H 1.09002 * 109.46985 * 190.64187 * 9 8 7 32 32 H 1.09004 * 109.47210 * 310.63902 * 9 8 7 33 33 H 0.97001 * 120.00088 * 179.97438 * 13 12 10 34 34 H 1.09002 * 113.75734 * 220.99893 * 18 8 7 35 35 H 1.08994 * 113.76126 * 89.62686 * 18 8 7 36 36 H 1.07993 * 119.99645 * 359.97438 * 20 19 3 37 37 H 1.08002 * 119.99835 * 180.22503 * 21 20 19 38 38 H 1.07994 * 119.99980 * 179.83531 * 22 21 20 39 39 H 1.07997 * 120.00158 * 179.97438 * 23 22 21 40 40 H 1.07992 * 120.00217 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 1 2.6213 1.4027 -0.9314 5 8 1.1394 2.3887 0.1175 6 6 0.6650 2.8864 -1.1352 7 6 1.1300 4.3200 -1.4485 8 7 -0.2474 4.5545 -1.9355 9 6 -0.7482 5.8614 -1.4895 10 6 -0.0219 6.9562 -2.2276 11 1 0.7363 6.7062 -2.9550 12 6 -0.3245 8.2772 -1.9735 13 7 -1.2473 8.5817 -1.0874 14 14 0.5764 9.6343 -2.8880 15 1 0.3433 9.4871 -4.3471 16 1 0.0700 10.9555 -2.4372 17 1 2.0314 9.5392 -2.6070 18 6 -0.7591 3.4676 -1.0717 19 6 3.0205 1.3326 1.1639 20 6 2.5605 1.6440 2.4298 21 6 3.4375 1.6653 3.4980 22 6 4.7762 1.3834 3.2990 23 6 5.2371 1.0771 2.0323 24 6 4.3594 1.0519 0.9646 25 1 -0.5400 0.9353 -0.0004 26 1 -0.5400 -0.9353 -0.0004 27 1 1.8501 -0.9353 -0.0004 28 1 0.8163 2.1851 -1.9557 29 1 1.3876 4.9015 -0.5632 30 1 1.8875 4.3749 -2.2302 31 1 -1.8163 5.9308 -1.6957 32 1 -0.5771 5.9698 -0.4185 33 1 -1.4600 9.5111 -0.9085 34 1 -1.5107 2.8415 -1.5525 35 1 -1.0538 3.7997 -0.0763 36 1 1.5154 1.8678 2.5845 37 1 3.0775 1.9050 4.4876 38 1 5.4618 1.4027 4.1331 39 1 6.2829 0.8572 1.8767 40 1 4.7195 0.8131 -0.0250 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001223310491.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:29 Heat of formation + Delta-G solvation = 39.611448 kcal Electronic energy + Delta-G solvation = -20392.542135 eV Core-core repulsion = 17367.097526 eV Total energy + Delta-G solvation = -3025.444609 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 2.84 seconds Orbital eigenvalues (eV) -39.91917 -39.02011 -37.01122 -33.34816 -32.65984 -31.30788 -30.92512 -29.00214 -26.15147 -25.60230 -24.70605 -22.66674 -21.66427 -21.48507 -19.73659 -19.30728 -17.20642 -16.66983 -16.22500 -15.98877 -15.59402 -14.95863 -14.70739 -14.31774 -14.16606 -13.64854 -13.43557 -13.19368 -12.99719 -12.60204 -12.06772 -11.99642 -11.83842 -11.77324 -11.35952 -11.31932 -11.05919 -10.96921 -10.80607 -10.62174 -10.24021 -9.65318 -9.42190 -9.24911 -9.15434 -8.96522 -8.78616 -8.47477 -7.80163 -6.03461 -4.05437 1.24616 1.36467 2.23715 3.33812 3.37424 3.40546 3.61937 3.87158 4.43085 4.70834 4.81089 4.84593 4.86506 4.94787 5.03776 5.07979 5.20064 5.32356 5.36324 5.39883 5.48249 5.56194 5.81291 5.88515 5.96172 6.00594 6.12752 6.18319 6.36044 6.42252 6.45994 6.49726 6.56318 6.56570 6.68899 6.72701 6.93860 7.24702 7.49406 7.63991 7.88964 8.12345 8.42774 9.01249 9.58837 11.07817 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.019830 B = 0.004041 C = 0.003634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.671699 B = 6927.160521 C = 7703.089704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.186 4.186 3 C 0.156 3.844 4 H 0.077 0.923 5 O -0.361 6.361 6 C 0.052 3.948 7 C 0.007 3.993 8 N -0.475 5.475 9 C 0.164 3.836 10 C -0.511 4.511 11 H 0.061 0.939 12 C 0.057 3.943 13 N -0.898 5.898 14 Si 0.899 3.101 15 H -0.276 1.276 16 H -0.287 1.287 17 H -0.277 1.277 18 C 0.001 3.999 19 C -0.076 4.076 20 C -0.087 4.087 21 C -0.124 4.124 22 C -0.122 4.122 23 C -0.124 4.124 24 C -0.112 4.112 25 H 0.111 0.889 26 H 0.096 0.904 27 H 0.112 0.888 28 H 0.089 0.911 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.033 0.967 32 H 0.000 1.000 33 H 0.262 0.738 34 H 0.081 0.919 35 H 0.070 0.930 36 H 0.127 0.873 37 H 0.121 0.879 38 H 0.119 0.881 39 H 0.121 0.879 40 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.345 -18.355 6.323 21.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.204 4.204 3 C 0.098 3.902 4 H 0.095 0.905 5 O -0.279 6.279 6 C -0.006 4.006 7 C -0.122 4.122 8 N -0.200 5.200 9 C 0.038 3.962 10 C -0.550 4.550 11 H 0.079 0.921 12 C -0.145 4.145 13 N -0.537 5.537 14 Si 0.726 3.274 15 H -0.201 1.201 16 H -0.213 1.213 17 H -0.202 1.202 18 C -0.129 4.129 19 C -0.076 4.076 20 C -0.105 4.105 21 C -0.142 4.142 22 C -0.140 4.140 23 C -0.142 4.142 24 C -0.130 4.130 25 H 0.129 0.871 26 H 0.114 0.886 27 H 0.130 0.870 28 H 0.107 0.893 29 H 0.093 0.907 30 H 0.095 0.905 31 H 0.051 0.949 32 H 0.018 0.982 33 H 0.072 0.928 34 H 0.099 0.901 35 H 0.089 0.911 36 H 0.145 0.855 37 H 0.139 0.861 38 H 0.137 0.863 39 H 0.139 0.861 40 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 9.036 -18.095 5.886 21.065 hybrid contribution 0.585 0.893 0.244 1.095 sum 9.621 -17.202 6.130 20.641 Atomic orbital electron populations 1.23953 0.96120 1.02480 0.98269 1.23336 0.96687 0.97856 1.02508 1.19826 0.88819 0.85704 0.95880 0.90498 1.88031 1.60885 1.48977 1.30018 1.24500 0.95690 0.94950 0.85474 1.24184 0.94766 0.93659 0.99618 1.68528 1.02509 1.05441 1.43530 1.20186 0.96701 0.84910 0.94427 1.21052 1.21051 0.90201 1.22687 0.92081 1.24984 0.95324 0.98811 0.95348 1.69949 1.31632 1.18571 1.33547 0.86548 0.79910 0.80749 0.80155 1.20126 1.21274 1.20242 1.24178 0.95185 0.95578 0.97910 1.19657 0.93365 1.00132 0.94479 1.21034 1.00382 0.97252 0.91829 1.21188 0.93637 1.00362 0.99023 1.21153 0.95774 0.99929 0.97134 1.21060 0.99424 1.00862 0.92882 1.20972 0.92443 1.00429 0.99162 0.87099 0.88616 0.86971 0.89292 0.90738 0.90490 0.94936 0.98182 0.92815 0.90067 0.91147 0.85505 0.86088 0.86288 0.86117 0.86075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.93 13.84 29.01 0.40 -1.52 16 2 C -0.19 -2.07 9.49 -36.03 -0.34 -2.41 16 3 C 0.16 1.96 2.74 -29.03 -0.08 1.88 16 4 H 0.08 0.91 7.58 -51.93 -0.39 0.51 16 5 O -0.36 -5.55 8.15 -35.23 -0.29 -5.83 16 6 C 0.05 0.84 3.37 -25.80 -0.09 0.75 16 7 C 0.01 0.14 7.29 -2.76 -0.02 0.12 16 8 N -0.48 -10.56 6.25 -239.96 -1.50 -12.06 16 9 C 0.16 4.39 4.58 -4.98 -0.02 4.37 16 10 C -0.51 -14.74 8.84 -34.44 -0.30 -15.04 16 11 H 0.06 1.74 7.80 -52.48 -0.41 1.33 16 12 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 13 N -0.90 -27.10 13.29 55.43 0.74 -26.36 16 14 Si 0.90 21.97 29.54 -169.99 -5.02 16.95 16 15 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 16 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 17 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 18 C 0.00 0.01 7.41 -2.76 -0.02 -0.01 16 19 C -0.08 -0.95 4.96 -104.62 -0.52 -1.47 16 20 C -0.09 -1.11 9.35 -39.58 -0.37 -1.48 16 21 C -0.12 -1.38 10.05 -39.58 -0.40 -1.77 16 22 C -0.12 -1.23 10.05 -39.58 -0.40 -1.63 16 23 C -0.12 -1.24 10.05 -39.58 -0.40 -1.64 16 24 C -0.11 -1.22 9.67 -39.58 -0.38 -1.60 16 25 H 0.11 1.41 5.89 -52.49 -0.31 1.10 16 26 H 0.10 0.89 8.06 -52.49 -0.42 0.47 16 27 H 0.11 1.07 8.06 -52.49 -0.42 0.65 16 28 H 0.09 1.30 7.77 -51.93 -0.40 0.89 16 29 H 0.07 1.62 7.78 -51.93 -0.40 1.21 16 30 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 31 H 0.03 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.00 0.01 7.69 -51.93 -0.40 -0.39 16 33 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 34 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 35 H 0.07 1.34 7.79 -51.93 -0.40 0.94 16 36 H 0.13 1.67 7.77 -52.49 -0.41 1.26 16 37 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 38 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 39 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 40 H 0.12 1.08 8.04 -52.49 -0.42 0.66 16 LS Contribution 336.83 15.07 5.08 5.08 Total: -1.00 -31.14 336.83 -10.10 -41.25 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -6.07 Total: 0.90 kcal Atomic # 6 Polarization: -16.88 SS G_CDS: -3.04 Total: -19.91 kcal Atomic # 7 Polarization: -37.66 SS G_CDS: -0.76 Total: -38.42 kcal Atomic # 8 Polarization: -5.55 SS G_CDS: -0.29 Total: -5.83 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.14 -10.10 -41.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223310491.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.858 kcal (2) G-P(sol) polarization free energy of solvation -31.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.246 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.84 seconds