Wall clock time and date at job start Mon Mar 30 2020 02:32:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50699 * 120.00227 * 2 1 4 4 H 1.09001 * 109.47582 * 245.00380 * 3 2 1 5 5 O 1.42905 * 109.47093 * 5.00350 * 3 2 1 6 6 C 1.42899 * 113.99778 * 269.99983 * 5 3 2 7 7 C 1.53933 * 113.73040 * 246.72494 * 6 5 3 8 8 N 1.47965 * 86.18087 * 221.92278 * 7 6 5 9 9 C 1.46894 * 111.00182 * 137.58559 * 8 7 6 10 10 C 1.50697 * 109.47463 * 70.64060 * 9 8 7 11 11 H 1.08005 * 119.99998 * 359.97438 * 10 9 8 12 12 C 1.37875 * 120.00165 * 180.02562 * 10 9 8 13 13 N 1.31515 * 120.00259 * 359.97438 * 12 10 9 14 14 Si 1.86804 * 120.00052 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.46824 * 60.00044 * 14 12 10 16 16 H 1.48500 * 109.47241 * 179.97438 * 14 12 10 17 17 H 1.48495 * 109.47298 * 300.00007 * 14 12 10 18 18 C 1.47963 * 90.76246 * 24.69118 * 8 7 6 19 19 C 1.50701 * 109.47274 * 125.00003 * 3 2 1 20 20 C 1.38242 * 119.99995 * 279.73370 * 19 3 2 21 21 C 1.38233 * 119.99746 * 179.80772 * 20 19 3 22 22 C 1.38239 * 120.00258 * 0.39521 * 21 20 19 23 23 C 1.38237 * 119.99728 * 359.85454 * 22 21 20 24 24 C 1.38235 * 120.00315 * 359.95859 * 23 22 21 25 25 H 1.08002 * 119.99816 * 0.02562 * 1 2 3 26 26 H 1.07995 * 119.99941 * 179.97438 * 1 2 3 27 27 H 1.07999 * 120.00320 * 180.02562 * 2 1 3 28 28 H 1.08995 * 112.94012 * 18.43377 * 6 5 3 29 29 H 1.09005 * 113.76464 * 336.23629 * 7 6 5 30 30 H 1.08998 * 113.75732 * 107.60655 * 7 6 5 31 31 H 1.09002 * 109.46985 * 190.64187 * 9 8 7 32 32 H 1.09004 * 109.47210 * 310.63902 * 9 8 7 33 33 H 0.97001 * 120.00088 * 179.97438 * 13 12 10 34 34 H 1.09002 * 113.75734 * 220.99893 * 18 8 7 35 35 H 1.08994 * 113.76126 * 89.62686 * 18 8 7 36 36 H 1.07993 * 119.99645 * 359.97438 * 20 19 3 37 37 H 1.08002 * 119.99835 * 180.22503 * 21 20 19 38 38 H 1.07994 * 119.99980 * 179.83531 * 22 21 20 39 39 H 1.07997 * 120.00158 * 179.97438 * 23 22 21 40 40 H 1.07992 * 120.00217 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 1 2.6213 1.4027 -0.9314 5 8 1.1394 2.3887 0.1175 6 6 0.6650 2.8864 -1.1352 7 6 1.1300 4.3200 -1.4485 8 7 -0.2474 4.5545 -1.9355 9 6 -0.7482 5.8614 -1.4895 10 6 -0.0219 6.9562 -2.2276 11 1 0.7363 6.7062 -2.9550 12 6 -0.3245 8.2772 -1.9735 13 7 -1.2473 8.5817 -1.0874 14 14 0.5764 9.6343 -2.8880 15 1 0.3433 9.4871 -4.3471 16 1 0.0700 10.9555 -2.4372 17 1 2.0314 9.5392 -2.6070 18 6 -0.7591 3.4676 -1.0717 19 6 3.0205 1.3326 1.1639 20 6 2.5605 1.6440 2.4298 21 6 3.4375 1.6653 3.4980 22 6 4.7762 1.3834 3.2990 23 6 5.2371 1.0771 2.0323 24 6 4.3594 1.0519 0.9646 25 1 -0.5400 0.9353 -0.0004 26 1 -0.5400 -0.9353 -0.0004 27 1 1.8501 -0.9353 -0.0004 28 1 0.8163 2.1851 -1.9557 29 1 1.3876 4.9015 -0.5632 30 1 1.8875 4.3749 -2.2302 31 1 -1.8163 5.9308 -1.6957 32 1 -0.5771 5.9698 -0.4185 33 1 -1.4600 9.5111 -0.9085 34 1 -1.5107 2.8415 -1.5525 35 1 -1.0538 3.7997 -0.0763 36 1 1.5154 1.8678 2.5845 37 1 3.0775 1.9050 4.4876 38 1 5.4618 1.4027 4.1331 39 1 6.2829 0.8572 1.8767 40 1 4.7195 0.8131 -0.0250 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001223310491.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:28 Heat of formation + Delta-G solvation = 20.304050 kcal Electronic energy + Delta-G solvation = -20393.379366 eV Core-core repulsion = 17367.097526 eV Total energy + Delta-G solvation = -3026.281840 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.17331 -40.15805 -38.22049 -35.09535 -34.13619 -32.17154 -31.75753 -30.90794 -27.40188 -27.19965 -26.35299 -23.72426 -23.16785 -22.50945 -20.85312 -20.68801 -18.64960 -18.10193 -17.71837 -17.04361 -16.86293 -16.40617 -16.08100 -15.66521 -15.29238 -15.14723 -14.49741 -14.32410 -14.19262 -13.83673 -13.69009 -13.58675 -13.32637 -13.15774 -12.75646 -12.66700 -12.56230 -12.30765 -12.17789 -11.89134 -11.87440 -11.48222 -11.21147 -10.67052 -10.54620 -10.29142 -9.79947 -9.70822 -9.60234 -8.25779 -6.37250 0.40507 0.52542 1.37367 1.38293 1.42188 1.50242 2.36700 2.54642 2.93775 3.07211 3.26940 3.50964 3.79214 3.94743 4.02787 4.07189 4.21836 4.27192 4.31388 4.34619 4.53685 4.56131 4.65452 4.69029 4.75015 4.76147 4.87917 4.94799 5.03120 5.09824 5.11470 5.18104 5.47845 5.56435 5.63654 5.65873 5.69080 5.73249 5.81302 6.06973 6.12587 6.32566 6.36287 6.76980 7.32742 8.86078 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.019830 B = 0.004041 C = 0.003634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.671699 B = 6927.160521 C = 7703.089704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.183 4.183 3 C 0.150 3.850 4 H 0.089 0.911 5 O -0.374 6.374 6 C 0.085 3.915 7 C 0.000 4.000 8 N -0.487 5.487 9 C 0.180 3.820 10 C -0.532 4.532 11 H 0.061 0.939 12 C 0.002 3.998 13 N -0.934 5.934 14 Si 0.972 3.028 15 H -0.266 1.266 16 H -0.280 1.280 17 H -0.267 1.267 18 C -0.001 4.001 19 C -0.093 4.093 20 C -0.112 4.112 21 C -0.135 4.135 22 C -0.125 4.125 23 C -0.125 4.125 24 C -0.118 4.118 25 H 0.092 0.908 26 H 0.116 0.884 27 H 0.133 0.867 28 H 0.117 0.883 29 H 0.047 0.953 30 H 0.088 0.912 31 H 0.004 0.996 32 H -0.030 1.030 33 H 0.266 0.734 34 H 0.106 0.894 35 H 0.055 0.945 36 H 0.110 0.890 37 H 0.133 0.867 38 H 0.144 0.856 39 H 0.149 0.851 40 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.515 -19.628 5.574 23.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.201 4.201 3 C 0.092 3.908 4 H 0.107 0.893 5 O -0.293 6.293 6 C 0.026 3.974 7 C -0.129 4.129 8 N -0.211 5.211 9 C 0.053 3.947 10 C -0.570 4.570 11 H 0.080 0.920 12 C -0.196 4.196 13 N -0.574 5.574 14 Si 0.796 3.204 15 H -0.191 1.191 16 H -0.205 1.205 17 H -0.192 1.192 18 C -0.130 4.130 19 C -0.093 4.093 20 C -0.130 4.130 21 C -0.153 4.153 22 C -0.143 4.143 23 C -0.143 4.143 24 C -0.136 4.136 25 H 0.111 0.889 26 H 0.134 0.866 27 H 0.151 0.849 28 H 0.134 0.866 29 H 0.065 0.935 30 H 0.106 0.894 31 H 0.022 0.978 32 H -0.012 1.012 33 H 0.075 0.925 34 H 0.124 0.876 35 H 0.073 0.927 36 H 0.128 0.872 37 H 0.151 0.849 38 H 0.162 0.838 39 H 0.166 0.834 40 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 11.211 -19.395 5.139 22.984 hybrid contribution -0.061 1.219 0.568 1.346 sum 11.150 -18.176 5.706 22.074 Atomic orbital electron populations 1.24010 0.96292 1.02615 0.98538 1.23405 0.96646 0.97837 1.02224 1.20064 0.88638 0.85393 0.96679 0.89290 1.88026 1.61637 1.50219 1.29370 1.24096 0.93169 0.93446 0.86666 1.24208 0.93738 0.96103 0.98856 1.68419 1.04219 1.03951 1.44499 1.19827 0.95038 0.87444 0.92431 1.21378 1.21394 0.91268 1.23009 0.92040 1.25963 0.96029 1.01512 0.96084 1.70082 1.33021 1.19355 1.34906 0.85392 0.78781 0.77242 0.78967 1.19070 1.20539 1.19203 1.24231 0.97453 0.94580 0.96719 1.19761 0.94229 1.01222 0.94137 1.21063 1.00057 0.98931 0.92944 1.21419 0.94232 1.00374 0.99230 1.21509 0.95589 0.98896 0.98258 1.21455 1.00702 0.99663 0.92485 1.21256 0.91776 0.99988 1.00563 0.88927 0.86623 0.84916 0.86553 0.93457 0.89396 0.97775 1.01248 0.92517 0.87622 0.92709 0.87212 0.84877 0.83779 0.83368 0.84072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.74 13.84 67.78 0.94 -2.80 16 2 C -0.18 -3.74 9.49 25.65 0.24 -3.50 16 3 C 0.15 3.58 2.74 29.10 0.08 3.66 16 4 H 0.09 1.90 7.58 -2.39 -0.02 1.88 16 5 O -0.37 -11.46 8.15 -148.98 -1.21 -12.68 16 6 C 0.08 2.68 3.37 31.24 0.11 2.78 16 7 C 0.00 0.01 7.29 86.40 0.63 0.64 16 8 N -0.49 -22.09 6.25 -916.31 -5.73 -27.82 16 9 C 0.18 10.09 4.58 85.56 0.39 10.48 16 10 C -0.53 -31.41 8.84 25.60 0.23 -31.18 16 11 H 0.06 3.54 7.80 -2.91 -0.02 3.52 16 12 C 0.00 0.15 5.46 84.65 0.46 0.61 16 13 N -0.93 -57.73 13.29 21.45 0.28 -57.44 16 14 Si 0.97 45.17 29.54 68.60 2.03 47.20 16 15 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 16 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 17 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 18 C 0.00 -0.03 7.41 86.41 0.64 0.61 16 19 C -0.09 -2.24 4.96 -19.86 -0.10 -2.34 16 20 C -0.11 -2.87 9.35 22.27 0.21 -2.66 16 21 C -0.13 -2.90 10.05 22.27 0.22 -2.67 16 22 C -0.12 -2.25 10.05 22.27 0.22 -2.03 16 23 C -0.13 -2.17 10.05 22.27 0.22 -1.94 16 24 C -0.12 -2.31 9.67 22.27 0.22 -2.10 16 25 H 0.09 2.30 5.89 -2.91 -0.02 2.28 16 26 H 0.12 1.93 8.06 -2.91 -0.02 1.90 16 27 H 0.13 2.17 8.06 -2.91 -0.02 2.15 16 28 H 0.12 3.10 7.77 -2.39 -0.02 3.08 16 29 H 0.05 2.15 7.78 -2.38 -0.02 2.13 16 30 H 0.09 3.28 8.14 -2.39 -0.02 3.26 16 31 H 0.00 0.25 8.14 -2.39 -0.02 0.23 16 32 H -0.03 -1.84 7.69 -2.39 -0.02 -1.85 16 33 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 34 H 0.11 3.35 8.14 -2.39 -0.02 3.33 16 35 H 0.05 2.19 7.79 -2.39 -0.02 2.18 16 36 H 0.11 3.07 7.77 -2.91 -0.02 3.04 16 37 H 0.13 2.38 8.06 -2.91 -0.02 2.36 16 38 H 0.14 1.81 8.06 -2.91 -0.02 1.78 16 39 H 0.15 1.70 8.06 -2.91 -0.02 1.68 16 40 H 0.14 2.10 8.04 -2.91 -0.02 2.08 16 Total: -1.00 -68.88 336.83 1.08 -67.80 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: 1.00 Total: 15.39 kcal Atomic # 6 Polarization: -37.16 SS G_CDS: 4.71 Total: -32.45 kcal Atomic # 7 Polarization: -79.82 SS G_CDS: -5.44 Total: -85.26 kcal Atomic # 8 Polarization: -11.46 SS G_CDS: -1.21 Total: -12.68 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Total: -68.88 1.08 -67.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223310491.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.108 kcal (2) G-P(sol) polarization free energy of solvation -68.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.804 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds