Wall clock time and date at job start Mon Mar 30 2020 02:33:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 H 1.08994 * 109.47186 * 358.19888 * 3 2 1 5 5 O 1.42902 * 109.47125 * 238.19766 * 3 2 1 6 6 C 1.42894 * 114.00187 * 90.00517 * 5 3 2 7 7 C 1.52996 * 109.47479 * 179.97438 * 6 5 3 8 8 C 1.52997 * 109.47416 * 179.97438 * 7 6 5 9 9 C 1.53001 * 109.47115 * 180.02562 * 8 7 6 10 10 C 1.53002 * 109.46807 * 180.02562 * 9 8 7 11 11 C 1.50704 * 109.47055 * 180.02562 * 10 9 8 12 12 H 1.08002 * 119.99820 * 0.02562 * 11 10 9 13 13 C 1.37873 * 120.00117 * 180.02562 * 11 10 9 14 14 N 1.31515 * 119.99849 * 359.97438 * 13 11 10 15 15 Si 1.86809 * 119.99861 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.46882 * 359.97438 * 15 13 11 17 17 H 1.48496 * 109.46701 * 120.00042 * 15 13 11 18 18 H 1.48503 * 109.46796 * 240.00015 * 15 13 11 19 19 C 1.50706 * 109.46897 * 118.19883 * 3 2 1 20 20 C 1.38650 * 120.79111 * 264.99700 * 19 3 2 21 21 C 1.38193 * 119.16589 * 180.02562 * 20 19 3 22 22 N 1.31874 * 120.76375 * 0.02562 * 21 20 19 23 23 C 1.31868 * 121.72350 * 359.97438 * 22 21 20 24 24 C 1.38198 * 120.76515 * 0.02562 * 23 22 21 25 25 H 4.18734 * 15.04020 * 359.97438 * 4 2 1 26 26 H 1.09005 * 109.46740 * 299.99457 * 6 5 3 27 27 H 1.08999 * 109.47152 * 59.99398 * 6 5 3 28 28 H 1.08997 * 109.47294 * 300.00236 * 7 6 5 29 29 H 1.09005 * 109.46924 * 59.99698 * 7 6 5 30 30 H 1.09005 * 109.47088 * 299.99743 * 8 7 6 31 31 H 1.08994 * 109.47336 * 59.99754 * 8 7 6 32 32 H 1.08993 * 109.47181 * 300.00102 * 9 8 7 33 33 H 1.09005 * 109.47102 * 60.00161 * 9 8 7 34 34 H 1.09005 * 109.47214 * 299.99596 * 10 9 8 35 35 H 1.08994 * 109.47464 * 60.00582 * 10 9 8 36 36 H 0.96999 * 119.99324 * 179.97438 * 14 13 11 37 37 H 1.08005 * 120.41274 * 0.02562 * 20 19 3 38 38 H 1.07994 * 119.62195 * 180.02562 * 21 20 19 39 39 H 1.07999 * 119.61410 * 179.97438 * 23 22 21 40 40 H 1.08004 * 120.41627 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0098 -1.0263 0.0323 5 8 3.1220 0.7109 1.1450 6 6 3.3162 -0.1097 2.2986 7 6 3.8248 0.7509 3.4569 8 6 4.0322 -0.1276 4.6923 9 6 4.5402 0.7332 5.8507 10 6 4.7481 -0.1455 7.0859 11 6 5.2479 0.7024 8.2271 12 1 5.4014 1.7620 8.0857 13 6 5.5092 0.1253 9.4518 14 7 5.3217 -1.1649 9.6241 15 14 6.1294 1.1763 10.8662 16 1 6.2563 2.5860 10.4168 17 1 5.1694 1.1010 11.9966 18 1 7.4560 0.6770 11.3091 19 6 3.1480 0.6723 -1.2522 20 6 3.4828 -0.0734 -2.3722 21 6 3.9402 0.5771 -3.5024 22 7 4.0599 1.8903 -3.5229 23 6 3.7509 2.6311 -2.4766 24 6 3.2870 2.0505 -1.3115 25 1 -1.0500 -0.0011 0.0005 26 1 2.3701 -0.5732 2.5782 27 1 4.0484 -0.8852 2.0738 28 1 4.7709 1.2142 3.1772 29 1 3.0929 1.5267 3.6818 30 1 3.0858 -0.5905 4.9719 31 1 4.7638 -0.9036 4.4676 32 1 5.4864 1.1965 5.5714 33 1 3.8081 1.5089 6.0752 34 1 3.8020 -0.6092 7.3654 35 1 5.4804 -0.9209 6.8611 36 1 5.5059 -1.5709 10.4856 37 1 3.3873 -1.1492 -2.3613 38 1 4.2027 0.0036 -4.3789 39 1 3.8624 3.7040 -2.5307 40 1 3.0352 2.6627 -0.4581 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224375865.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:20 Heat of formation + Delta-G solvation = 19.053409 kcal Electronic energy + Delta-G solvation = -19053.100953 eV Core-core repulsion = 16026.764881 eV Total energy + Delta-G solvation = -3026.336072 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.59382 -38.57917 -35.58807 -34.14557 -32.75493 -32.46654 -31.52427 -30.36028 -27.58787 -26.17725 -23.88458 -23.30741 -22.74880 -21.07230 -20.08036 -19.01763 -17.41836 -17.10067 -16.21673 -16.13259 -15.96082 -15.74044 -15.10507 -14.59387 -14.41550 -14.08337 -13.92773 -13.47794 -12.99636 -12.63260 -12.24253 -12.07425 -11.88144 -11.54987 -11.29442 -10.99941 -10.91159 -10.60577 -10.55846 -10.45176 -10.39739 -10.06161 -10.00850 -9.75312 -9.64587 -9.45899 -9.26132 -9.00030 -8.33532 -5.98559 -4.00545 0.79672 0.85905 2.30233 2.45071 3.31711 3.38968 3.40844 3.43716 3.49722 4.03507 4.15968 4.35786 4.47002 4.52546 4.76554 4.79002 4.88954 5.05050 5.18458 5.27869 5.37229 5.41419 5.48169 5.54537 5.61729 5.63724 5.68866 5.94883 6.03098 6.24510 6.35843 6.37818 6.47628 6.80155 6.90879 6.94833 7.17479 7.23299 7.64436 7.70433 7.85464 8.02438 8.45674 9.07195 9.63501 11.12891 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.032249 B = 0.002376 C = 0.002297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.034817 B =11781.675563 C =12185.983233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.214 4.214 3 C 0.242 3.758 4 H 0.096 0.904 5 O -0.366 6.366 6 C 0.059 3.941 7 C -0.115 4.115 8 C -0.116 4.116 9 C -0.109 4.109 10 C 0.019 3.981 11 C -0.519 4.519 12 H 0.055 0.945 13 C 0.055 3.945 14 N -0.897 5.897 15 Si 0.891 3.109 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.284 1.284 19 C -0.039 4.039 20 C -0.161 4.161 21 C 0.096 3.904 22 N -0.484 5.484 23 C 0.096 3.904 24 C -0.138 4.138 25 H 0.221 0.779 26 H 0.052 0.948 27 H 0.054 0.946 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.048 0.952 33 H 0.047 0.953 34 H 0.015 0.985 35 H 0.015 0.985 36 H 0.259 0.741 37 H 0.137 0.863 38 H 0.158 0.842 39 H 0.158 0.842 40 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.084 1.476 -25.453 26.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.214 4.214 3 C 0.184 3.816 4 H 0.113 0.887 5 O -0.285 6.285 6 C -0.017 4.017 7 C -0.153 4.153 8 C -0.153 4.153 9 C -0.147 4.147 10 C -0.018 4.018 11 C -0.557 4.557 12 H 0.073 0.927 13 C -0.146 4.146 14 N -0.536 5.536 15 Si 0.719 3.281 16 H -0.197 1.197 17 H -0.210 1.210 18 H -0.210 1.210 19 C -0.047 4.047 20 C -0.180 4.180 21 C -0.061 4.061 22 N -0.193 5.193 23 C -0.061 4.061 24 C -0.157 4.157 25 H 0.238 0.762 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.033 0.967 35 H 0.033 0.967 36 H 0.069 0.931 37 H 0.155 0.845 38 H 0.175 0.825 39 H 0.176 0.824 40 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -6.709 1.950 -26.070 26.990 hybrid contribution -0.288 -0.275 1.736 1.781 sum -6.997 1.675 -24.334 25.376 Atomic orbital electron populations 1.25040 0.95908 0.99453 0.98058 1.23351 0.94537 1.01431 1.02104 1.17403 0.83317 0.96003 0.84912 0.88681 1.88013 1.85288 1.35683 1.19516 1.22831 0.99798 0.93893 0.85191 1.21601 1.01800 0.98830 0.93071 1.21592 1.01225 0.98401 0.94117 1.21612 0.99381 0.98428 0.95269 1.19118 0.96880 0.94798 0.90989 1.21330 1.43670 0.94883 0.95831 0.92669 1.25042 0.95793 0.94956 0.98820 1.69979 1.49403 1.10202 1.24058 0.86549 0.78477 0.80660 0.82402 1.19736 1.21030 1.21026 1.19925 0.96511 0.94405 0.93894 1.21972 1.00815 1.01422 0.93835 1.22720 0.95412 0.90552 0.97376 1.67674 1.14723 1.07171 1.29752 1.22829 0.94493 1.00410 0.88334 1.22066 0.99046 0.94910 0.99727 0.76211 0.92971 0.92813 0.91262 0.91336 0.92384 0.92340 0.93370 0.93390 0.96703 0.96679 0.93112 0.84547 0.82482 0.82432 0.83957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.54 19.25 29.55 0.57 -0.98 16 2 C -0.21 -2.29 12.86 -37.12 -0.48 -2.77 16 3 C 0.24 2.48 2.81 -30.67 -0.09 2.39 16 4 H 0.10 0.80 7.72 -51.93 -0.40 0.40 16 5 O -0.37 -4.47 9.19 -35.23 -0.32 -4.79 16 6 C 0.06 0.71 5.73 37.16 0.21 0.92 16 7 C -0.12 -1.60 5.58 -26.74 -0.15 -1.75 16 8 C -0.12 -1.91 5.21 -26.73 -0.14 -2.05 16 9 C -0.11 -2.25 5.15 -26.73 -0.14 -2.39 16 10 C 0.02 0.50 4.97 -27.88 -0.14 0.36 16 11 C -0.52 -14.93 9.11 -34.44 -0.31 -15.25 16 12 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 13 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 14 N -0.90 -27.26 13.29 55.43 0.74 -26.52 16 15 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 16 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 17 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 18 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 19 C -0.04 -0.39 4.99 -104.32 -0.52 -0.91 16 20 C -0.16 -1.32 9.80 -39.45 -0.39 -1.70 16 21 C 0.10 0.82 11.18 -17.55 -0.20 0.62 16 22 N -0.48 -5.02 10.36 -13.26 -0.14 -5.15 16 23 C 0.10 0.90 11.18 -17.55 -0.20 0.71 16 24 C -0.14 -1.37 9.44 -39.44 -0.37 -1.74 16 25 H 0.22 1.22 7.80 -54.09 -0.42 0.80 16 26 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.05 0.58 8.08 -51.93 -0.42 0.16 16 28 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 30 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 32 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 34 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 37 H 0.14 0.77 8.06 -52.48 -0.42 0.35 16 38 H 0.16 0.88 8.06 -52.49 -0.42 0.45 16 39 H 0.16 1.08 8.06 -52.49 -0.42 0.66 16 40 H 0.14 1.38 7.72 -52.48 -0.41 0.97 16 LS Contribution 351.26 15.07 5.29 5.29 Total: -1.00 -32.94 351.26 -8.14 -41.08 By element: Atomic # 1 Polarization: 2.55 SS G_CDS: -6.26 Total: -3.71 kcal Atomic # 6 Polarization: -20.61 SS G_CDS: -2.43 Total: -23.04 kcal Atomic # 7 Polarization: -32.28 SS G_CDS: 0.60 Total: -31.68 kcal Atomic # 8 Polarization: -4.47 SS G_CDS: -0.32 Total: -4.79 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.94 -8.14 -41.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224375865.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.136 kcal (2) G-P(sol) polarization free energy of solvation -32.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.083 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds