Wall clock time and date at job start Mon Mar 30 2020 02:33:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 H 1.08994 * 109.47186 * 358.19888 * 3 2 1 5 5 O 1.42902 * 109.47125 * 238.19766 * 3 2 1 6 6 C 1.42894 * 114.00187 * 90.00517 * 5 3 2 7 7 C 1.52996 * 109.47479 * 179.97438 * 6 5 3 8 8 C 1.52997 * 109.47416 * 179.97438 * 7 6 5 9 9 C 1.53001 * 109.47115 * 180.02562 * 8 7 6 10 10 C 1.53002 * 109.46807 * 180.02562 * 9 8 7 11 11 C 1.50704 * 109.47055 * 180.02562 * 10 9 8 12 12 H 1.08002 * 119.99820 * 0.02562 * 11 10 9 13 13 C 1.37873 * 120.00117 * 180.02562 * 11 10 9 14 14 N 1.31515 * 119.99849 * 359.97438 * 13 11 10 15 15 Si 1.86809 * 119.99861 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.46882 * 359.97438 * 15 13 11 17 17 H 1.48496 * 109.46701 * 120.00042 * 15 13 11 18 18 H 1.48503 * 109.46796 * 240.00015 * 15 13 11 19 19 C 1.50706 * 109.46897 * 118.19883 * 3 2 1 20 20 C 1.38650 * 120.79111 * 264.99700 * 19 3 2 21 21 C 1.38193 * 119.16589 * 180.02562 * 20 19 3 22 22 N 1.31874 * 120.76375 * 0.02562 * 21 20 19 23 23 C 1.31868 * 121.72350 * 359.97438 * 22 21 20 24 24 C 1.38198 * 120.76515 * 0.02562 * 23 22 21 25 25 H 4.18734 * 15.04020 * 359.97438 * 4 2 1 26 26 H 1.09005 * 109.46740 * 299.99457 * 6 5 3 27 27 H 1.08999 * 109.47152 * 59.99398 * 6 5 3 28 28 H 1.08997 * 109.47294 * 300.00236 * 7 6 5 29 29 H 1.09005 * 109.46924 * 59.99698 * 7 6 5 30 30 H 1.09005 * 109.47088 * 299.99743 * 8 7 6 31 31 H 1.08994 * 109.47336 * 59.99754 * 8 7 6 32 32 H 1.08993 * 109.47181 * 300.00102 * 9 8 7 33 33 H 1.09005 * 109.47102 * 60.00161 * 9 8 7 34 34 H 1.09005 * 109.47214 * 299.99596 * 10 9 8 35 35 H 1.08994 * 109.47464 * 60.00582 * 10 9 8 36 36 H 0.96999 * 119.99324 * 179.97438 * 14 13 11 37 37 H 1.08005 * 120.41274 * 0.02562 * 20 19 3 38 38 H 1.07994 * 119.62195 * 180.02562 * 21 20 19 39 39 H 1.07999 * 119.61410 * 179.97438 * 23 22 21 40 40 H 1.08004 * 120.41627 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0098 -1.0263 0.0323 5 8 3.1220 0.7109 1.1450 6 6 3.3162 -0.1097 2.2986 7 6 3.8248 0.7509 3.4569 8 6 4.0322 -0.1276 4.6923 9 6 4.5402 0.7332 5.8507 10 6 4.7481 -0.1455 7.0859 11 6 5.2479 0.7024 8.2271 12 1 5.4014 1.7620 8.0857 13 6 5.5092 0.1253 9.4518 14 7 5.3217 -1.1649 9.6241 15 14 6.1294 1.1763 10.8662 16 1 6.2563 2.5860 10.4168 17 1 5.1694 1.1010 11.9966 18 1 7.4560 0.6770 11.3091 19 6 3.1480 0.6723 -1.2522 20 6 3.4828 -0.0734 -2.3722 21 6 3.9402 0.5771 -3.5024 22 7 4.0599 1.8903 -3.5229 23 6 3.7509 2.6311 -2.4766 24 6 3.2870 2.0505 -1.3115 25 1 -1.0500 -0.0011 0.0005 26 1 2.3701 -0.5732 2.5782 27 1 4.0484 -0.8852 2.0738 28 1 4.7709 1.2142 3.1772 29 1 3.0929 1.5267 3.6818 30 1 3.0858 -0.5905 4.9719 31 1 4.7638 -0.9036 4.4676 32 1 5.4864 1.1965 5.5714 33 1 3.8081 1.5089 6.0752 34 1 3.8020 -0.6092 7.3654 35 1 5.4804 -0.9209 6.8611 36 1 5.5059 -1.5709 10.4856 37 1 3.3873 -1.1492 -2.3613 38 1 4.2027 0.0036 -4.3789 39 1 3.8624 3.7040 -2.5307 40 1 3.0352 2.6627 -0.4581 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224375865.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:17 Heat of formation + Delta-G solvation = 1.056799 kcal Electronic energy + Delta-G solvation = -19053.881345 eV Core-core repulsion = 16026.764881 eV Total energy + Delta-G solvation = -3027.116464 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.27315 -39.42930 -37.02914 -35.30765 -34.47344 -33.16942 -32.20134 -31.96069 -28.70247 -27.57106 -25.17441 -24.35357 -23.44073 -22.42694 -21.75705 -19.73289 -18.47949 -18.11965 -17.82925 -17.07550 -16.65074 -16.52826 -16.46777 -16.13715 -15.52282 -14.93352 -14.60800 -14.55539 -14.49363 -14.05394 -13.58334 -13.47450 -13.19828 -12.83139 -12.73240 -12.53085 -12.31914 -12.06169 -11.95610 -11.67415 -11.36541 -11.32516 -11.30206 -10.99477 -10.94697 -10.71562 -10.56079 -10.45071 -10.11123 -8.20702 -6.31690 0.12590 0.18521 1.39375 1.39527 1.53163 1.55261 1.73033 2.40433 2.62332 2.81624 3.12173 3.36380 3.56743 3.65604 3.82500 4.00203 4.06661 4.12943 4.21079 4.24747 4.31880 4.39737 4.48037 4.65622 4.71970 4.85794 4.87751 4.93686 4.94837 4.96094 5.06332 5.26354 5.29654 5.30103 5.38840 5.55522 5.72043 5.78374 5.87095 6.05322 6.26237 6.53147 6.85990 6.98211 7.37626 8.91314 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.032249 B = 0.002376 C = 0.002297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.034817 B =11781.675563 C =12185.983233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.252 4.252 3 C 0.240 3.760 4 H 0.112 0.888 5 O -0.380 6.380 6 C 0.063 3.937 7 C -0.107 4.107 8 C -0.107 4.107 9 C -0.100 4.100 10 C 0.021 3.979 11 C -0.544 4.544 12 H 0.058 0.942 13 C -0.003 4.003 14 N -0.934 5.934 15 Si 0.965 3.035 16 H -0.263 1.263 17 H -0.277 1.277 18 H -0.277 1.277 19 C -0.052 4.052 20 C -0.158 4.158 21 C 0.091 3.909 22 N -0.508 5.508 23 C 0.088 3.912 24 C -0.152 4.152 25 H 0.250 0.750 26 H 0.054 0.946 27 H 0.067 0.933 28 H 0.070 0.930 29 H 0.065 0.935 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.050 0.950 33 H 0.049 0.951 34 H -0.009 1.009 35 H -0.008 1.008 36 H 0.264 0.736 37 H 0.163 0.837 38 H 0.185 0.815 39 H 0.175 0.825 40 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.256 1.762 -26.249 27.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.253 4.253 3 C 0.182 3.818 4 H 0.130 0.870 5 O -0.300 6.300 6 C -0.013 4.013 7 C -0.144 4.144 8 C -0.144 4.144 9 C -0.137 4.137 10 C -0.016 4.016 11 C -0.582 4.582 12 H 0.077 0.923 13 C -0.201 4.201 14 N -0.574 5.574 15 Si 0.790 3.210 16 H -0.187 1.187 17 H -0.203 1.203 18 H -0.203 1.203 19 C -0.060 4.060 20 C -0.177 4.177 21 C -0.065 4.065 22 N -0.218 5.218 23 C -0.068 4.068 24 C -0.172 4.172 25 H 0.267 0.733 26 H 0.073 0.927 27 H 0.085 0.915 28 H 0.088 0.912 29 H 0.084 0.916 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.009 0.991 35 H 0.010 0.990 36 H 0.072 0.928 37 H 0.181 0.819 38 H 0.202 0.798 39 H 0.192 0.808 40 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -6.886 2.244 -26.883 27.841 hybrid contribution -0.280 -0.402 1.948 2.008 sum -7.166 1.842 -24.935 26.010 Atomic orbital electron populations 1.25869 0.96814 0.98076 0.96574 1.23706 0.95257 1.02781 1.03510 1.17539 0.83412 0.96658 0.84182 0.87037 1.87970 1.85583 1.36394 1.20032 1.22694 1.00234 0.93559 0.84766 1.21417 1.01931 0.98426 0.92646 1.21432 1.01061 0.98147 0.93787 1.21444 0.99806 0.98009 0.94458 1.19053 0.94734 0.94786 0.93051 1.21779 1.43972 0.95392 0.97055 0.92348 1.26010 0.95838 0.96313 1.01895 1.70104 1.50239 1.12049 1.25050 0.85394 0.77998 0.79083 0.78548 1.18658 1.20282 1.20265 1.20091 0.96944 0.94582 0.94411 1.22253 0.99769 1.02708 0.93017 1.23234 0.94634 0.90239 0.98430 1.67715 1.15593 1.08258 1.30220 1.23108 0.94273 1.01347 0.88056 1.22116 0.99887 0.95277 0.99883 0.73325 0.92728 0.91452 0.91173 0.91619 0.92354 0.92020 0.93123 0.93270 0.99080 0.98966 0.92766 0.81941 0.79786 0.80780 0.84464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.61 19.25 74.32 1.43 -1.18 16 2 C -0.25 -5.09 12.86 31.12 0.40 -4.69 16 3 C 0.24 4.64 2.81 28.04 0.08 4.72 16 4 H 0.11 1.69 7.72 -2.39 -0.02 1.68 16 5 O -0.38 -8.94 9.19 -148.98 -1.37 -10.31 16 6 C 0.06 1.44 5.73 71.98 0.41 1.85 16 7 C -0.11 -2.85 5.58 30.59 0.17 -2.68 16 8 C -0.11 -3.46 5.21 30.59 0.16 -3.30 16 9 C -0.10 -4.11 5.15 30.60 0.16 -3.95 16 10 C 0.02 1.12 4.97 29.85 0.15 1.26 16 11 C -0.54 -31.62 9.11 25.60 0.23 -31.39 16 12 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 13 C 0.00 -0.18 5.46 84.65 0.46 0.28 16 14 N -0.93 -57.51 13.29 21.45 0.28 -57.23 16 15 Si 0.97 44.79 29.54 68.60 2.03 46.82 16 16 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 17 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 18 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 19 C -0.05 -0.98 4.99 -19.67 -0.10 -1.08 16 20 C -0.16 -2.32 9.80 22.36 0.22 -2.10 16 21 C 0.09 1.40 11.18 84.68 0.95 2.34 16 22 N -0.51 -10.08 10.36 -195.86 -2.03 -12.11 16 23 C 0.09 1.62 11.18 84.68 0.95 2.57 16 24 C -0.15 -2.98 9.44 22.36 0.21 -2.77 16 25 H 0.25 2.13 7.80 -4.42 -0.03 2.10 16 26 H 0.05 1.21 8.14 -2.38 -0.02 1.19 16 27 H 0.07 1.34 8.08 -2.39 -0.02 1.32 16 28 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 29 H 0.07 1.79 8.14 -2.38 -0.02 1.77 16 30 H 0.06 1.88 8.14 -2.38 -0.02 1.86 16 31 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 33 H 0.05 1.99 8.14 -2.38 -0.02 1.97 16 34 H -0.01 -0.53 8.14 -2.38 -0.02 -0.55 16 35 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 36 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 37 H 0.16 1.41 8.06 -2.91 -0.02 1.38 16 38 H 0.19 1.61 8.06 -2.91 -0.02 1.59 16 39 H 0.18 2.34 8.06 -2.91 -0.02 2.32 16 40 H 0.14 2.72 7.72 -2.91 -0.02 2.69 16 Total: -1.00 -70.92 351.26 5.78 -65.14 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: 0.99 Total: 7.79 kcal Atomic # 6 Polarization: -45.99 SS G_CDS: 5.88 Total: -40.11 kcal Atomic # 7 Polarization: -67.59 SS G_CDS: -1.74 Total: -69.33 kcal Atomic # 8 Polarization: -8.94 SS G_CDS: -1.37 Total: -10.31 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -70.92 5.78 -65.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224375865.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.197 kcal (2) G-P(sol) polarization free energy of solvation -70.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.140 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds