Wall clock time and date at job start Mon Mar 30 2020 01:13:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50704 * 120.00284 * 2 1 4 4 C 1.50699 * 109.47372 * 124.99960 * 3 2 1 5 5 C 1.38170 * 120.02887 * 264.95774 * 4 3 2 6 6 C 1.38241 * 120.05486 * 180.02562 * 5 4 3 7 7 C 1.38286 * 120.11423 * 0.02562 * 6 5 4 8 8 C 1.38123 * 120.05308 * 0.02562 * 7 6 5 9 9 C 1.38707 * 120.02518 * 85.00005 * 4 3 2 10 10 O 1.35898 * 120.05993 * 0.02562 * 9 4 3 11 11 C 1.42894 * 117.00375 * 185.33708 * 10 9 4 12 12 H 1.09009 * 110.64332 * 37.89762 * 11 10 9 13 13 C 1.55155 * 110.72459 * 161.23134 * 11 10 9 14 14 C 1.54909 * 101.58343 * 153.86522 * 13 11 10 15 15 N 1.47431 * 104.83145 * 322.99129 * 14 13 11 16 16 C 1.36939 * 125.64928 * 204.16152 * 15 14 13 17 17 H 1.07999 * 119.99720 * 179.97438 * 16 15 14 18 18 C 1.38811 * 119.99676 * 359.96438 * 16 15 14 19 19 N 1.31616 * 120.00205 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99603 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47163 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47332 * 119.99923 * 20 18 16 23 23 H 1.48496 * 109.47376 * 239.99863 * 20 18 16 24 24 C 1.47020 * 108.70025 * 24.13213 * 15 14 13 25 25 H 1.07999 * 120.00157 * 359.97438 * 1 2 3 26 26 H 1.07997 * 119.99835 * 179.97438 * 1 2 3 27 27 H 1.07999 * 120.00157 * 180.02562 * 2 1 3 28 28 H 1.09006 * 109.46658 * 5.00111 * 3 2 1 29 29 H 1.09004 * 109.47393 * 245.00528 * 3 2 1 30 30 H 1.07999 * 119.97030 * 0.02562 * 5 4 3 31 31 H 1.07998 * 119.94678 * 180.27506 * 6 5 4 32 32 H 1.07997 * 119.97285 * 179.97438 * 7 6 5 33 33 H 1.08007 * 120.03189 * 180.02562 * 8 7 6 34 34 H 1.08991 * 111.00773 * 271.94225 * 13 11 10 35 35 H 1.09006 * 111.00134 * 35.79403 * 13 11 10 36 36 H 1.09003 * 110.36600 * 204.16121 * 14 13 11 37 37 H 1.08993 * 110.46307 * 81.88004 * 14 13 11 38 38 H 0.97001 * 119.99572 * 179.97438 * 19 18 16 39 39 H 1.09009 * 109.88035 * 239.52139 * 24 15 14 40 40 H 1.08995 * 110.01371 * 118.42780 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0205 1.3327 1.1638 5 6 2.6464 1.9293 2.3526 6 6 3.5240 1.9554 3.4204 7 6 4.7782 1.3852 3.3017 8 6 5.1573 0.7885 2.1152 9 6 4.2779 0.7599 1.0422 10 8 4.6487 0.1736 -0.1263 11 6 5.9099 -0.4980 -0.1437 12 1 6.0840 -1.0131 0.8011 13 6 5.9883 -1.4882 -1.3357 14 6 7.5160 -1.5582 -1.5819 15 7 8.0012 -0.1880 -1.3356 16 6 9.1452 0.3587 -1.8531 17 1 9.4144 1.3764 -1.6117 18 6 9.9587 -0.3953 -2.6876 19 7 9.6309 -1.6357 -2.9812 20 14 11.5188 0.3507 -3.3940 21 1 11.6594 1.7494 -2.9155 22 1 12.6922 -0.4447 -2.9516 23 1 11.4449 0.3406 -4.8771 24 6 7.0530 0.4945 -0.4431 25 1 -0.5400 0.9353 0.0004 26 1 -0.5400 -0.9353 -0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 1.3585 2.1317 0.0896 29 1 2.6213 1.4027 -0.9314 30 1 1.6676 2.3757 2.4476 31 1 3.2281 2.4183 4.3502 32 1 5.4622 1.4072 4.1373 33 1 6.1369 0.3429 2.0230 34 1 5.5920 -2.4650 -1.0588 35 1 5.4697 -1.0909 -2.2083 36 1 7.7213 -1.8540 -2.6107 37 1 7.9824 -2.2564 -0.8869 38 1 10.1993 -2.1624 -3.5647 39 1 6.6542 1.3819 -0.9348 40 1 7.5510 0.7771 0.4843 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001228843586.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:14 Heat of formation + Delta-G solvation = 31.575328 kcal Electronic energy + Delta-G solvation = -20742.281010 eV Core-core repulsion = 17716.487929 eV Total energy + Delta-G solvation = -3025.793081 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.22993 -37.98227 -36.03503 -35.12557 -32.35880 -31.18373 -29.98198 -29.11253 -27.39948 -26.30055 -24.61608 -22.51941 -21.66507 -20.28843 -20.03504 -19.70407 -17.83445 -17.03829 -15.92056 -15.78997 -15.23115 -14.80200 -14.73262 -14.31596 -13.96157 -13.79535 -13.31554 -13.17339 -12.77569 -12.46275 -12.19841 -11.82583 -11.80927 -11.58325 -11.41215 -11.15163 -11.03860 -10.88501 -10.77097 -10.43802 -10.23512 -10.04782 -9.84844 -9.63564 -9.34411 -8.76835 -8.70947 -7.94687 -6.90986 -5.71045 -3.13236 1.37695 1.55291 2.30594 3.37583 3.42758 3.45392 3.50593 3.83998 4.45416 4.82414 4.86670 5.01481 5.13457 5.17771 5.21645 5.30336 5.34837 5.40947 5.48524 5.59053 5.61430 5.68180 5.75878 5.89403 5.94936 6.09928 6.23515 6.36814 6.44768 6.46482 6.48142 6.56483 6.60071 6.62679 6.63639 6.78702 6.96944 7.40603 7.57167 7.71450 7.80207 8.28631 9.15773 9.76088 10.39217 11.33428 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.025538 B = 0.004228 C = 0.003861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.147906 B = 6621.347702 C = 7250.672059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.130 4.130 3 C -0.046 4.046 4 C -0.119 4.119 5 C -0.081 4.081 6 C -0.166 4.166 7 C -0.083 4.083 8 C -0.206 4.206 9 C 0.144 3.856 10 O -0.301 6.301 11 C 0.070 3.930 12 H 0.075 0.925 13 C -0.134 4.134 14 C 0.152 3.848 15 N -0.601 5.601 16 C -0.224 4.224 17 H 0.079 0.921 18 C -0.010 4.010 19 N -0.923 5.923 20 Si 0.916 3.084 21 H -0.280 1.280 22 H -0.290 1.290 23 H -0.289 1.289 24 C 0.118 3.882 25 H 0.093 0.907 26 H 0.095 0.905 27 H 0.109 0.891 28 H 0.072 0.928 29 H 0.088 0.912 30 H 0.123 0.877 31 H 0.119 0.881 32 H 0.121 0.879 33 H 0.132 0.868 34 H 0.066 0.934 35 H 0.074 0.926 36 H 0.114 0.886 37 H 0.016 0.984 38 H 0.253 0.747 39 H 0.034 0.966 40 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.099 3.605 9.720 18.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.148 4.148 3 C -0.083 4.083 4 C -0.119 4.119 5 C -0.099 4.099 6 C -0.184 4.184 7 C -0.101 4.101 8 C -0.225 4.225 9 C 0.098 3.902 10 O -0.213 6.213 11 C 0.014 3.986 12 H 0.093 0.907 13 C -0.172 4.172 14 C 0.028 3.972 15 N -0.328 5.328 16 C -0.352 4.352 17 H 0.097 0.903 18 C -0.205 4.205 19 N -0.571 5.571 20 Si 0.747 3.253 21 H -0.205 1.205 22 H -0.217 1.217 23 H -0.216 1.216 24 C -0.008 4.008 25 H 0.112 0.888 26 H 0.113 0.887 27 H 0.127 0.873 28 H 0.090 0.910 29 H 0.106 0.894 30 H 0.141 0.859 31 H 0.137 0.863 32 H 0.139 0.861 33 H 0.150 0.850 34 H 0.085 0.915 35 H 0.092 0.908 36 H 0.131 0.869 37 H 0.034 0.966 38 H 0.064 0.936 39 H 0.052 0.948 40 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -15.012 3.545 9.390 18.058 hybrid contribution 1.087 0.289 -0.023 1.125 sum -13.925 3.834 9.367 17.215 Atomic orbital electron populations 1.23755 0.95770 1.01516 1.03419 1.22910 0.95634 0.98524 0.97760 1.19578 0.96369 0.95445 0.96925 1.19075 0.92951 1.03302 0.96595 1.20796 0.99142 0.98121 0.91858 1.20945 0.94720 1.03691 0.99028 1.20927 0.96141 0.96261 0.96817 1.21440 1.00872 1.05971 0.94167 1.18918 0.92718 0.92904 0.85668 1.86148 1.38074 1.66540 1.30555 1.23657 0.81243 0.93606 1.00111 0.90690 1.23176 1.01477 0.96440 0.96148 1.21998 0.85168 0.86117 1.03960 1.44385 1.23807 1.10582 1.54039 1.19138 0.96739 0.96895 1.22388 0.90318 1.24794 0.99340 0.96137 1.00265 1.69767 1.38478 1.08185 1.40701 0.85968 0.82580 0.78117 0.78660 1.20478 1.21676 1.21632 1.21731 0.90168 0.94707 0.94201 0.88825 0.88707 0.87294 0.90984 0.89389 0.85909 0.86319 0.86100 0.85000 0.91546 0.90780 0.86868 0.96556 0.93644 0.94766 0.95698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.07 14.32 29.02 0.42 -1.66 16 2 C -0.13 -1.53 9.50 -36.02 -0.34 -1.88 16 3 C -0.05 -0.57 5.51 -29.03 -0.16 -0.73 16 4 C -0.12 -1.62 5.13 -104.47 -0.54 -2.15 16 5 C -0.08 -0.96 9.68 -39.60 -0.38 -1.34 16 6 C -0.17 -1.90 10.04 -39.56 -0.40 -2.29 16 7 C -0.08 -1.04 10.04 -39.61 -0.40 -1.44 16 8 C -0.21 -3.03 8.78 -39.43 -0.35 -3.38 16 9 C 0.14 2.25 6.60 -39.22 -0.26 1.99 16 10 O -0.30 -5.21 9.01 -19.42 -0.17 -5.38 16 11 C 0.07 1.29 2.77 -24.90 -0.07 1.22 16 12 H 0.08 1.29 6.57 -51.92 -0.34 0.95 16 13 C -0.13 -2.58 6.81 -24.58 -0.17 -2.75 16 14 C 0.15 3.67 5.89 -2.53 -0.01 3.66 16 15 N -0.60 -15.54 3.39 -170.07 -0.58 -16.12 16 16 C -0.22 -6.26 10.27 -15.06 -0.15 -6.42 16 17 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 18 C -0.01 -0.28 5.49 -17.43 -0.10 -0.37 16 19 N -0.92 -26.64 10.09 55.49 0.56 -26.08 16 20 Si 0.92 22.00 29.55 -169.99 -5.02 16.98 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 24 C 0.12 2.56 6.53 -3.07 -0.02 2.54 16 25 H 0.09 0.82 7.84 -52.49 -0.41 0.41 16 26 H 0.09 0.85 8.06 -52.49 -0.42 0.42 16 27 H 0.11 1.38 8.06 -52.49 -0.42 0.96 16 28 H 0.07 0.74 7.70 -51.93 -0.40 0.34 16 29 H 0.09 1.19 7.69 -51.93 -0.40 0.79 16 30 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 31 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 32 H 0.12 1.25 8.06 -52.49 -0.42 0.82 16 33 H 0.13 1.99 5.32 -52.48 -0.28 1.71 16 34 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 36 H 0.11 3.05 5.87 -51.93 -0.31 2.75 16 37 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 39 H 0.03 0.77 8.06 -51.92 -0.42 0.35 16 40 H 0.03 0.53 7.44 -51.93 -0.39 0.14 16 LS Contribution 328.07 15.07 4.94 4.94 Total: -1.00 -29.74 328.07 -9.07 -38.81 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: -5.87 Total: 1.87 kcal Atomic # 6 Polarization: -12.08 SS G_CDS: -2.93 Total: -15.01 kcal Atomic # 7 Polarization: -42.19 SS G_CDS: -0.02 Total: -42.21 kcal Atomic # 8 Polarization: -5.21 SS G_CDS: -0.17 Total: -5.38 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -29.74 -9.07 -38.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228843586.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.382 kcal (2) G-P(sol) polarization free energy of solvation -29.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.806 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds