Wall clock time and date at job start Mon Mar 30 2020 01:13:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50704 * 120.00172 * 2 1 4 4 C 1.50693 * 109.47084 * 124.99951 * 3 2 1 5 5 C 1.38171 * 120.02829 * 265.02006 * 4 3 2 6 6 C 1.38238 * 120.05832 * 179.97438 * 5 4 3 7 7 C 1.38294 * 120.10836 * 359.97438 * 6 5 4 8 8 C 1.38121 * 120.05892 * 359.76920 * 7 6 5 9 9 C 1.38713 * 120.03140 * 85.00389 * 4 3 2 10 10 O 1.35905 * 120.04973 * 0.02562 * 9 4 3 11 11 C 1.42901 * 116.99607 * 174.90288 * 10 9 4 12 12 H 1.09007 * 110.63815 * 321.84096 * 11 10 9 13 13 C 1.55160 * 110.72081 * 198.50982 * 11 10 9 14 14 C 1.55126 * 101.48621 * 205.96709 * 13 11 10 15 15 N 1.47424 * 104.72178 * 37.29260 * 14 13 11 16 16 C 1.36938 * 125.64888 * 155.82035 * 15 14 13 17 17 H 1.07994 * 120.00059 * 179.69003 * 16 15 14 18 18 C 1.38812 * 119.99994 * 359.68675 * 16 15 14 19 19 N 1.31625 * 119.99961 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 120.00369 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47381 * 180.02562 * 20 18 16 22 22 H 1.48506 * 109.47053 * 300.00575 * 20 18 16 23 23 H 1.48502 * 109.47184 * 59.99877 * 20 18 16 24 24 C 1.47024 * 108.70468 * 335.55243 * 15 14 13 25 25 H 1.07996 * 119.99840 * 0.02562 * 1 2 3 26 26 H 1.07995 * 119.99783 * 180.02562 * 1 2 3 27 27 H 1.08005 * 119.99803 * 179.97438 * 2 1 3 28 28 H 1.08996 * 109.46545 * 4.99497 * 3 2 1 29 29 H 1.08999 * 109.46604 * 245.00101 * 3 2 1 30 30 H 1.07997 * 119.96662 * 359.95832 * 5 4 3 31 31 H 1.07993 * 119.94580 * 180.02562 * 6 5 4 32 32 H 1.08000 * 119.96783 * 180.02562 * 7 6 5 33 33 H 1.07992 * 120.03082 * 180.27463 * 8 7 6 34 34 H 1.08998 * 111.00019 * 324.20542 * 13 11 10 35 35 H 1.08997 * 111.00595 * 88.01687 * 13 11 10 36 36 H 1.09004 * 110.49565 * 278.45333 * 14 13 11 37 37 H 1.08998 * 110.34476 * 156.05370 * 14 13 11 38 38 H 0.96992 * 120.00380 * 179.97438 * 19 18 16 39 39 H 1.08995 * 109.88108 * 120.70515 * 24 15 14 40 40 H 1.09005 * 109.88190 * 241.71665 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0205 1.3326 1.1638 5 6 2.6459 1.9281 2.3530 6 6 3.5230 1.9533 3.4212 7 6 4.7770 1.3823 3.3028 8 6 5.1543 0.7811 2.1179 9 6 4.2780 0.7599 1.0423 10 8 4.6488 0.1738 -0.1264 11 6 5.9954 -0.2958 -0.2180 12 1 6.6772 0.3928 0.2813 13 6 6.4053 -0.5019 -1.7002 14 6 7.5100 -1.5829 -1.5677 15 7 7.0382 -2.4704 -0.4891 16 6 7.3996 -3.7801 -0.3178 17 1 7.0006 -4.3464 0.5107 18 6 8.2785 -4.3799 -1.2092 19 7 8.7651 -3.6895 -2.2188 20 14 8.7710 -6.1666 -0.9761 21 1 9.7126 -6.5652 -2.0530 22 1 9.4315 -6.3298 0.3439 23 1 7.5606 -7.0251 -1.0333 24 6 6.1205 -1.7146 0.3759 25 1 -0.5400 0.9353 -0.0004 26 1 -0.5399 -0.9353 0.0004 27 1 1.8500 -0.9354 0.0004 28 1 1.3586 2.1316 0.0895 29 1 2.6213 1.4025 -0.9314 30 1 1.6671 2.3745 2.4479 31 1 3.2281 2.4188 4.3500 32 1 5.4602 1.4029 4.1389 33 1 6.1320 0.3315 2.0274 34 1 5.5651 -0.8674 -2.2906 35 1 6.8086 0.4171 -2.1255 36 1 8.4607 -1.1255 -1.2939 37 1 7.6099 -2.1389 -2.4999 38 1 9.3796 -4.1084 -2.8414 39 1 5.1435 -2.1975 0.3913 40 1 6.5237 -1.6615 1.3873 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001228843590.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:17 Heat of formation + Delta-G solvation = 16.787514 kcal Electronic energy + Delta-G solvation = -20790.677714 eV Core-core repulsion = 17764.243385 eV Total energy + Delta-G solvation = -3026.434329 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.41480 -39.35182 -37.59195 -36.02983 -34.31637 -32.16020 -31.44348 -30.59246 -29.11549 -27.24566 -26.54774 -23.75868 -22.77157 -22.03312 -21.48276 -20.65237 -19.03797 -19.01662 -17.18136 -16.92647 -16.64825 -16.60915 -15.76170 -15.52615 -15.50943 -15.10246 -14.57128 -14.38402 -14.16804 -13.94239 -13.67398 -13.38412 -13.10504 -12.92254 -12.77963 -12.68309 -12.38065 -12.31396 -12.08904 -12.02510 -11.92045 -11.72852 -11.58036 -11.41065 -10.79666 -10.21058 -9.74995 -9.05667 -8.96986 -7.82764 -5.28917 0.39404 0.52952 1.45138 1.45302 1.48619 1.55245 2.18555 2.47784 2.84279 3.27817 3.58299 3.64562 3.87831 3.90826 3.92510 4.00967 4.13825 4.25757 4.34217 4.41071 4.48425 4.54191 4.58566 4.71025 4.80715 4.83310 4.92165 4.93420 5.01250 5.10889 5.17605 5.39069 5.46386 5.52369 5.55054 5.62604 5.71371 5.77301 5.90818 5.96530 6.23602 6.51004 7.04168 7.69014 8.32181 9.19091 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.022526 B = 0.004349 C = 0.004116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.719364 B = 6436.958778 C = 6800.727340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.159 4.159 3 C -0.040 4.040 4 C -0.125 4.125 5 C -0.080 4.080 6 C -0.157 4.157 7 C -0.090 4.090 8 C -0.222 4.222 9 C 0.110 3.890 10 O -0.309 6.309 11 C 0.089 3.911 12 H 0.089 0.911 13 C -0.120 4.120 14 C 0.155 3.845 15 N -0.622 5.622 16 C -0.249 4.249 17 H 0.078 0.922 18 C -0.060 4.060 19 N -0.946 5.946 20 Si 0.983 3.017 21 H -0.289 1.289 22 H -0.277 1.277 23 H -0.278 1.278 24 C 0.120 3.880 25 H 0.117 0.883 26 H 0.101 0.899 27 H 0.082 0.918 28 H 0.099 0.901 29 H 0.071 0.929 30 H 0.154 0.846 31 H 0.152 0.848 32 H 0.142 0.858 33 H 0.120 0.880 34 H 0.069 0.931 35 H 0.097 0.903 36 H 0.001 0.999 37 H 0.084 0.916 38 H 0.251 0.749 39 H 0.020 0.980 40 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.213 13.663 7.983 20.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.177 4.177 3 C -0.077 4.077 4 C -0.126 4.126 5 C -0.098 4.098 6 C -0.175 4.175 7 C -0.108 4.108 8 C -0.241 4.241 9 C 0.065 3.935 10 O -0.223 6.223 11 C 0.032 3.968 12 H 0.107 0.893 13 C -0.159 4.159 14 C 0.030 3.970 15 N -0.350 5.350 16 C -0.377 4.377 17 H 0.095 0.905 18 C -0.253 4.253 19 N -0.595 5.595 20 Si 0.811 3.189 21 H -0.214 1.214 22 H -0.203 1.203 23 H -0.204 1.204 24 C -0.006 4.006 25 H 0.135 0.865 26 H 0.119 0.881 27 H 0.100 0.900 28 H 0.117 0.883 29 H 0.089 0.911 30 H 0.172 0.828 31 H 0.170 0.830 32 H 0.160 0.840 33 H 0.138 0.862 34 H 0.087 0.913 35 H 0.115 0.885 36 H 0.019 0.981 37 H 0.101 0.899 38 H 0.060 0.940 39 H 0.038 0.962 40 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -13.203 13.477 7.710 20.381 hybrid contribution 1.002 -1.363 0.091 1.694 sum -12.201 12.114 7.802 18.881 Atomic orbital electron populations 1.23978 0.94986 1.02908 1.00297 1.22819 0.96428 0.97781 1.00675 1.19551 0.96391 0.96120 0.95640 1.19400 0.92567 1.02611 0.98037 1.21199 1.00431 0.97246 0.90912 1.21378 0.93793 1.02212 1.00096 1.21239 0.97357 0.95715 0.96489 1.21483 1.00770 1.06853 0.94992 1.19250 0.94581 0.94131 0.85551 1.86117 1.30292 1.72202 1.33641 1.23297 0.81224 0.93749 0.98513 0.89310 1.23019 0.99227 1.00186 0.93443 1.21838 0.91809 0.89061 0.94282 1.44654 1.51970 1.08649 1.29681 1.19391 1.22262 0.86565 1.09484 0.90456 1.25640 0.99581 1.02721 0.97351 1.69981 1.35850 1.36529 1.17184 0.85088 0.77659 0.79067 0.77104 1.21443 1.20344 1.20377 1.21794 0.93278 0.91837 0.93673 0.86484 0.88111 0.90012 0.88297 0.91089 0.82807 0.83042 0.84033 0.86209 0.91253 0.88462 0.98127 0.89853 0.93961 0.96167 0.95407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.54 14.32 67.78 0.97 -2.57 16 2 C -0.16 -3.88 9.50 25.64 0.24 -3.64 16 3 C -0.04 -0.93 5.51 29.10 0.16 -0.77 16 4 C -0.13 -3.24 5.13 -19.77 -0.10 -3.34 16 5 C -0.08 -1.63 9.68 22.25 0.22 -1.41 16 6 C -0.16 -3.05 10.04 22.28 0.22 -2.82 16 7 C -0.09 -2.07 10.04 22.26 0.22 -1.85 16 8 C -0.22 -6.46 8.77 22.36 0.20 -6.27 16 9 C 0.11 3.41 6.60 22.51 0.15 3.56 16 10 O -0.31 -10.90 9.01 -92.48 -0.83 -11.74 16 11 C 0.09 3.33 2.77 31.78 0.09 3.42 16 12 H 0.09 3.07 6.59 -2.38 -0.02 3.05 16 13 C -0.12 -4.71 6.82 32.06 0.22 -4.49 16 14 C 0.15 7.75 5.91 86.93 0.51 8.26 16 15 N -0.62 -33.33 3.39 -691.56 -2.35 -35.67 16 16 C -0.25 -14.34 10.27 84.03 0.86 -13.47 16 17 H 0.08 4.31 7.83 -2.91 -0.02 4.29 16 18 C -0.06 -3.43 5.49 84.86 0.47 -2.97 16 19 N -0.95 -56.25 10.08 21.65 0.22 -56.03 16 20 Si 0.98 45.88 29.55 68.60 2.03 47.91 16 21 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 22 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 23 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 24 C 0.12 5.37 6.51 86.73 0.56 5.93 16 25 H 0.12 1.68 7.84 -2.91 -0.02 1.66 16 26 H 0.10 1.80 8.06 -2.91 -0.02 1.77 16 27 H 0.08 2.44 8.06 -2.91 -0.02 2.42 16 28 H 0.10 1.68 7.70 -2.39 -0.02 1.66 16 29 H 0.07 1.83 7.69 -2.39 -0.02 1.81 16 30 H 0.15 2.14 8.06 -2.91 -0.02 2.12 16 31 H 0.15 1.95 8.06 -2.91 -0.02 1.93 16 32 H 0.14 2.57 8.06 -2.91 -0.02 2.55 16 33 H 0.12 3.67 5.31 -2.91 -0.02 3.65 16 34 H 0.07 2.77 8.14 -2.39 -0.02 2.75 16 35 H 0.10 3.19 8.14 -2.39 -0.02 3.17 16 36 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 37 H 0.08 4.70 5.86 -2.39 -0.01 4.69 16 38 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 39 H 0.02 0.95 8.06 -2.39 -0.02 0.94 16 40 H 0.03 1.22 7.43 -2.38 -0.02 1.20 16 Total: -1.00 -66.03 328.05 5.07 -60.96 By element: Atomic # 1 Polarization: 15.99 SS G_CDS: 1.01 Total: 17.00 kcal Atomic # 6 Polarization: -27.42 SS G_CDS: 4.99 Total: -22.43 kcal Atomic # 7 Polarization: -89.58 SS G_CDS: -2.13 Total: -91.71 kcal Atomic # 8 Polarization: -10.90 SS G_CDS: -0.83 Total: -11.74 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.91 kcal Total: -66.03 5.07 -60.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228843590.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.748 kcal (2) G-P(sol) polarization free energy of solvation -66.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.960 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds