Wall clock time and date at job start Mon Mar 30 2020 01:12:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50696 * 120.00406 * 2 1 4 4 C 1.50697 * 109.47585 * 125.00032 * 3 2 1 5 5 C 1.38164 * 120.02493 * 265.00262 * 4 3 2 6 6 C 1.38252 * 120.05367 * 179.97438 * 5 4 3 7 7 C 1.38285 * 120.10943 * 0.02562 * 6 5 4 8 8 C 1.38121 * 120.05793 * 0.02562 * 7 6 5 9 9 C 1.38710 * 120.02664 * 84.72184 * 4 3 2 10 10 O 1.35894 * 120.05597 * 0.02562 * 9 4 3 11 11 C 1.42900 * 116.99879 * 185.94868 * 10 9 4 12 12 C 1.53938 * 113.73322 * 255.85036 * 11 10 9 13 13 N 1.48187 * 86.10048 * 221.95687 * 12 11 10 14 14 C 1.46898 * 111.07068 * 137.52269 * 13 12 11 15 15 C 1.50701 * 109.47271 * 70.56482 * 14 13 12 16 16 H 1.08004 * 119.99856 * 0.02562 * 15 14 13 17 17 C 1.37874 * 120.00066 * 179.97438 * 15 14 13 18 18 N 1.31520 * 119.99779 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 119.99971 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.47055 * 90.00723 * 19 17 15 21 21 H 1.48504 * 109.47409 * 210.00077 * 19 17 15 22 22 H 1.48496 * 109.47601 * 330.00383 * 19 17 15 23 23 C 1.47955 * 90.80229 * 24.59948 * 13 12 11 24 24 H 1.07998 * 120.00217 * 180.02562 * 1 2 3 25 25 H 1.07995 * 119.99450 * 359.72473 * 1 2 3 26 26 H 1.08006 * 119.99736 * 179.97438 * 2 1 3 27 27 H 1.09007 * 109.47045 * 245.00221 * 3 2 1 28 28 H 1.09000 * 109.46806 * 4.99891 * 3 2 1 29 29 H 1.08000 * 119.97786 * 359.97438 * 5 4 3 30 30 H 1.08004 * 119.94356 * 179.97438 * 6 5 4 31 31 H 1.07996 * 119.96973 * 180.02562 * 7 6 5 32 32 H 1.08002 * 120.02715 * 179.97438 * 8 7 6 33 33 H 1.09002 * 112.94034 * 27.41928 * 11 10 9 34 34 H 1.08997 * 113.75980 * 336.23825 * 12 11 10 35 35 H 1.09005 * 113.75755 * 107.60350 * 12 11 10 36 36 H 1.08999 * 109.47018 * 190.56561 * 14 13 12 37 37 H 1.09000 * 109.46741 * 310.56497 * 14 13 12 38 38 H 0.97006 * 119.99630 * 180.02562 * 18 17 15 39 39 H 1.09000 * 113.76151 * 221.08586 * 23 13 12 40 40 H 1.08995 * 113.76001 * 89.71797 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 3.0206 1.3326 1.1638 5 6 2.6461 1.9285 2.3528 6 6 3.5234 1.9537 3.4210 7 6 4.7775 1.3833 3.3023 8 6 5.1570 0.7874 2.1155 9 6 4.2759 0.7547 1.0441 10 8 4.6445 0.1635 -0.1226 11 6 5.8970 -0.5244 -0.1339 12 6 7.0196 0.2444 -0.8539 13 7 7.3989 -1.0619 -1.4418 14 6 7.7244 -0.9247 -2.8677 15 6 9.0282 -0.1836 -3.0164 16 1 9.5619 0.1515 -2.1393 17 6 9.5402 0.0656 -4.2720 18 7 8.8905 -0.3430 -5.3401 19 14 11.1559 0.9847 -4.4563 20 1 12.2797 0.0140 -4.4626 21 1 11.1507 1.7441 -5.7325 22 1 11.3219 1.9268 -3.3205 23 6 6.0207 -1.5679 -1.2588 24 1 -0.5400 -0.9353 0.0004 25 1 -0.5399 0.9353 0.0045 26 1 1.8500 -0.9354 0.0004 27 1 2.6214 1.4025 -0.9315 28 1 1.3587 2.1316 0.0895 29 1 1.6673 2.3749 2.4478 30 1 3.2290 2.4203 4.3495 31 1 5.4609 1.4039 4.1384 32 1 6.1368 0.3425 2.0232 33 1 6.1834 -0.9017 0.8478 34 1 6.6579 0.9668 -1.5855 35 1 7.7700 0.6587 -0.1804 36 1 7.8155 -1.9138 -3.3164 37 1 6.9318 -0.3697 -3.3695 38 1 9.2510 -0.1680 -6.2235 39 1 5.9744 -2.5990 -0.9084 40 1 5.3662 -1.3767 -2.1091 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001228847836.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:49 Heat of formation + Delta-G solvation = 40.093738 kcal Electronic energy + Delta-G solvation = -20348.571526 eV Core-core repulsion = 17323.147831 eV Total energy + Delta-G solvation = -3025.423695 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.46575 -38.90624 -36.60064 -35.18749 -32.88692 -31.29942 -30.06404 -29.05442 -26.38415 -25.81456 -25.18031 -22.98782 -21.72954 -21.12507 -19.83183 -19.30595 -18.10359 -16.50113 -16.05489 -15.95747 -15.33803 -15.01646 -14.71326 -14.63172 -14.21496 -13.84960 -13.68313 -13.19944 -13.11425 -12.47405 -12.20620 -12.03879 -11.97582 -11.80395 -11.62156 -11.50994 -11.19324 -10.96355 -10.78080 -10.68325 -10.30073 -10.14559 -9.73830 -9.38830 -9.21391 -8.86442 -8.53089 -8.05906 -7.90770 -6.08456 -4.10801 1.28228 1.44780 2.26482 3.29439 3.33685 3.35479 3.39508 3.74175 4.38719 4.63727 4.75950 4.77018 4.82331 4.96890 5.03862 5.14674 5.15441 5.27074 5.27907 5.34901 5.52984 5.61393 5.76877 5.82452 5.90097 6.00564 6.03531 6.07990 6.28051 6.32561 6.38571 6.44714 6.50111 6.56560 6.57450 6.73577 6.83674 7.15751 7.56727 7.60249 7.81175 8.03671 8.34975 8.95964 9.53897 11.02792 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.022570 B = 0.003891 C = 0.003583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.279966 B = 7193.563281 C = 7812.795788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.132 4.132 3 C -0.047 4.047 4 C -0.117 4.117 5 C -0.080 4.080 6 C -0.164 4.164 7 C -0.083 4.083 8 C -0.207 4.207 9 C 0.143 3.857 10 O -0.301 6.301 11 C 0.043 3.957 12 C 0.008 3.992 13 N -0.473 5.473 14 C 0.163 3.837 15 C -0.513 4.513 16 H 0.062 0.938 17 C 0.057 3.943 18 N -0.897 5.897 19 Si 0.899 3.101 20 H -0.279 1.279 21 H -0.286 1.286 22 H -0.273 1.273 23 C 0.008 3.992 24 H 0.095 0.905 25 H 0.094 0.906 26 H 0.109 0.891 27 H 0.088 0.912 28 H 0.072 0.928 29 H 0.124 0.876 30 H 0.120 0.880 31 H 0.122 0.878 32 H 0.132 0.868 33 H 0.101 0.899 34 H 0.078 0.922 35 H 0.082 0.918 36 H 0.035 0.965 37 H 0.002 0.998 38 H 0.262 0.738 39 H 0.087 0.913 40 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.091 2.889 15.165 20.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.150 4.150 3 C -0.084 4.084 4 C -0.117 4.117 5 C -0.098 4.098 6 C -0.182 4.182 7 C -0.102 4.102 8 C -0.226 4.226 9 C 0.096 3.904 10 O -0.213 6.213 11 C -0.013 4.013 12 C -0.121 4.121 13 N -0.198 5.198 14 C 0.037 3.963 15 C -0.551 4.551 16 H 0.080 0.920 17 C -0.145 4.145 18 N -0.536 5.536 19 Si 0.727 3.273 20 H -0.205 1.205 21 H -0.212 1.212 22 H -0.198 1.198 23 C -0.121 4.121 24 H 0.113 0.887 25 H 0.112 0.888 26 H 0.127 0.873 27 H 0.106 0.894 28 H 0.091 0.909 29 H 0.142 0.858 30 H 0.138 0.862 31 H 0.140 0.860 32 H 0.149 0.851 33 H 0.119 0.881 34 H 0.096 0.904 35 H 0.100 0.900 36 H 0.053 0.947 37 H 0.019 0.981 38 H 0.072 0.928 39 H 0.105 0.895 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -13.615 2.511 15.004 20.415 hybrid contribution 0.528 0.825 -0.556 1.126 sum -13.087 3.336 14.448 19.778 Atomic orbital electron populations 1.23769 0.95774 1.01573 1.03169 1.22896 0.95650 0.98449 0.97988 1.19587 0.96411 0.95545 0.96871 1.19110 0.92951 1.03069 0.96597 1.20825 0.99201 0.98001 0.91795 1.20969 0.94706 1.03501 0.99068 1.20924 0.96166 0.96276 0.96785 1.21351 1.00769 1.06203 0.94239 1.18908 0.92752 0.93060 0.85631 1.86202 1.39004 1.65507 1.30589 1.24947 0.81812 0.94425 1.00158 1.24261 0.94907 0.94605 0.98339 1.68617 1.18074 1.12645 1.20491 1.20217 0.96589 0.97570 0.81902 1.21072 1.05857 1.35822 0.92377 0.91971 1.24988 0.97729 0.95985 0.95766 1.69960 1.38953 1.46709 0.97965 0.86474 0.83560 0.79793 0.77466 1.20536 1.21205 1.19824 1.24138 0.93328 0.98083 0.96504 0.88658 0.88791 0.87299 0.89376 0.90904 0.85827 0.86241 0.86042 0.85051 0.88148 0.90420 0.89966 0.94717 0.98054 0.92804 0.89463 0.90770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.99 14.32 29.01 0.42 -1.58 16 2 C -0.13 -1.49 9.50 -36.03 -0.34 -1.83 16 3 C -0.05 -0.55 5.51 -29.04 -0.16 -0.71 16 4 C -0.12 -1.48 5.13 -104.48 -0.54 -2.02 16 5 C -0.08 -0.88 9.68 -39.60 -0.38 -1.26 16 6 C -0.16 -1.71 10.04 -39.56 -0.40 -2.11 16 7 C -0.08 -0.93 10.04 -39.61 -0.40 -1.33 16 8 C -0.21 -2.68 9.01 -39.43 -0.36 -3.04 16 9 C 0.14 2.03 6.65 -39.21 -0.26 1.77 16 10 O -0.30 -4.75 9.30 -19.41 -0.18 -4.93 16 11 C 0.04 0.69 3.77 -25.80 -0.10 0.59 16 12 C 0.01 0.15 7.32 -2.63 -0.02 0.13 16 13 N -0.47 -10.20 6.25 -239.77 -1.50 -11.70 16 14 C 0.16 4.27 4.58 -4.98 -0.02 4.24 16 15 C -0.51 -14.49 8.84 -34.44 -0.30 -14.80 16 16 H 0.06 1.74 7.80 -52.48 -0.41 1.33 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 18 N -0.90 -26.68 13.29 55.43 0.74 -25.94 16 19 Si 0.90 21.68 29.54 -169.99 -5.02 16.66 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 22 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 23 C 0.01 0.15 7.81 -2.76 -0.02 0.13 16 24 H 0.10 0.82 8.06 -52.49 -0.42 0.40 16 25 H 0.09 0.80 7.84 -52.49 -0.41 0.38 16 26 H 0.11 1.32 8.06 -52.48 -0.42 0.89 16 27 H 0.09 1.15 7.70 -51.93 -0.40 0.75 16 28 H 0.07 0.71 7.70 -51.93 -0.40 0.31 16 29 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 30 H 0.12 0.96 8.06 -52.48 -0.42 0.53 16 31 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 32 H 0.13 1.63 5.98 -52.49 -0.31 1.32 16 33 H 0.10 1.44 6.11 -51.93 -0.32 1.12 16 34 H 0.08 1.62 7.79 -51.93 -0.40 1.21 16 35 H 0.08 1.50 8.14 -51.93 -0.42 1.07 16 36 H 0.03 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.00 0.04 7.70 -51.93 -0.40 -0.35 16 38 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 39 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 40 H 0.07 1.36 7.79 -51.93 -0.40 0.96 16 LS Contribution 336.79 15.07 5.08 5.08 Total: -1.00 -30.25 336.79 -9.85 -40.10 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: -5.98 Total: 1.03 kcal Atomic # 6 Polarization: -17.30 SS G_CDS: -2.98 Total: -20.28 kcal Atomic # 7 Polarization: -36.88 SS G_CDS: -0.76 Total: -37.64 kcal Atomic # 8 Polarization: -4.75 SS G_CDS: -0.18 Total: -4.93 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -30.25 -9.85 -40.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228847836.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.191 kcal (2) G-P(sol) polarization free energy of solvation -30.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.097 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds