Wall clock time and date at job start Mon Mar 30 2020 01:12:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50696 * 120.00406 * 2 1 4 4 C 1.50697 * 109.47585 * 125.00032 * 3 2 1 5 5 C 1.38164 * 120.02493 * 265.00262 * 4 3 2 6 6 C 1.38252 * 120.05367 * 179.97438 * 5 4 3 7 7 C 1.38285 * 120.10943 * 0.02562 * 6 5 4 8 8 C 1.38121 * 120.05793 * 0.02562 * 7 6 5 9 9 C 1.38710 * 120.02664 * 84.72184 * 4 3 2 10 10 O 1.35894 * 120.05597 * 0.02562 * 9 4 3 11 11 C 1.42900 * 116.99879 * 185.94868 * 10 9 4 12 12 C 1.53938 * 113.73322 * 255.85036 * 11 10 9 13 13 N 1.48187 * 86.10048 * 221.95687 * 12 11 10 14 14 C 1.46898 * 111.07068 * 137.52269 * 13 12 11 15 15 C 1.50701 * 109.47271 * 70.56482 * 14 13 12 16 16 H 1.08004 * 119.99856 * 0.02562 * 15 14 13 17 17 C 1.37874 * 120.00066 * 179.97438 * 15 14 13 18 18 N 1.31520 * 119.99779 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 119.99971 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.47055 * 90.00723 * 19 17 15 21 21 H 1.48504 * 109.47409 * 210.00077 * 19 17 15 22 22 H 1.48496 * 109.47601 * 330.00383 * 19 17 15 23 23 C 1.47955 * 90.80229 * 24.59948 * 13 12 11 24 24 H 1.07998 * 120.00217 * 180.02562 * 1 2 3 25 25 H 1.07995 * 119.99450 * 359.72473 * 1 2 3 26 26 H 1.08006 * 119.99736 * 179.97438 * 2 1 3 27 27 H 1.09007 * 109.47045 * 245.00221 * 3 2 1 28 28 H 1.09000 * 109.46806 * 4.99891 * 3 2 1 29 29 H 1.08000 * 119.97786 * 359.97438 * 5 4 3 30 30 H 1.08004 * 119.94356 * 179.97438 * 6 5 4 31 31 H 1.07996 * 119.96973 * 180.02562 * 7 6 5 32 32 H 1.08002 * 120.02715 * 179.97438 * 8 7 6 33 33 H 1.09002 * 112.94034 * 27.41928 * 11 10 9 34 34 H 1.08997 * 113.75980 * 336.23825 * 12 11 10 35 35 H 1.09005 * 113.75755 * 107.60350 * 12 11 10 36 36 H 1.08999 * 109.47018 * 190.56561 * 14 13 12 37 37 H 1.09000 * 109.46741 * 310.56497 * 14 13 12 38 38 H 0.97006 * 119.99630 * 180.02562 * 18 17 15 39 39 H 1.09000 * 113.76151 * 221.08586 * 23 13 12 40 40 H 1.08995 * 113.76001 * 89.71797 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 3.0206 1.3326 1.1638 5 6 2.6461 1.9285 2.3528 6 6 3.5234 1.9537 3.4210 7 6 4.7775 1.3833 3.3023 8 6 5.1570 0.7874 2.1155 9 6 4.2759 0.7547 1.0441 10 8 4.6445 0.1635 -0.1226 11 6 5.8970 -0.5244 -0.1339 12 6 7.0196 0.2444 -0.8539 13 7 7.3989 -1.0619 -1.4418 14 6 7.7244 -0.9247 -2.8677 15 6 9.0282 -0.1836 -3.0164 16 1 9.5619 0.1515 -2.1393 17 6 9.5402 0.0656 -4.2720 18 7 8.8905 -0.3430 -5.3401 19 14 11.1559 0.9847 -4.4563 20 1 12.2797 0.0140 -4.4626 21 1 11.1507 1.7441 -5.7325 22 1 11.3219 1.9268 -3.3205 23 6 6.0207 -1.5679 -1.2588 24 1 -0.5400 -0.9353 0.0004 25 1 -0.5399 0.9353 0.0045 26 1 1.8500 -0.9354 0.0004 27 1 2.6214 1.4025 -0.9315 28 1 1.3587 2.1316 0.0895 29 1 1.6673 2.3749 2.4478 30 1 3.2290 2.4203 4.3495 31 1 5.4609 1.4039 4.1384 32 1 6.1368 0.3425 2.0232 33 1 6.1834 -0.9017 0.8478 34 1 6.6579 0.9668 -1.5855 35 1 7.7700 0.6587 -0.1804 36 1 7.8155 -1.9138 -3.3164 37 1 6.9318 -0.3697 -3.3695 38 1 9.2510 -0.1680 -6.2235 39 1 5.9744 -2.5990 -0.9084 40 1 5.3662 -1.3767 -2.1091 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001228847836.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:48 Heat of formation + Delta-G solvation = 21.803714 kcal Electronic energy + Delta-G solvation = -20349.364641 eV Core-core repulsion = 17323.147831 eV Total energy + Delta-G solvation = -3026.216810 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.66165 -40.18852 -37.81853 -36.03827 -35.02305 -32.19758 -31.35760 -30.57415 -27.51351 -27.27734 -26.84047 -24.43382 -22.66588 -22.63488 -20.77802 -20.64584 -19.23204 -18.58749 -17.36670 -16.89813 -16.66755 -16.45271 -16.22598 -15.66027 -15.43443 -15.11861 -14.96126 -14.45078 -14.14629 -13.99704 -13.78870 -13.69171 -13.24342 -13.11033 -12.77838 -12.75313 -12.57812 -12.40790 -12.26655 -12.01801 -11.74644 -11.56105 -11.47586 -11.21238 -10.68697 -10.22185 -9.74970 -9.74421 -9.04141 -8.27322 -6.38647 0.39898 0.52181 1.38269 1.40072 1.44508 1.51189 2.16012 2.37192 2.83738 3.05686 3.13782 3.37716 3.78046 3.89383 3.91835 4.10364 4.15071 4.25567 4.33914 4.43644 4.46990 4.47933 4.62294 4.67619 4.70990 4.78351 4.83079 4.87153 4.95513 5.06576 5.09822 5.16432 5.44732 5.45623 5.55059 5.63095 5.69728 5.75818 5.89997 5.94831 6.01981 6.28162 6.50809 6.75475 7.31458 8.84677 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.022570 B = 0.003891 C = 0.003583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.279966 B = 7193.563281 C = 7812.795788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.156 4.156 3 C -0.044 4.044 4 C -0.127 4.127 5 C -0.082 4.082 6 C -0.158 4.158 7 C -0.088 4.088 8 C -0.218 4.218 9 C 0.109 3.891 10 O -0.315 6.315 11 C 0.071 3.929 12 C 0.004 3.996 13 N -0.484 5.484 14 C 0.179 3.821 15 C -0.532 4.532 16 H 0.062 0.938 17 C 0.003 3.997 18 N -0.933 5.933 19 Si 0.972 3.028 20 H -0.270 1.270 21 H -0.280 1.280 22 H -0.264 1.264 23 C 0.006 3.994 24 H 0.106 0.894 25 H 0.111 0.889 26 H 0.093 0.907 27 H 0.063 0.937 28 H 0.093 0.907 29 H 0.150 0.850 30 H 0.150 0.850 31 H 0.146 0.854 32 H 0.132 0.868 33 H 0.125 0.875 34 H 0.053 0.947 35 H 0.092 0.908 36 H 0.007 0.993 37 H -0.027 1.027 38 H 0.266 0.734 39 H 0.112 0.888 40 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.658 3.984 17.602 23.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.174 4.174 3 C -0.081 4.081 4 C -0.128 4.128 5 C -0.100 4.100 6 C -0.176 4.176 7 C -0.106 4.106 8 C -0.237 4.237 9 C 0.064 3.936 10 O -0.228 6.228 11 C 0.015 3.985 12 C -0.125 4.125 13 N -0.208 5.208 14 C 0.052 3.948 15 C -0.570 4.570 16 H 0.080 0.920 17 C -0.195 4.195 18 N -0.573 5.573 19 Si 0.796 3.204 20 H -0.196 1.196 21 H -0.205 1.205 22 H -0.188 1.188 23 C -0.123 4.123 24 H 0.124 0.876 25 H 0.129 0.871 26 H 0.111 0.889 27 H 0.082 0.918 28 H 0.111 0.889 29 H 0.167 0.833 30 H 0.168 0.832 31 H 0.164 0.836 32 H 0.150 0.850 33 H 0.143 0.857 34 H 0.071 0.929 35 H 0.111 0.889 36 H 0.026 0.974 37 H -0.009 1.009 38 H 0.075 0.925 39 H 0.130 0.870 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -14.198 3.604 17.465 22.794 hybrid contribution 0.557 0.507 -1.227 1.439 sum -13.640 4.110 16.238 21.602 Atomic orbital electron populations 1.23987 0.95100 1.02889 1.00353 1.22805 0.96319 0.97694 1.00604 1.19554 0.96473 0.96513 0.95565 1.19384 0.92621 1.03100 0.97701 1.21173 1.00469 0.97297 0.91071 1.21391 0.94046 1.02169 0.99963 1.21268 0.97070 0.95543 0.96711 1.21490 1.00673 1.06811 0.94728 1.19223 0.94083 0.94780 0.85508 1.86166 1.38341 1.66147 1.32154 1.24544 0.81264 0.92522 1.00196 1.24251 0.96679 0.93444 0.98166 1.68497 1.20796 1.14362 1.17136 1.19860 0.95308 0.95215 0.84467 1.21393 1.06670 1.36265 0.92695 0.91994 1.25948 1.01589 0.96716 0.95286 1.70087 1.40839 1.47782 0.98565 0.85341 0.78726 0.78572 0.77755 1.19585 1.20542 1.18833 1.24198 0.90947 1.00083 0.97031 0.87611 0.87110 0.88923 0.91848 0.88894 0.83272 0.83197 0.83609 0.85005 0.85726 0.92894 0.88942 0.97446 1.00913 0.92491 0.86973 0.92058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.27 14.32 67.78 0.97 -2.30 16 2 C -0.16 -3.47 9.50 25.64 0.24 -3.23 16 3 C -0.04 -1.02 5.51 29.10 0.16 -0.86 16 4 C -0.13 -3.13 5.13 -19.77 -0.10 -3.23 16 5 C -0.08 -1.58 9.68 22.26 0.22 -1.37 16 6 C -0.16 -2.76 10.04 22.28 0.22 -2.53 16 7 C -0.09 -1.73 10.04 22.25 0.22 -1.50 16 8 C -0.22 -5.39 9.01 22.37 0.20 -5.19 16 9 C 0.11 3.08 6.65 22.51 0.15 3.23 16 10 O -0.31 -10.24 9.30 -92.36 -0.86 -11.10 16 11 C 0.07 2.31 3.77 31.24 0.12 2.43 16 12 C 0.00 0.15 7.32 86.37 0.63 0.78 16 13 N -0.48 -21.50 6.25 -915.69 -5.72 -27.22 16 14 C 0.18 9.81 4.58 85.56 0.39 10.21 16 15 C -0.53 -30.90 8.84 25.60 0.23 -30.68 16 16 H 0.06 3.52 7.80 -2.91 -0.02 3.50 16 17 C 0.00 0.18 5.46 84.65 0.46 0.64 16 18 N -0.93 -56.96 13.29 21.45 0.28 -56.68 16 19 Si 0.97 44.73 29.54 68.60 2.03 46.76 16 20 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 21 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 22 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 23 C 0.01 0.22 7.81 86.41 0.67 0.90 16 24 H 0.11 1.62 8.06 -2.91 -0.02 1.59 16 25 H 0.11 1.56 7.84 -2.91 -0.02 1.54 16 26 H 0.09 2.32 8.06 -2.91 -0.02 2.30 16 27 H 0.06 1.74 7.70 -2.38 -0.02 1.72 16 28 H 0.09 1.68 7.70 -2.39 -0.02 1.66 16 29 H 0.15 2.04 8.06 -2.91 -0.02 2.01 16 30 H 0.15 1.70 8.06 -2.91 -0.02 1.68 16 31 H 0.15 2.08 8.06 -2.91 -0.02 2.06 16 32 H 0.13 3.12 5.98 -2.91 -0.02 3.10 16 33 H 0.13 3.44 6.11 -2.39 -0.01 3.42 16 34 H 0.05 2.34 7.79 -2.39 -0.02 2.32 16 35 H 0.09 3.40 8.14 -2.38 -0.02 3.38 16 36 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 37 H -0.03 -1.59 7.70 -2.39 -0.02 -1.61 16 38 H 0.27 15.21 8.31 -92.70 -0.77 14.44 16 39 H 0.11 3.49 8.14 -2.39 -0.02 3.47 16 40 H 0.06 2.39 7.79 -2.39 -0.02 2.37 16 Total: -1.00 -67.18 336.79 1.53 -65.65 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: 1.00 Total: 15.30 kcal Atomic # 6 Polarization: -37.51 SS G_CDS: 4.79 Total: -32.71 kcal Atomic # 7 Polarization: -78.46 SS G_CDS: -5.44 Total: -83.90 kcal Atomic # 8 Polarization: -10.24 SS G_CDS: -0.86 Total: -11.10 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -67.18 1.53 -65.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228847836.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.456 kcal (2) G-P(sol) polarization free energy of solvation -67.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.652 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds