Wall clock time and date at job start Mon Mar 30 2020 01:12:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32591 * 1 3 3 C 1.50702 * 120.00112 * 2 1 4 4 C 1.47781 * 120.00044 * 179.97438 * 2 1 3 5 5 C 1.39576 * 120.07896 * 65.00553 * 4 2 1 6 6 C 1.37856 * 119.90926 * 180.02562 * 5 4 2 7 7 C 1.38866 * 120.08751 * 359.97438 * 6 5 4 8 8 O 1.35867 * 119.91468 * 179.97438 * 7 6 5 9 9 C 1.42893 * 116.99735 * 185.74066 * 8 7 6 10 10 C 1.53515 * 114.16678 * 156.80822 * 9 8 7 11 11 N 1.47482 * 87.93146 * 87.81715 * 10 9 8 12 12 C 1.46901 * 111.00039 * 138.70349 * 11 10 9 13 13 C 1.50705 * 109.46844 * 169.99777 * 12 11 10 14 14 H 1.07999 * 119.99917 * 0.02562 * 13 12 11 15 15 C 1.37876 * 119.99766 * 179.97438 * 13 12 11 16 16 N 1.31512 * 119.99945 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 119.99878 * 179.97438 * 15 13 12 18 18 H 1.48490 * 109.47200 * 270.00256 * 17 15 13 19 19 H 1.48502 * 109.46731 * 30.00769 * 17 15 13 20 20 H 1.48506 * 109.46780 * 149.99909 * 17 15 13 21 21 C 1.47483 * 87.83603 * 27.00931 * 11 10 9 22 22 C 1.38858 * 120.16738 * 0.25271 * 7 6 5 23 23 C 1.37850 * 120.08869 * 359.49163 * 22 7 6 24 24 H 1.07996 * 120.00054 * 180.02562 * 1 2 3 25 25 H 1.08003 * 119.99690 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.46695 * 269.99391 * 3 2 1 27 27 H 1.09000 * 109.47428 * 29.99611 * 3 2 1 28 28 H 1.09000 * 109.47225 * 149.99852 * 3 2 1 29 29 H 1.07994 * 120.04724 * 0.02562 * 5 4 2 30 30 H 1.08004 * 119.95872 * 179.97438 * 6 5 4 31 31 H 1.09002 * 113.25965 * 23.86349 * 9 8 7 32 32 H 1.08991 * 113.47748 * 333.04460 * 10 9 8 33 33 H 1.09001 * 113.47232 * 202.57623 * 10 9 8 34 34 H 1.08998 * 109.47297 * 49.99848 * 12 11 10 35 35 H 1.08996 * 109.47119 * 289.99383 * 12 11 10 36 36 H 0.97001 * 119.99846 * 179.97438 * 16 15 13 37 37 H 1.08998 * 113.47183 * 87.76119 * 21 11 10 38 38 H 1.08997 * 113.47398 * 218.22654 * 21 11 10 39 39 H 1.08006 * 119.95729 * 179.74546 * 22 7 6 40 40 H 1.08004 * 120.04463 * 180.25883 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3259 0.0000 0.0000 3 6 2.0794 1.3051 0.0000 4 6 2.0648 -1.2798 0.0006 5 6 1.9726 -2.1413 -1.0937 6 6 2.6630 -3.3345 -1.0893 7 6 3.4497 -3.6796 0.0018 8 8 4.1282 -4.8567 0.0027 9 6 4.8162 -5.2079 1.2048 10 6 5.0734 -6.7129 1.3649 11 7 6.3291 -6.5238 0.6148 12 6 7.4212 -7.3046 1.2111 13 6 8.6137 -7.2852 0.2897 14 1 8.5652 -6.7463 -0.6450 15 6 9.7669 -7.9545 0.6406 16 7 9.8260 -8.6103 1.7791 17 14 11.2448 -7.9311 -0.5017 18 1 11.1616 -9.0771 -1.4422 19 1 11.2566 -6.6601 -1.2696 20 1 12.4909 -8.0371 0.2990 21 6 6.3461 -5.1324 1.1036 22 6 3.5402 -2.8272 1.0943 23 6 2.8570 -1.6299 1.0951 24 1 -0.5400 -0.9353 0.0004 25 1 -0.5400 0.9354 -0.0004 26 1 2.2612 1.6196 -1.0277 27 1 1.4904 2.0648 0.5138 28 1 3.0319 1.1748 0.5139 29 1 1.3614 -1.8735 -1.9428 30 1 2.5919 -4.0019 -1.9354 31 1 4.4035 -4.7288 2.0927 32 1 4.3461 -7.3355 0.8442 33 1 5.2278 -7.0193 2.3996 34 1 7.0934 -8.3335 1.3593 35 1 7.6970 -6.8691 2.1714 36 1 10.6372 -9.0815 2.0257 37 1 6.8400 -5.0172 2.0684 38 1 6.6973 -4.4157 0.3613 39 1 4.1498 -3.1009 1.9428 40 1 2.9312 -0.9656 1.9434 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001229078423.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:52 Heat of formation + Delta-G solvation = 45.606265 kcal Electronic energy + Delta-G solvation = -19827.973316 eV Core-core repulsion = 16802.788662 eV Total energy + Delta-G solvation = -3025.184654 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.47959 -39.06316 -37.09502 -34.72822 -32.86527 -31.16918 -29.63958 -28.75938 -27.39388 -25.64606 -25.30044 -23.12103 -22.77329 -21.48175 -19.68955 -19.08002 -17.89223 -16.38219 -15.91785 -15.82843 -15.49189 -14.86174 -14.58258 -14.43015 -14.10633 -13.85348 -13.63148 -13.38831 -13.30104 -13.13020 -12.69682 -12.26409 -11.99086 -11.93459 -11.64593 -11.43884 -11.17363 -10.97258 -10.78448 -10.48826 -10.36577 -10.07896 -9.68790 -9.36634 -9.28408 -9.08315 -8.44557 -7.97361 -7.87419 -6.05065 -4.06028 1.20719 1.30472 2.01635 3.22918 3.32253 3.37704 3.42668 3.68388 4.41764 4.51801 4.64511 4.76277 4.81115 4.81734 4.87098 5.12944 5.25987 5.28623 5.30368 5.34378 5.40014 5.57330 5.59862 5.69126 5.80448 5.84882 5.94751 6.01149 6.08862 6.14284 6.29272 6.34438 6.38448 6.47433 6.57989 6.59053 6.76976 7.11594 7.58764 7.62468 7.84036 8.07625 8.43504 9.01801 9.58260 11.06078 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.036251 B = 0.002988 C = 0.002915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.208174 B = 9369.026836 C = 9602.509381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.078 4.078 3 C -0.117 4.117 4 C -0.105 4.105 5 C -0.068 4.068 6 C -0.155 4.155 7 C 0.142 3.858 8 O -0.275 6.275 9 C 0.043 3.957 10 C 0.000 4.000 11 N -0.456 5.456 12 C 0.156 3.844 13 C -0.504 4.504 14 H 0.064 0.936 15 C 0.053 3.947 16 N -0.901 5.901 17 Si 0.900 3.100 18 H -0.280 1.280 19 H -0.273 1.273 20 H -0.287 1.287 21 C -0.006 4.006 22 C -0.210 4.210 23 C -0.066 4.066 24 H 0.098 0.902 25 H 0.100 0.900 26 H 0.069 0.931 27 H 0.063 0.937 28 H 0.065 0.935 29 H 0.127 0.873 30 H 0.132 0.868 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.078 0.922 34 H 0.030 0.970 35 H 0.004 0.996 36 H 0.261 0.739 37 H 0.076 0.924 38 H 0.082 0.918 39 H 0.133 0.867 40 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.550 16.392 -0.422 24.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.078 4.078 3 C -0.173 4.173 4 C -0.106 4.106 5 C -0.086 4.086 6 C -0.173 4.173 7 C 0.096 3.904 8 O -0.187 6.187 9 C -0.013 4.013 10 C -0.129 4.129 11 N -0.179 5.179 12 C 0.030 3.970 13 C -0.542 4.542 14 H 0.082 0.918 15 C -0.147 4.147 16 N -0.541 5.541 17 Si 0.728 3.272 18 H -0.206 1.206 19 H -0.198 1.198 20 H -0.213 1.213 21 C -0.135 4.135 22 C -0.229 4.229 23 C -0.084 4.084 24 H 0.117 0.883 25 H 0.119 0.881 26 H 0.087 0.913 27 H 0.082 0.918 28 H 0.084 0.916 29 H 0.144 0.856 30 H 0.150 0.850 31 H 0.104 0.896 32 H 0.103 0.897 33 H 0.096 0.904 34 H 0.048 0.952 35 H 0.022 0.978 36 H 0.071 0.929 37 H 0.094 0.906 38 H 0.100 0.900 39 H 0.150 0.850 40 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -17.316 15.944 -1.183 23.568 hybrid contribution 1.068 0.004 0.612 1.230 sum -16.249 15.948 -0.571 22.775 Atomic orbital electron populations 1.24099 0.94668 1.01871 1.02044 1.20460 0.94352 0.93207 0.99824 1.20863 1.00256 0.93912 1.02306 1.18782 1.01087 0.95104 0.95590 1.20997 0.97779 0.92515 0.97309 1.20386 0.99881 0.98530 0.98522 1.19254 0.91166 0.85859 0.94151 1.86185 1.61691 1.34190 1.36667 1.23725 0.93546 0.98229 0.85847 1.24004 0.96467 0.93470 0.98977 1.69095 1.02665 1.01904 1.44228 1.20311 0.89200 0.93597 0.93930 1.21098 0.96421 1.31584 1.05132 0.91819 1.25008 0.98910 0.95407 0.95423 1.69952 1.28277 1.33770 1.22092 0.86461 0.81663 0.78565 0.80541 1.20567 1.19800 1.21288 1.24247 0.92894 0.95831 1.00558 1.21261 1.05519 0.96441 0.99679 1.20939 0.94576 0.95528 0.97339 0.88317 0.88131 0.91251 0.91768 0.91631 0.85555 0.85002 0.89617 0.89681 0.90418 0.95157 0.97826 0.92905 0.90572 0.89961 0.84971 0.85944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.53 13.95 28.83 0.40 -1.12 16 2 C -0.08 -0.71 5.44 -102.62 -0.56 -1.27 16 3 C -0.12 -0.87 10.02 36.01 0.36 -0.51 16 4 C -0.11 -1.15 5.31 -105.00 -0.56 -1.71 16 5 C -0.07 -0.76 9.70 -39.22 -0.38 -1.14 16 6 C -0.15 -1.98 9.97 -39.49 -0.39 -2.38 16 7 C 0.14 2.04 6.68 -39.12 -0.26 1.78 16 8 O -0.28 -4.61 10.19 -19.32 -0.20 -4.80 16 9 C 0.04 0.69 4.06 -26.20 -0.11 0.58 16 10 C 0.00 0.00 7.52 -7.54 -0.06 -0.05 16 11 N -0.46 -10.18 6.32 -246.09 -1.55 -11.73 16 12 C 0.16 4.09 4.57 -4.97 -0.02 4.06 16 13 C -0.50 -14.59 9.39 -34.44 -0.32 -14.91 16 14 H 0.06 1.86 7.81 -52.49 -0.41 1.45 16 15 C 0.05 1.54 5.46 -17.82 -0.10 1.45 16 16 N -0.90 -26.93 13.29 55.43 0.74 -26.20 16 17 Si 0.90 22.04 29.54 -169.99 -5.02 17.02 16 18 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 19 H -0.27 -6.60 7.11 56.52 0.40 -6.19 16 20 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 21 C -0.01 -0.11 7.56 -7.54 -0.06 -0.16 16 22 C -0.21 -2.65 9.01 -39.49 -0.36 -3.01 16 23 C -0.07 -0.74 9.68 -39.22 -0.38 -1.12 16 24 H 0.10 0.80 8.05 -52.49 -0.42 0.38 16 25 H 0.10 0.64 8.05 -52.48 -0.42 0.22 16 26 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.39 8.07 -51.93 -0.42 -0.03 16 28 H 0.06 0.50 8.03 -51.93 -0.42 0.08 16 29 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 30 H 0.13 1.58 8.06 -52.48 -0.42 1.15 16 31 H 0.09 1.11 5.88 -51.93 -0.31 0.81 16 32 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 33 H 0.08 1.29 7.91 -51.93 -0.41 0.87 16 34 H 0.03 0.85 8.08 -51.93 -0.42 0.43 16 35 H 0.00 0.11 7.30 -51.93 -0.38 -0.27 16 36 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 37 H 0.08 1.38 7.42 -51.93 -0.39 1.00 16 38 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 39 H 0.13 1.52 5.86 -52.48 -0.31 1.21 16 40 H 0.12 1.13 8.06 -52.48 -0.42 0.71 16 LS Contribution 338.34 15.07 5.10 5.10 Total: -1.00 -31.47 338.34 -9.69 -41.17 By element: Atomic # 1 Polarization: 4.93 SS G_CDS: -5.97 Total: -1.04 kcal Atomic # 6 Polarization: -16.72 SS G_CDS: -2.79 Total: -19.51 kcal Atomic # 7 Polarization: -37.11 SS G_CDS: -0.82 Total: -37.93 kcal Atomic # 8 Polarization: -4.61 SS G_CDS: -0.20 Total: -4.80 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.47 -9.69 -41.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229078423.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.773 kcal (2) G-P(sol) polarization free energy of solvation -31.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.167 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds