Wall clock time and date at job start Mon Mar 30 2020 01:12:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32591 * 1 3 3 C 1.50702 * 120.00112 * 2 1 4 4 C 1.47781 * 120.00044 * 179.97438 * 2 1 3 5 5 C 1.39576 * 120.07896 * 65.00553 * 4 2 1 6 6 C 1.37856 * 119.90926 * 180.02562 * 5 4 2 7 7 C 1.38866 * 120.08751 * 359.97438 * 6 5 4 8 8 O 1.35867 * 119.91468 * 179.97438 * 7 6 5 9 9 C 1.42893 * 116.99735 * 185.74066 * 8 7 6 10 10 C 1.53515 * 114.16678 * 156.80822 * 9 8 7 11 11 N 1.47482 * 87.93146 * 87.81715 * 10 9 8 12 12 C 1.46901 * 111.00039 * 138.70349 * 11 10 9 13 13 C 1.50705 * 109.46844 * 169.99777 * 12 11 10 14 14 H 1.07999 * 119.99917 * 0.02562 * 13 12 11 15 15 C 1.37876 * 119.99766 * 179.97438 * 13 12 11 16 16 N 1.31512 * 119.99945 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 119.99878 * 179.97438 * 15 13 12 18 18 H 1.48490 * 109.47200 * 270.00256 * 17 15 13 19 19 H 1.48502 * 109.46731 * 30.00769 * 17 15 13 20 20 H 1.48506 * 109.46780 * 149.99909 * 17 15 13 21 21 C 1.47483 * 87.83603 * 27.00931 * 11 10 9 22 22 C 1.38858 * 120.16738 * 0.25271 * 7 6 5 23 23 C 1.37850 * 120.08869 * 359.49163 * 22 7 6 24 24 H 1.07996 * 120.00054 * 180.02562 * 1 2 3 25 25 H 1.08003 * 119.99690 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.46695 * 269.99391 * 3 2 1 27 27 H 1.09000 * 109.47428 * 29.99611 * 3 2 1 28 28 H 1.09000 * 109.47225 * 149.99852 * 3 2 1 29 29 H 1.07994 * 120.04724 * 0.02562 * 5 4 2 30 30 H 1.08004 * 119.95872 * 179.97438 * 6 5 4 31 31 H 1.09002 * 113.25965 * 23.86349 * 9 8 7 32 32 H 1.08991 * 113.47748 * 333.04460 * 10 9 8 33 33 H 1.09001 * 113.47232 * 202.57623 * 10 9 8 34 34 H 1.08998 * 109.47297 * 49.99848 * 12 11 10 35 35 H 1.08996 * 109.47119 * 289.99383 * 12 11 10 36 36 H 0.97001 * 119.99846 * 179.97438 * 16 15 13 37 37 H 1.08998 * 113.47183 * 87.76119 * 21 11 10 38 38 H 1.08997 * 113.47398 * 218.22654 * 21 11 10 39 39 H 1.08006 * 119.95729 * 179.74546 * 22 7 6 40 40 H 1.08004 * 120.04463 * 180.25883 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3259 0.0000 0.0000 3 6 2.0794 1.3051 0.0000 4 6 2.0648 -1.2798 0.0006 5 6 1.9726 -2.1413 -1.0937 6 6 2.6630 -3.3345 -1.0893 7 6 3.4497 -3.6796 0.0018 8 8 4.1282 -4.8567 0.0027 9 6 4.8162 -5.2079 1.2048 10 6 5.0734 -6.7129 1.3649 11 7 6.3291 -6.5238 0.6148 12 6 7.4212 -7.3046 1.2111 13 6 8.6137 -7.2852 0.2897 14 1 8.5652 -6.7463 -0.6450 15 6 9.7669 -7.9545 0.6406 16 7 9.8260 -8.6103 1.7791 17 14 11.2448 -7.9311 -0.5017 18 1 11.1616 -9.0771 -1.4422 19 1 11.2566 -6.6601 -1.2696 20 1 12.4909 -8.0371 0.2990 21 6 6.3461 -5.1324 1.1036 22 6 3.5402 -2.8272 1.0943 23 6 2.8570 -1.6299 1.0951 24 1 -0.5400 -0.9353 0.0004 25 1 -0.5400 0.9354 -0.0004 26 1 2.2612 1.6196 -1.0277 27 1 1.4904 2.0648 0.5138 28 1 3.0319 1.1748 0.5139 29 1 1.3614 -1.8735 -1.9428 30 1 2.5919 -4.0019 -1.9354 31 1 4.4035 -4.7288 2.0927 32 1 4.3461 -7.3355 0.8442 33 1 5.2278 -7.0193 2.3996 34 1 7.0934 -8.3335 1.3593 35 1 7.6970 -6.8691 2.1714 36 1 10.6372 -9.0815 2.0257 37 1 6.8400 -5.0172 2.0684 38 1 6.6973 -4.4157 0.3613 39 1 4.1498 -3.1009 1.9428 40 1 2.9312 -0.9656 1.9434 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001229078423.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:51 Heat of formation + Delta-G solvation = 26.075484 kcal Electronic energy + Delta-G solvation = -19828.820234 eV Core-core repulsion = 16802.788662 eV Total energy + Delta-G solvation = -3026.031572 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.73032 -40.23221 -38.24311 -35.56600 -34.98404 -32.11763 -31.26757 -29.87485 -27.98136 -27.40692 -26.87390 -24.44758 -23.69383 -23.12484 -20.94130 -19.89278 -19.05618 -18.55023 -17.22090 -16.93663 -16.59398 -16.41753 -15.88862 -15.76333 -15.19217 -15.09982 -14.68023 -14.53130 -14.38833 -14.04241 -13.87246 -13.62070 -13.60186 -13.08836 -13.01852 -12.70549 -12.51582 -12.37771 -12.26644 -11.92720 -11.83800 -11.49584 -11.44624 -11.25734 -10.64168 -10.05468 -9.99009 -9.62641 -8.93642 -8.25698 -6.35700 0.30030 0.39517 1.33759 1.37738 1.39401 1.50925 2.06597 2.37353 2.75423 3.06265 3.29617 3.31529 3.72692 3.80821 3.88562 4.03093 4.17669 4.28554 4.41159 4.41892 4.47685 4.58629 4.59971 4.66736 4.72782 4.82397 4.86974 4.90430 4.98607 5.03229 5.09039 5.17079 5.25161 5.39080 5.54428 5.54978 5.73244 5.75183 5.84711 5.94614 6.04948 6.40919 6.50714 6.77953 7.33801 8.85253 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.036251 B = 0.002988 C = 0.002915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.208174 B = 9369.026836 C = 9602.509381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.097 4.097 3 C -0.115 4.115 4 C -0.101 4.101 5 C -0.070 4.070 6 C -0.164 4.164 7 C 0.111 3.889 8 O -0.300 6.300 9 C 0.070 3.930 10 C -0.001 4.001 11 N -0.487 5.487 12 C 0.172 3.828 13 C -0.529 4.529 14 H 0.053 0.947 15 C 0.003 3.997 16 N -0.931 5.931 17 Si 0.969 3.031 18 H -0.273 1.273 19 H -0.268 1.268 20 H -0.276 1.276 21 C -0.009 4.009 22 C -0.213 4.213 23 C -0.070 4.070 24 H 0.096 0.904 25 H 0.120 0.880 26 H 0.072 0.928 27 H 0.079 0.921 28 H 0.060 0.940 29 H 0.146 0.854 30 H 0.132 0.868 31 H 0.123 0.877 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.004 0.996 35 H -0.011 1.011 36 H 0.266 0.734 37 H 0.082 0.918 38 H 0.072 0.928 39 H 0.142 0.858 40 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.521 18.374 -0.516 26.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.097 4.097 3 C -0.172 4.172 4 C -0.102 4.102 5 C -0.088 4.088 6 C -0.183 4.183 7 C 0.066 3.934 8 O -0.213 6.213 9 C 0.013 3.987 10 C -0.130 4.130 11 N -0.210 5.210 12 C 0.045 3.955 13 C -0.567 4.567 14 H 0.071 0.929 15 C -0.195 4.195 16 N -0.572 5.572 17 Si 0.793 3.207 18 H -0.198 1.198 19 H -0.193 1.193 20 H -0.202 1.202 21 C -0.138 4.138 22 C -0.231 4.231 23 C -0.088 4.088 24 H 0.114 0.886 25 H 0.138 0.862 26 H 0.090 0.910 27 H 0.098 0.902 28 H 0.080 0.920 29 H 0.164 0.836 30 H 0.150 0.850 31 H 0.140 0.860 32 H 0.106 0.894 33 H 0.109 0.891 34 H 0.022 0.978 35 H 0.007 0.993 36 H 0.075 0.925 37 H 0.100 0.900 38 H 0.090 0.910 39 H 0.159 0.841 40 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -18.311 17.940 -1.279 25.666 hybrid contribution 1.228 -0.525 0.624 1.474 sum -17.082 17.415 -0.655 24.404 Atomic orbital electron populations 1.24276 0.94344 1.02741 1.00147 1.20538 0.94756 0.92899 1.01465 1.20872 1.00136 0.93463 1.02704 1.19113 1.00291 0.95684 0.95077 1.21248 0.97538 0.91849 0.98154 1.20567 1.00070 0.99323 0.98342 1.19506 0.92503 0.85796 0.95639 1.86138 1.62375 1.35706 1.37074 1.23467 0.91478 0.96616 0.87148 1.24079 0.94253 0.95473 0.99226 1.68998 1.03071 1.03481 1.45419 1.19976 0.89934 0.92669 0.92959 1.21399 0.98010 1.32000 1.05291 0.92914 1.25896 1.01877 0.94701 0.97005 1.70055 1.29314 1.34193 1.23609 0.85386 0.77951 0.78794 0.78519 1.19814 1.19262 1.20156 1.24280 0.95731 0.93507 1.00321 1.21398 1.05682 0.96666 0.99373 1.21221 0.94143 0.95269 0.98170 0.88573 0.86196 0.90961 0.90224 0.92049 0.83584 0.84971 0.85994 0.89386 0.89062 0.97812 0.99326 0.92485 0.89978 0.90955 0.84088 0.83873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.34 13.95 66.66 0.93 -1.41 16 2 C -0.10 -1.50 5.44 -18.49 -0.10 -1.60 16 3 C -0.12 -1.42 10.02 71.24 0.71 -0.71 16 4 C -0.10 -2.01 5.31 -20.11 -0.11 -2.12 16 5 C -0.07 -1.45 9.70 22.50 0.22 -1.23 16 6 C -0.16 -4.13 9.97 22.33 0.22 -3.91 16 7 C 0.11 3.11 6.68 22.57 0.15 3.26 16 8 O -0.30 -10.00 10.19 -92.06 -0.94 -10.94 16 9 C 0.07 2.17 4.06 30.94 0.13 2.29 16 10 C 0.00 -0.05 7.52 83.58 0.63 0.58 16 11 N -0.49 -22.27 6.32 -932.89 -5.89 -28.17 16 12 C 0.17 9.33 4.57 85.56 0.39 9.72 16 13 C -0.53 -31.40 9.39 25.60 0.24 -31.16 16 14 H 0.05 3.17 7.81 -2.91 -0.02 3.14 16 15 C 0.00 0.20 5.46 84.65 0.46 0.66 16 16 N -0.93 -56.42 13.29 21.45 0.28 -56.13 16 17 Si 0.97 45.44 29.54 68.60 2.03 47.47 16 18 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 19 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 20 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 21 C -0.01 -0.34 7.56 83.58 0.63 0.29 16 22 C -0.21 -5.05 9.01 22.33 0.20 -4.85 16 23 C -0.07 -1.43 9.68 22.50 0.22 -1.21 16 24 H 0.10 1.31 8.05 -2.91 -0.02 1.28 16 25 H 0.12 1.11 8.05 -2.91 -0.02 1.09 16 26 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.08 0.73 8.07 -2.39 -0.02 0.71 16 28 H 0.06 0.80 8.03 -2.39 -0.02 0.78 16 29 H 0.15 2.35 8.06 -2.91 -0.02 2.33 16 30 H 0.13 3.18 8.06 -2.91 -0.02 3.15 16 31 H 0.12 2.91 5.88 -2.39 -0.01 2.90 16 32 H 0.09 3.04 8.14 -2.39 -0.02 3.03 16 33 H 0.09 3.00 7.91 -2.39 -0.02 2.98 16 34 H 0.00 0.22 8.08 -2.39 -0.02 0.20 16 35 H -0.01 -0.61 7.30 -2.39 -0.02 -0.63 16 36 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 37 H 0.08 2.99 7.42 -2.39 -0.02 2.98 16 38 H 0.07 2.84 8.14 -2.39 -0.02 2.82 16 39 H 0.14 2.97 5.86 -2.91 -0.02 2.95 16 40 H 0.14 2.26 8.06 -2.91 -0.02 2.24 16 Total: -1.00 -68.47 338.34 1.42 -67.05 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: 1.01 Total: 12.10 kcal Atomic # 6 Polarization: -36.31 SS G_CDS: 4.93 Total: -31.38 kcal Atomic # 7 Polarization: -78.69 SS G_CDS: -5.61 Total: -84.30 kcal Atomic # 8 Polarization: -10.00 SS G_CDS: -0.94 Total: -10.94 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Total: -68.47 1.42 -67.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229078423.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.124 kcal (2) G-P(sol) polarization free energy of solvation -68.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.049 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds