Wall clock time and date at job start Mon Mar 30 2020 01:13:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32599 * 1 3 3 C 1.50694 * 119.99782 * 2 1 4 4 C 1.47771 * 120.00226 * 180.02562 * 2 1 3 5 5 C 1.39579 * 120.08380 * 64.99707 * 4 2 1 6 6 C 1.37854 * 119.91701 * 179.97438 * 5 4 2 7 7 C 1.38868 * 120.08297 * 359.97438 * 6 5 4 8 8 O 1.35863 * 119.91605 * 180.02562 * 7 6 5 9 9 C 1.42900 * 117.00124 * 185.69142 * 8 7 6 10 10 H 1.09001 * 110.88171 * 32.42217 * 9 8 7 11 11 C 1.55154 * 111.00222 * 156.30451 * 9 8 7 12 12 C 1.54327 * 102.94156 * 153.57667 * 11 9 8 13 13 N 1.47018 * 107.27125 * 337.80787 * 12 11 9 14 14 C 1.36934 * 125.65146 * 178.96339 * 13 12 11 15 15 H 1.07995 * 120.00423 * 179.97438 * 14 13 12 16 16 C 1.38817 * 119.99859 * 359.97307 * 14 13 12 17 17 N 1.31625 * 119.99626 * 359.97438 * 16 14 13 18 18 Si 1.86792 * 120.00069 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47468 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47492 * 120.00058 * 18 16 14 21 21 H 1.48503 * 109.47282 * 239.99695 * 18 16 14 22 22 C 1.47427 * 108.70255 * 358.93935 * 13 12 11 23 23 C 1.38856 * 120.16825 * 0.05011 * 7 6 5 24 24 C 1.37857 * 120.09373 * 359.95200 * 23 7 6 25 25 H 1.07994 * 120.00444 * 359.97438 * 1 2 3 26 26 H 1.07999 * 119.99720 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47149 * 180.02562 * 3 2 1 28 28 H 1.09007 * 109.47240 * 299.99867 * 3 2 1 29 29 H 1.08999 * 109.47604 * 59.99845 * 3 2 1 30 30 H 1.08004 * 120.04462 * 359.70658 * 5 4 2 31 31 H 1.07993 * 119.96536 * 180.02562 * 6 5 4 32 32 H 1.09004 * 110.71982 * 271.94239 * 11 9 8 33 33 H 1.08995 * 110.71957 * 35.03814 * 11 9 8 34 34 H 1.08998 * 109.88084 * 97.22142 * 12 11 9 35 35 H 1.09000 * 109.88019 * 218.38852 * 12 11 9 36 36 H 0.97003 * 119.99486 * 180.02562 * 17 16 14 37 37 H 1.09000 * 110.36922 * 265.29032 * 22 13 12 38 38 H 1.09001 * 110.36732 * 142.96978 * 22 13 12 39 39 H 1.08005 * 119.95832 * 179.97438 * 23 7 6 40 40 H 1.07990 * 120.04946 * 180.02562 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3260 0.0000 0.0000 3 6 2.0794 1.3051 0.0000 4 6 2.0649 -1.2797 -0.0006 5 6 1.9727 -2.1404 -1.0955 6 6 2.6639 -3.3331 -1.0927 7 6 3.4516 -3.6785 -0.0024 8 8 4.1318 -4.8546 -0.0034 9 6 4.8218 -5.2060 1.1976 10 1 4.2918 -4.8322 2.0737 11 6 5.0337 -6.7403 1.2885 12 6 6.2925 -6.8635 2.1729 13 7 7.0157 -5.5867 2.0831 14 6 8.1780 -5.2799 2.7389 15 1 8.6333 -4.3098 2.6057 16 6 8.7710 -6.2160 3.5750 17 7 8.2157 -7.3983 3.7378 18 14 10.3561 -5.7974 4.4701 19 1 10.7719 -4.4153 4.1206 20 1 10.1372 -5.8931 5.9358 21 1 11.4199 -6.7512 4.0654 22 6 6.2825 -4.6914 1.1697 23 6 3.5455 -2.8251 1.0889 24 6 2.8573 -1.6307 1.0936 25 1 -0.5400 0.9352 0.0004 26 1 -0.5399 -0.9353 0.0004 27 1 3.1510 1.1060 -0.0005 28 1 1.8161 1.8767 -0.8900 29 1 1.8161 1.8767 0.8899 30 1 1.3571 -1.8743 -1.9422 31 1 2.5934 -3.9994 -1.9396 32 1 4.1790 -7.2202 1.7653 33 1 5.2106 -7.1644 0.3002 34 1 6.0023 -7.0533 3.2063 35 1 6.9239 -7.6737 1.8081 36 1 8.6299 -8.0523 4.3223 37 1 6.6903 -4.7616 0.1613 38 1 6.3293 -3.6629 1.5279 39 1 4.1588 -3.0973 1.9353 40 1 2.9311 -0.9673 1.9426 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001229078638.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:21 Heat of formation + Delta-G solvation = 28.666018 kcal Electronic energy + Delta-G solvation = -20303.963796 eV Core-core repulsion = 17278.044558 eV Total energy + Delta-G solvation = -3025.919238 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.09944 -38.20317 -36.39156 -34.66469 -32.31889 -31.01803 -29.56614 -28.80605 -27.34983 -27.32298 -24.61515 -22.77579 -22.64640 -20.34356 -20.10007 -19.01939 -18.02948 -17.02810 -15.77966 -15.63131 -15.05818 -14.70466 -14.55254 -14.01772 -13.94937 -13.85535 -13.50213 -13.30917 -12.91836 -12.72779 -12.38016 -12.21293 -11.91680 -11.82184 -11.56585 -11.09768 -10.98402 -10.91675 -10.73279 -10.34834 -10.21905 -10.05614 -9.87193 -9.73265 -9.28434 -8.96983 -8.66036 -7.86452 -6.91268 -5.76868 -3.11506 1.31291 1.41333 2.08922 3.37247 3.41521 3.45024 3.48306 3.80108 4.46486 4.60599 4.87186 4.94177 4.97446 5.20867 5.28119 5.34248 5.38356 5.41737 5.44611 5.53817 5.59502 5.65046 5.69052 5.75972 5.78621 6.05124 6.10705 6.20317 6.33717 6.40513 6.42411 6.48646 6.54642 6.58370 6.63922 6.68849 6.90494 7.48977 7.52739 7.69405 7.78193 8.18369 9.15339 9.74965 10.39464 11.34964 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.028293 B = 0.003660 C = 0.003349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.405050 B = 7649.187983 C = 8358.538819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.076 4.076 3 C -0.118 4.118 4 C -0.107 4.107 5 C -0.070 4.070 6 C -0.159 4.159 7 C 0.144 3.856 8 O -0.305 6.305 9 C 0.064 3.936 10 H 0.081 0.919 11 C -0.136 4.136 12 C 0.178 3.822 13 N -0.603 5.603 14 C -0.230 4.230 15 H 0.080 0.920 16 C -0.007 4.007 17 N -0.922 5.922 18 Si 0.914 3.086 19 H -0.279 1.279 20 H -0.290 1.290 21 H -0.290 1.290 22 C 0.121 3.879 23 C -0.206 4.206 24 C -0.065 4.065 25 H 0.100 0.900 26 H 0.098 0.902 27 H 0.064 0.936 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.125 0.875 31 H 0.129 0.871 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.051 0.949 35 H 0.050 0.950 36 H 0.253 0.747 37 H 0.030 0.970 38 H 0.043 0.957 39 H 0.136 0.864 40 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.408 11.561 -7.618 19.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.076 4.076 3 C -0.174 4.174 4 C -0.107 4.107 5 C -0.088 4.088 6 C -0.177 4.177 7 C 0.098 3.902 8 O -0.218 6.218 9 C 0.007 3.993 10 H 0.099 0.901 11 C -0.175 4.175 12 C 0.054 3.946 13 N -0.331 5.331 14 C -0.358 4.358 15 H 0.098 0.902 16 C -0.204 4.204 17 N -0.569 5.569 18 Si 0.745 3.255 19 H -0.204 1.204 20 H -0.217 1.217 21 H -0.217 1.217 22 C -0.006 4.006 23 C -0.225 4.225 24 C -0.083 4.083 25 H 0.118 0.882 26 H 0.117 0.883 27 H 0.083 0.917 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.143 0.857 31 H 0.147 0.853 32 H 0.086 0.914 33 H 0.089 0.911 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.063 0.937 37 H 0.048 0.952 38 H 0.061 0.939 39 H 0.153 0.847 40 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -14.222 11.299 -7.617 19.697 hybrid contribution 0.886 0.180 0.713 1.152 sum -13.336 11.480 -6.904 18.902 Atomic orbital electron populations 1.24067 0.94737 1.01816 1.02261 1.20470 0.94324 0.93227 0.99600 1.20854 1.00511 0.94138 1.01925 1.18784 1.01231 0.95119 0.95599 1.20959 0.97927 0.92624 0.97301 1.20349 1.00340 0.98558 0.98501 1.19200 0.91141 0.85827 0.94047 1.86097 1.62226 1.34563 1.38868 1.23891 0.93131 0.97614 0.84652 0.90070 1.23040 1.00624 0.92103 1.01689 1.21204 0.87796 0.88921 0.96705 1.44352 1.25708 1.11354 1.51646 1.19112 0.97700 0.99182 1.19822 0.90234 1.24826 0.99332 0.96130 1.00079 1.69960 1.40025 1.05586 1.41341 0.86007 0.82739 0.77525 0.79262 1.20445 1.21669 1.21664 1.21916 0.89393 0.94464 0.94848 1.21382 1.04997 0.96285 0.99834 1.20963 0.94429 0.95593 0.97291 0.88185 0.88330 0.91659 0.91430 0.91482 0.85704 0.85265 0.91407 0.91127 0.93046 0.93212 0.93669 0.95216 0.93925 0.84681 0.85938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.71 13.99 28.83 0.40 -1.31 16 2 C -0.08 -0.77 5.44 -102.63 -0.56 -1.33 16 3 C -0.12 -0.99 10.04 36.00 0.36 -0.63 16 4 C -0.11 -1.30 5.23 -105.00 -0.55 -1.84 16 5 C -0.07 -0.83 9.70 -39.22 -0.38 -1.21 16 6 C -0.16 -2.13 9.97 -39.49 -0.39 -2.53 16 7 C 0.14 2.25 6.68 -39.12 -0.26 1.99 16 8 O -0.31 -5.34 9.94 -19.31 -0.19 -5.53 16 9 C 0.06 1.19 2.80 -24.59 -0.07 1.12 16 10 H 0.08 1.46 6.23 -51.93 -0.32 1.13 16 11 C -0.14 -2.62 6.69 -24.90 -0.17 -2.78 16 12 C 0.18 4.32 5.37 -3.06 -0.02 4.30 16 13 N -0.60 -15.51 3.39 -170.08 -0.58 -16.09 16 14 C -0.23 -6.42 10.28 -15.06 -0.15 -6.58 16 15 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 16 C -0.01 -0.21 5.49 -17.43 -0.10 -0.30 16 17 N -0.92 -26.85 10.31 55.49 0.57 -26.28 16 18 Si 0.91 21.99 29.55 -169.99 -5.02 16.97 16 19 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 20 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 21 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 22 C 0.12 2.58 6.85 -2.53 -0.02 2.57 16 23 C -0.21 -3.06 8.92 -39.49 -0.35 -3.41 16 24 C -0.06 -0.84 9.76 -39.22 -0.38 -1.22 16 25 H 0.10 0.72 8.05 -52.49 -0.42 0.30 16 26 H 0.10 0.88 8.05 -52.49 -0.42 0.46 16 27 H 0.06 0.59 7.99 -51.93 -0.41 0.17 16 28 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.13 1.20 8.06 -52.48 -0.42 0.78 16 31 H 0.13 1.55 8.06 -52.49 -0.42 1.13 16 32 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 33 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 34 H 0.05 1.35 7.38 -51.93 -0.38 0.97 16 35 H 0.05 1.32 7.51 -51.93 -0.39 0.93 16 36 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 37 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.04 0.88 7.78 -51.93 -0.40 0.48 16 39 H 0.14 2.07 5.62 -52.48 -0.29 1.77 16 40 H 0.12 1.39 8.06 -52.49 -0.42 0.96 16 LS Contribution 331.37 15.07 4.99 4.99 Total: -1.00 -29.97 331.37 -8.84 -38.81 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: -5.98 Total: 0.29 kcal Atomic # 6 Polarization: -10.53 SS G_CDS: -2.63 Total: -13.16 kcal Atomic # 7 Polarization: -42.36 SS G_CDS: -0.01 Total: -42.37 kcal Atomic # 8 Polarization: -5.34 SS G_CDS: -0.19 Total: -5.53 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -29.97 -8.84 -38.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229078638.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.478 kcal (2) G-P(sol) polarization free energy of solvation -29.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.812 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds