Wall clock time and date at job start Mon Mar 30 2020 01:13:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32599 * 1 3 3 C 1.50694 * 119.99782 * 2 1 4 4 C 1.47771 * 120.00226 * 180.02562 * 2 1 3 5 5 C 1.39579 * 120.08380 * 64.99707 * 4 2 1 6 6 C 1.37854 * 119.91701 * 179.97438 * 5 4 2 7 7 C 1.38868 * 120.08297 * 359.97438 * 6 5 4 8 8 O 1.35863 * 119.91605 * 180.02562 * 7 6 5 9 9 C 1.42900 * 117.00124 * 185.69142 * 8 7 6 10 10 H 1.09001 * 110.88171 * 32.42217 * 9 8 7 11 11 C 1.55154 * 111.00222 * 156.30451 * 9 8 7 12 12 C 1.54327 * 102.94156 * 153.57667 * 11 9 8 13 13 N 1.47018 * 107.27125 * 337.80787 * 12 11 9 14 14 C 1.36934 * 125.65146 * 178.96339 * 13 12 11 15 15 H 1.07995 * 120.00423 * 179.97438 * 14 13 12 16 16 C 1.38817 * 119.99859 * 359.97307 * 14 13 12 17 17 N 1.31625 * 119.99626 * 359.97438 * 16 14 13 18 18 Si 1.86792 * 120.00069 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47468 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47492 * 120.00058 * 18 16 14 21 21 H 1.48503 * 109.47282 * 239.99695 * 18 16 14 22 22 C 1.47427 * 108.70255 * 358.93935 * 13 12 11 23 23 C 1.38856 * 120.16825 * 0.05011 * 7 6 5 24 24 C 1.37857 * 120.09373 * 359.95200 * 23 7 6 25 25 H 1.07994 * 120.00444 * 359.97438 * 1 2 3 26 26 H 1.07999 * 119.99720 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47149 * 180.02562 * 3 2 1 28 28 H 1.09007 * 109.47240 * 299.99867 * 3 2 1 29 29 H 1.08999 * 109.47604 * 59.99845 * 3 2 1 30 30 H 1.08004 * 120.04462 * 359.70658 * 5 4 2 31 31 H 1.07993 * 119.96536 * 180.02562 * 6 5 4 32 32 H 1.09004 * 110.71982 * 271.94239 * 11 9 8 33 33 H 1.08995 * 110.71957 * 35.03814 * 11 9 8 34 34 H 1.08998 * 109.88084 * 97.22142 * 12 11 9 35 35 H 1.09000 * 109.88019 * 218.38852 * 12 11 9 36 36 H 0.97003 * 119.99486 * 180.02562 * 17 16 14 37 37 H 1.09000 * 110.36922 * 265.29032 * 22 13 12 38 38 H 1.09001 * 110.36732 * 142.96978 * 22 13 12 39 39 H 1.08005 * 119.95832 * 179.97438 * 23 7 6 40 40 H 1.07990 * 120.04946 * 180.02562 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3260 0.0000 0.0000 3 6 2.0794 1.3051 0.0000 4 6 2.0649 -1.2797 -0.0006 5 6 1.9727 -2.1404 -1.0955 6 6 2.6639 -3.3331 -1.0927 7 6 3.4516 -3.6785 -0.0024 8 8 4.1318 -4.8546 -0.0034 9 6 4.8218 -5.2060 1.1976 10 1 4.2918 -4.8322 2.0737 11 6 5.0337 -6.7403 1.2885 12 6 6.2925 -6.8635 2.1729 13 7 7.0157 -5.5867 2.0831 14 6 8.1780 -5.2799 2.7389 15 1 8.6333 -4.3098 2.6057 16 6 8.7710 -6.2160 3.5750 17 7 8.2157 -7.3983 3.7378 18 14 10.3561 -5.7974 4.4701 19 1 10.7719 -4.4153 4.1206 20 1 10.1372 -5.8931 5.9358 21 1 11.4199 -6.7512 4.0654 22 6 6.2825 -4.6914 1.1697 23 6 3.5455 -2.8251 1.0889 24 6 2.8573 -1.6307 1.0936 25 1 -0.5400 0.9352 0.0004 26 1 -0.5399 -0.9353 0.0004 27 1 3.1510 1.1060 -0.0005 28 1 1.8161 1.8767 -0.8900 29 1 1.8161 1.8767 0.8899 30 1 1.3571 -1.8743 -1.9422 31 1 2.5934 -3.9994 -1.9396 32 1 4.1790 -7.2202 1.7653 33 1 5.2106 -7.1644 0.3002 34 1 6.0023 -7.0533 3.2063 35 1 6.9239 -7.6737 1.8081 36 1 8.6299 -8.0523 4.3223 37 1 6.6903 -4.7616 0.1613 38 1 6.3293 -3.6629 1.5279 39 1 4.1588 -3.0973 1.9353 40 1 2.9311 -0.9673 1.9426 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001229078638.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:20 Heat of formation + Delta-G solvation = 13.444159 kcal Electronic energy + Delta-G solvation = -20304.623865 eV Core-core repulsion = 17278.044558 eV Total energy + Delta-G solvation = -3026.579308 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.31685 -39.47426 -37.93965 -35.59814 -34.27052 -32.07298 -31.31094 -30.01470 -29.03601 -27.98869 -26.55709 -23.99032 -23.68670 -22.13732 -21.64654 -19.90181 -19.29451 -18.99206 -16.99990 -16.70887 -16.58097 -16.50974 -15.74205 -15.50747 -15.27812 -14.77106 -14.51703 -14.44647 -14.10722 -13.99218 -13.93668 -13.72478 -13.42650 -12.99996 -12.86532 -12.70014 -12.54526 -12.21401 -12.02316 -12.01138 -11.87089 -11.84591 -11.53181 -11.44336 -10.76500 -10.04327 -9.99500 -9.01377 -8.92685 -7.90023 -5.27681 0.30266 0.38835 1.33183 1.45631 1.46641 1.57228 2.11570 2.48520 2.76730 3.29128 3.59218 3.64556 3.79087 3.87746 3.92785 3.92970 4.06031 4.21336 4.38845 4.42500 4.56111 4.58066 4.68942 4.76080 4.79579 4.86540 4.90074 4.93189 5.03410 5.10102 5.15890 5.25626 5.38754 5.41321 5.54109 5.55623 5.67239 5.72991 5.84334 5.94366 6.12035 6.46282 7.03683 7.68081 8.32073 9.20581 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.028293 B = 0.003660 C = 0.003349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.405050 B = 7649.187983 C = 8358.538819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.097 4.097 3 C -0.115 4.115 4 C -0.100 4.100 5 C -0.068 4.068 6 C -0.158 4.158 7 C 0.112 3.888 8 O -0.312 6.312 9 C 0.084 3.916 10 H 0.088 0.912 11 C -0.123 4.123 12 C 0.186 3.814 13 N -0.623 5.623 14 C -0.248 4.248 15 H 0.083 0.917 16 C -0.062 4.062 17 N -0.949 5.949 18 Si 0.983 3.017 19 H -0.266 1.266 20 H -0.289 1.289 21 H -0.291 1.291 22 C 0.120 3.880 23 C -0.217 4.217 24 C -0.073 4.073 25 H 0.121 0.879 26 H 0.097 0.903 27 H 0.053 0.947 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.152 0.848 31 H 0.142 0.858 32 H 0.093 0.907 33 H 0.078 0.922 34 H 0.024 0.976 35 H 0.017 0.983 36 H 0.250 0.750 37 H 0.024 0.976 38 H 0.047 0.953 39 H 0.124 0.876 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.973 13.574 -8.395 22.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.097 4.097 3 C -0.172 4.172 4 C -0.100 4.100 5 C -0.086 4.086 6 C -0.177 4.177 7 C 0.067 3.933 8 O -0.225 6.225 9 C 0.027 3.973 10 H 0.106 0.894 11 C -0.161 4.161 12 C 0.061 3.939 13 N -0.351 5.351 14 C -0.377 4.377 15 H 0.101 0.899 16 C -0.256 4.256 17 N -0.598 5.598 18 Si 0.810 3.190 19 H -0.190 1.190 20 H -0.216 1.216 21 H -0.218 1.218 22 C -0.006 4.006 23 C -0.235 4.235 24 C -0.091 4.091 25 H 0.139 0.861 26 H 0.116 0.884 27 H 0.073 0.927 28 H 0.099 0.901 29 H 0.096 0.904 30 H 0.170 0.830 31 H 0.160 0.840 32 H 0.112 0.888 33 H 0.097 0.903 34 H 0.042 0.958 35 H 0.035 0.965 36 H 0.059 0.941 37 H 0.042 0.958 38 H 0.065 0.935 39 H 0.141 0.859 40 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -15.811 13.343 -8.419 22.335 hybrid contribution 1.260 -0.331 0.886 1.576 sum -14.550 13.012 -7.533 20.923 Atomic orbital electron populations 1.24252 0.94291 1.02808 1.00030 1.20538 0.94793 0.92814 1.01557 1.20851 0.99615 0.93590 1.03110 1.19115 1.00134 0.95861 0.94926 1.21292 0.97509 0.91802 0.98021 1.20595 0.99670 0.99299 0.98128 1.19469 0.92693 0.85667 0.95463 1.86055 1.62720 1.35868 1.37858 1.23479 0.91503 0.96623 0.85713 0.89428 1.22865 0.98931 0.93145 1.01195 1.20948 0.89212 0.87661 0.96047 1.44628 1.25796 1.12648 1.52054 1.19486 0.98725 0.99422 1.20035 0.89929 1.25693 1.02647 0.96106 1.01113 1.70167 1.41332 1.06392 1.41896 0.84955 0.78598 0.77733 0.77678 1.19032 1.21552 1.21785 1.21994 0.91006 0.94132 0.93492 1.21368 1.05550 0.97141 0.99459 1.21163 0.94456 0.95151 0.98302 0.86129 0.88449 0.92736 0.90131 0.90430 0.83023 0.83988 0.88817 0.90314 0.95799 0.96525 0.94114 0.95812 0.93489 0.85853 0.84634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.54 13.99 66.66 0.93 -1.61 16 2 C -0.10 -1.68 5.44 -18.50 -0.10 -1.78 16 3 C -0.12 -1.63 10.04 71.23 0.72 -0.91 16 4 C -0.10 -2.20 5.23 -20.11 -0.11 -2.31 16 5 C -0.07 -1.46 9.70 22.50 0.22 -1.24 16 6 C -0.16 -3.98 9.97 22.33 0.22 -3.76 16 7 C 0.11 3.41 6.68 22.57 0.15 3.56 16 8 O -0.31 -10.71 9.94 -92.01 -0.91 -11.63 16 9 C 0.08 3.11 2.80 31.98 0.09 3.20 16 10 H 0.09 3.13 6.23 -2.39 -0.01 3.12 16 11 C -0.12 -4.72 6.69 31.78 0.21 -4.50 16 12 C 0.19 9.33 5.37 86.73 0.47 9.79 16 13 N -0.62 -32.92 3.39 -692.00 -2.35 -35.27 16 14 C -0.25 -14.12 10.28 84.04 0.86 -13.26 16 15 H 0.08 4.51 7.83 -2.91 -0.02 4.49 16 16 C -0.06 -3.56 5.49 84.86 0.47 -3.10 16 17 N -0.95 -56.99 10.31 21.65 0.22 -56.77 16 18 Si 0.98 45.78 29.55 68.60 2.03 47.81 16 19 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 20 H -0.29 -13.32 7.11 99.48 0.71 -12.62 16 21 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 22 C 0.12 5.20 6.85 86.85 0.59 5.80 16 23 C -0.22 -6.32 8.92 22.33 0.20 -6.12 16 24 C -0.07 -1.80 9.76 22.50 0.22 -1.58 16 25 H 0.12 1.25 8.05 -2.91 -0.02 1.23 16 26 H 0.10 1.43 8.05 -2.91 -0.02 1.40 16 27 H 0.05 0.88 7.99 -2.39 -0.02 0.86 16 28 H 0.08 0.92 8.14 -2.38 -0.02 0.90 16 29 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.15 2.38 8.06 -2.91 -0.02 2.35 16 31 H 0.14 3.12 8.06 -2.91 -0.02 3.10 16 32 H 0.09 3.10 8.14 -2.38 -0.02 3.08 16 33 H 0.08 2.88 8.14 -2.39 -0.02 2.86 16 34 H 0.02 1.31 7.38 -2.39 -0.02 1.29 16 35 H 0.02 0.92 7.51 -2.39 -0.02 0.91 16 36 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 37 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.05 1.98 7.78 -2.39 -0.02 1.96 16 39 H 0.12 3.81 5.62 -2.91 -0.02 3.80 16 40 H 0.14 2.89 8.06 -2.92 -0.02 2.87 16 Total: -1.00 -65.36 331.37 5.14 -60.22 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: 1.01 Total: 13.44 kcal Atomic # 6 Polarization: -22.95 SS G_CDS: 5.15 Total: -17.81 kcal Atomic # 7 Polarization: -89.91 SS G_CDS: -2.13 Total: -92.04 kcal Atomic # 8 Polarization: -10.71 SS G_CDS: -0.91 Total: -11.63 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.81 kcal Total: -65.36 5.14 -60.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229078638.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.666 kcal (2) G-P(sol) polarization free energy of solvation -65.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.222 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds