Wall clock time and date at job start Mon Mar 30 2020 01:13:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32591 * 1 3 3 C 1.50699 * 120.00024 * 2 1 4 4 C 1.47777 * 119.99709 * 179.97438 * 2 1 3 5 5 C 1.39576 * 120.08658 * 65.00189 * 4 2 1 6 6 C 1.37850 * 119.91722 * 180.25352 * 5 4 2 7 7 C 1.38867 * 120.08302 * 359.42148 * 6 5 4 8 8 O 1.35861 * 119.91550 * 180.30182 * 7 6 5 9 9 C 1.42902 * 116.99815 * 174.81667 * 8 7 6 10 10 H 1.08996 * 110.64423 * 326.86393 * 9 8 7 11 11 C 1.55158 * 110.71753 * 203.72816 * 9 8 7 12 12 C 1.54909 * 101.58012 * 206.13308 * 11 9 8 13 13 N 1.47426 * 104.83414 * 37.01054 * 12 11 9 14 14 C 1.36931 * 125.65001 * 155.90530 * 13 12 11 15 15 H 1.07998 * 120.00094 * 179.97438 * 14 13 12 16 16 C 1.38819 * 120.00064 * 359.97438 * 14 13 12 17 17 N 1.31621 * 119.99847 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99809 * 179.97438 * 16 14 13 19 19 H 1.48492 * 109.47304 * 60.00196 * 18 16 14 20 20 H 1.48500 * 109.46743 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47369 * 299.99902 * 18 16 14 22 22 C 1.47026 * 108.70054 * 335.86944 * 13 12 11 23 23 C 1.38860 * 120.17108 * 0.60283 * 7 6 5 24 24 C 1.37861 * 120.08702 * 359.67631 * 23 7 6 25 25 H 1.07996 * 120.00390 * 180.02562 * 1 2 3 26 26 H 1.08004 * 119.99988 * 359.97438 * 1 2 3 27 27 H 1.08992 * 109.47418 * 269.99681 * 3 2 1 28 28 H 1.08995 * 109.47467 * 30.00207 * 3 2 1 29 29 H 1.09007 * 109.46783 * 150.00104 * 3 2 1 30 30 H 1.08006 * 120.03986 * 359.97438 * 5 4 2 31 31 H 1.07992 * 119.96220 * 179.72591 * 6 5 4 32 32 H 1.09005 * 111.00538 * 324.20397 * 11 9 8 33 33 H 1.08996 * 111.00741 * 88.02260 * 11 9 8 34 34 H 1.09002 * 110.36470 * 155.84894 * 12 11 9 35 35 H 1.08997 * 110.36827 * 278.16948 * 12 11 9 36 36 H 0.96999 * 119.99778 * 180.02562 * 17 16 14 37 37 H 1.08998 * 109.88010 * 241.64159 * 22 13 12 38 38 H 1.09000 * 109.87725 * 120.47873 * 22 13 12 39 39 H 1.08000 * 119.95891 * 179.69988 * 23 7 6 40 40 H 1.07997 * 120.04663 * 180.02562 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3259 0.0000 0.0000 3 6 2.0794 1.3051 0.0000 4 6 2.0647 -1.2798 0.0006 5 6 1.9725 -2.1414 -1.0936 6 6 2.6591 -3.3368 -1.0872 7 6 3.4512 -3.6787 0.0010 8 8 4.1312 -4.8549 0.0011 9 6 5.0152 -5.0931 1.0983 10 1 5.4583 -4.1593 1.4445 11 6 6.1180 -6.1108 0.7038 12 6 6.4837 -6.7218 2.0795 13 7 5.2043 -6.8061 2.8072 14 6 4.9256 -7.6677 3.8343 15 1 3.9535 -7.6509 4.3046 16 6 5.8925 -8.5629 4.2711 17 7 7.0773 -8.5831 3.6983 18 14 5.5124 -9.7378 5.6727 19 1 4.3662 -10.6034 5.2960 20 1 6.7020 -10.5837 5.9458 21 1 5.1669 -8.9608 6.8901 22 6 4.2775 -5.8111 2.2480 23 6 3.5451 -2.8245 1.0917 24 6 2.8570 -1.6299 1.0952 25 1 -0.5400 -0.9352 0.0004 26 1 -0.5400 0.9353 0.0004 27 1 2.2611 1.6197 -1.0276 28 1 1.4904 2.0647 0.5138 29 1 3.0319 1.1747 0.5139 30 1 1.3605 -1.8740 -1.9424 31 1 2.5847 -4.0060 -1.9315 32 1 5.7242 -6.8721 0.0304 33 1 6.9755 -5.6052 0.2599 34 1 6.9132 -7.7154 1.9511 35 1 7.1799 -6.0724 2.6101 36 1 7.7528 -9.2089 4.0032 37 1 3.9991 -5.0905 3.0170 38 1 3.3872 -6.3087 1.8636 39 1 4.1583 -3.0960 1.9382 40 1 2.9308 -0.9658 1.9436 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001229078640.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:24 Heat of formation + Delta-G solvation = 14.498742 kcal Electronic energy + Delta-G solvation = -20280.666939 eV Core-core repulsion = 17254.133362 eV Total energy + Delta-G solvation = -3026.533577 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.33968 -39.48031 -37.92426 -35.60577 -34.27450 -32.08512 -31.31231 -30.01132 -29.03431 -27.98308 -26.56667 -23.96606 -23.71314 -22.16022 -21.61943 -19.91237 -19.24774 -19.01843 -17.11672 -16.72212 -16.62315 -16.56336 -15.58097 -15.53098 -15.32198 -14.71769 -14.55075 -14.38538 -14.29070 -14.05513 -13.69092 -13.64970 -13.36658 -13.04207 -12.84420 -12.67411 -12.49782 -12.35323 -12.08730 -11.99762 -11.91692 -11.78773 -11.53493 -11.40842 -10.79130 -10.05945 -10.00180 -9.00268 -8.93295 -7.82697 -5.28622 0.29496 0.38132 1.33147 1.45820 1.49275 1.55788 2.14615 2.48070 2.75819 3.28054 3.57469 3.63975 3.78884 3.88260 3.91828 3.91905 4.06074 4.21200 4.38859 4.44031 4.54817 4.58509 4.69808 4.74861 4.83268 4.86902 4.88661 4.93512 5.02475 5.08762 5.16684 5.24243 5.38412 5.41371 5.52997 5.53430 5.71480 5.72722 5.83989 5.94169 6.23615 6.46517 7.04435 7.69275 8.32387 9.19440 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.033488 B = 0.003446 C = 0.003298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.916263 B = 8122.407329 C = 8489.103992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.096 4.096 3 C -0.114 4.114 4 C -0.100 4.100 5 C -0.068 4.068 6 C -0.160 4.160 7 C 0.111 3.889 8 O -0.315 6.315 9 C 0.087 3.913 10 H 0.094 0.906 11 C -0.123 4.123 12 C 0.155 3.845 13 N -0.623 5.623 14 C -0.248 4.248 15 H 0.079 0.921 16 C -0.062 4.062 17 N -0.947 5.947 18 Si 0.984 3.016 19 H -0.277 1.277 20 H -0.289 1.289 21 H -0.277 1.277 22 C 0.119 3.881 23 C -0.216 4.216 24 C -0.072 4.072 25 H 0.094 0.906 26 H 0.121 0.879 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.060 0.940 30 H 0.151 0.849 31 H 0.140 0.860 32 H 0.069 0.931 33 H 0.098 0.902 34 H 0.083 0.917 35 H 0.001 0.999 36 H 0.251 0.749 37 H 0.030 0.970 38 H 0.024 0.976 39 H 0.126 0.874 40 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.493 18.036 -9.703 22.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.096 4.096 3 C -0.171 4.171 4 C -0.101 4.101 5 C -0.086 4.086 6 C -0.179 4.179 7 C 0.066 3.934 8 O -0.228 6.228 9 C 0.030 3.970 10 H 0.112 0.888 11 C -0.161 4.161 12 C 0.030 3.970 13 N -0.351 5.351 14 C -0.377 4.377 15 H 0.097 0.903 16 C -0.255 4.255 17 N -0.596 5.596 18 Si 0.812 3.188 19 H -0.203 1.203 20 H -0.215 1.215 21 H -0.203 1.203 22 C -0.007 4.007 23 C -0.234 4.234 24 C -0.090 4.090 25 H 0.113 0.887 26 H 0.139 0.861 27 H 0.094 0.906 28 H 0.097 0.903 29 H 0.079 0.921 30 H 0.169 0.831 31 H 0.158 0.842 32 H 0.088 0.912 33 H 0.116 0.884 34 H 0.101 0.899 35 H 0.019 0.981 36 H 0.060 0.940 37 H 0.048 0.952 38 H 0.042 0.958 39 H 0.144 0.856 40 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -9.400 17.723 -9.726 22.295 hybrid contribution 0.150 -0.918 1.134 1.467 sum -9.250 16.805 -8.592 21.019 Atomic orbital electron populations 1.24279 0.94379 1.02730 1.00183 1.20543 0.94737 0.92922 1.01421 1.20865 1.00048 0.93307 1.02841 1.19107 1.00153 0.95879 0.94934 1.21282 0.97425 0.91793 0.98125 1.20589 1.00208 0.99097 0.97996 1.19498 0.93328 0.85394 0.95185 1.86109 1.55485 1.35232 1.45971 1.23362 0.89422 0.98743 0.85473 0.88813 1.23022 0.97000 0.97476 0.98639 1.21782 0.87182 1.00460 0.87548 1.44658 1.11361 1.39962 1.39078 1.19407 0.98609 1.11241 1.08413 0.90318 1.25665 0.95779 1.01439 1.02591 1.69990 1.05023 1.40076 1.44525 0.85071 0.76784 0.78310 0.78659 1.20343 1.21522 1.20299 1.21773 0.93294 0.91508 0.94116 1.21371 1.05675 0.97246 0.99150 1.21180 0.94382 0.95211 0.98210 0.88746 0.86058 0.90609 0.90305 0.92138 0.83122 0.84244 0.91205 0.88392 0.89937 0.98087 0.93956 0.95182 0.95845 0.85592 0.84376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.66 13.95 66.66 0.93 -1.73 16 2 C -0.10 -1.65 5.44 -18.50 -0.10 -1.75 16 3 C -0.11 -1.52 10.02 71.24 0.71 -0.80 16 4 C -0.10 -2.20 5.31 -20.11 -0.11 -2.30 16 5 C -0.07 -1.48 9.70 22.50 0.22 -1.26 16 6 C -0.16 -4.14 9.97 22.33 0.22 -3.91 16 7 C 0.11 3.42 6.68 22.57 0.15 3.57 16 8 O -0.31 -11.11 9.86 -91.98 -0.91 -12.02 16 9 C 0.09 3.21 2.74 31.78 0.09 3.30 16 10 H 0.09 3.17 6.25 -2.39 -0.01 3.16 16 11 C -0.12 -4.78 6.81 31.99 0.22 -4.57 16 12 C 0.16 7.72 5.89 86.85 0.51 8.24 16 13 N -0.62 -33.27 3.39 -691.98 -2.35 -35.61 16 14 C -0.25 -14.27 10.27 84.04 0.86 -13.41 16 15 H 0.08 4.36 7.83 -2.91 -0.02 4.34 16 16 C -0.06 -3.53 5.49 84.86 0.47 -3.07 16 17 N -0.95 -56.26 10.09 21.65 0.22 -56.05 16 18 Si 0.98 45.80 29.55 68.60 2.03 47.82 16 19 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 20 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 21 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 22 C 0.12 5.27 6.79 86.73 0.59 5.86 16 23 C -0.22 -6.19 8.88 22.33 0.20 -5.99 16 24 C -0.07 -1.74 9.68 22.51 0.22 -1.52 16 25 H 0.09 1.49 8.05 -2.91 -0.02 1.46 16 26 H 0.12 1.30 8.05 -2.91 -0.02 1.27 16 27 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.08 0.81 8.07 -2.39 -0.02 0.79 16 29 H 0.06 0.86 8.03 -2.38 -0.02 0.84 16 30 H 0.15 2.43 8.06 -2.91 -0.02 2.41 16 31 H 0.14 3.22 8.06 -2.91 -0.02 3.20 16 32 H 0.07 2.77 8.14 -2.38 -0.02 2.75 16 33 H 0.10 3.19 8.14 -2.39 -0.02 3.17 16 34 H 0.08 4.64 5.88 -2.39 -0.01 4.63 16 35 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 36 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 37 H 0.03 1.30 7.79 -2.39 -0.02 1.28 16 38 H 0.02 1.09 8.06 -2.39 -0.02 1.07 16 39 H 0.13 3.71 5.59 -2.91 -0.02 3.70 16 40 H 0.14 2.81 8.06 -2.91 -0.02 2.78 16 Total: -1.00 -65.22 330.47 5.18 -60.04 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: 1.01 Total: 15.16 kcal Atomic # 6 Polarization: -24.52 SS G_CDS: 5.18 Total: -19.34 kcal Atomic # 7 Polarization: -89.53 SS G_CDS: -2.13 Total: -91.66 kcal Atomic # 8 Polarization: -11.11 SS G_CDS: -0.91 Total: -12.02 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.82 kcal Total: -65.22 5.18 -60.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229078640.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.536 kcal (2) G-P(sol) polarization free energy of solvation -65.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds