Wall clock time and date at job start Mon Mar 30 2020 01:13:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50698 * 119.99925 * 2 1 4 4 C 1.50698 * 109.47250 * 125.00261 * 3 2 1 5 5 C 1.38291 * 119.97133 * 270.02094 * 4 3 2 6 6 C 1.38243 * 120.11183 * 180.02562 * 5 4 3 7 7 C 1.38169 * 120.05537 * 359.67769 * 6 5 4 8 8 C 1.38714 * 119.93969 * 0.58098 * 7 6 5 9 9 O 1.35899 * 120.05206 * 179.72221 * 8 7 6 10 10 C 1.42898 * 117.00204 * 5.20475 * 9 8 7 11 11 H 1.09000 * 110.63960 * 33.11849 * 10 9 8 12 12 C 1.55153 * 110.72242 * 156.26336 * 10 9 8 13 13 C 1.54911 * 101.58587 * 153.86667 * 12 10 9 14 14 N 1.47427 * 104.92552 * 322.93346 * 13 12 10 15 15 C 1.36932 * 125.65128 * 204.15479 * 14 13 12 16 16 H 1.08003 * 120.00626 * 180.02562 * 15 14 13 17 17 C 1.38814 * 119.99828 * 0.02770 * 15 14 13 18 18 N 1.31611 * 120.00007 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 119.99840 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47382 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.47391 * 119.99759 * 19 17 15 22 22 H 1.48506 * 109.46832 * 239.99698 * 19 17 15 23 23 C 1.47295 * 108.55875 * 24.15816 * 14 13 12 24 24 C 1.38117 * 119.97324 * 90.00113 * 4 3 2 25 25 H 1.07990 * 120.00478 * 359.97438 * 1 2 3 26 26 H 1.08008 * 119.99686 * 180.02562 * 1 2 3 27 27 H 1.08004 * 120.00102 * 180.02562 * 2 1 3 28 28 H 1.09008 * 109.47029 * 4.99966 * 3 2 1 29 29 H 1.08999 * 109.47489 * 245.00265 * 3 2 1 30 30 H 1.08000 * 119.94433 * 0.02562 * 5 4 3 31 31 H 1.08004 * 119.97121 * 179.97438 * 6 5 4 32 32 H 1.07992 * 120.02770 * 180.29724 * 7 6 5 33 33 H 1.09005 * 111.00231 * 35.79027 * 12 10 9 34 34 H 1.09004 * 111.00459 * 271.94024 * 12 10 9 35 35 H 1.08999 * 110.36854 * 81.82554 * 13 12 10 36 36 H 1.09004 * 110.36671 * 204.04537 * 13 12 10 37 37 H 0.97002 * 120.00236 * 180.02562 * 18 17 15 38 38 H 1.09001 * 109.85369 * 239.49861 * 23 14 13 39 39 H 1.08994 * 109.87525 * 118.35901 * 23 14 13 40 40 H 1.08001 * 120.03014 * 0.02562 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0204 1.3327 1.1638 5 6 2.6092 1.8356 2.3846 6 6 3.4848 1.8627 3.4540 7 6 4.7715 1.3811 3.3073 8 6 5.1881 0.8811 2.0823 9 8 6.4549 0.4121 1.9338 10 6 7.2681 0.3574 3.1075 11 1 6.6608 0.1393 3.9860 12 6 8.3965 -0.6950 2.9451 13 6 9.4780 -0.1426 3.9069 14 7 9.3983 1.3228 3.7665 15 6 10.4101 2.2062 4.0325 16 1 10.2512 3.2660 3.8979 17 6 11.6403 1.7397 4.4752 18 7 11.8339 0.4484 4.6398 19 14 13.0204 2.9450 4.8389 20 1 12.5509 4.3291 4.5764 21 1 13.4241 2.8205 6.2625 22 1 14.1836 2.6435 3.9662 23 6 8.0490 1.6756 3.2926 24 6 4.3074 0.8553 1.0104 25 1 -0.5400 0.9352 0.0004 26 1 -0.5400 -0.9354 0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 1.3585 2.1317 0.0896 29 1 2.6212 1.4027 -0.9314 30 1 1.6022 2.2077 2.5028 31 1 3.1614 2.2563 4.4064 32 1 5.4537 1.3981 4.1443 33 1 8.7625 -0.7201 1.9186 34 1 8.0590 -1.6818 3.2621 35 1 9.2595 -0.4378 4.9331 36 1 10.4652 -0.4988 3.6123 37 1 12.6934 0.1224 4.9495 38 1 8.1170 2.2030 2.3411 39 1 7.5490 2.3022 4.0311 40 1 4.6282 0.4627 0.0567 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001231015090.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:28 Heat of formation + Delta-G solvation = 31.087234 kcal Electronic energy + Delta-G solvation = -20233.355464 eV Core-core repulsion = 17207.541218 eV Total energy + Delta-G solvation = -3025.814246 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.13673 -38.19717 -36.26727 -34.93981 -32.36579 -31.26719 -30.04457 -29.08684 -27.45666 -26.41958 -24.56891 -22.51570 -21.88592 -20.26187 -20.21057 -19.60026 -17.79466 -17.03695 -15.95041 -15.89538 -15.18220 -15.01628 -14.68005 -14.47240 -14.05966 -13.63373 -13.61053 -13.26377 -12.73417 -12.51966 -12.16144 -12.01929 -11.80830 -11.61486 -11.47547 -11.24564 -11.03839 -10.93943 -10.78114 -10.41848 -10.21401 -10.04037 -9.83162 -9.62699 -9.58421 -8.77742 -8.70638 -7.99936 -6.90564 -5.70309 -3.12559 1.33927 1.54998 2.07910 3.37926 3.42789 3.45586 3.49921 3.81549 4.45717 4.65912 4.83761 4.89676 4.97190 5.11949 5.20966 5.24051 5.31766 5.37841 5.44555 5.52132 5.58173 5.64212 5.66287 5.71658 5.79663 6.06139 6.24177 6.34707 6.38631 6.43989 6.45724 6.47302 6.52375 6.60429 6.62185 6.65105 6.93849 7.41236 7.57374 7.72385 7.80921 8.29103 9.16250 9.76333 10.40049 11.34120 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.043314 B = 0.003280 C = 0.003188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.291355 B = 8535.736640 C = 8781.944399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.141 4.141 3 C -0.054 4.054 4 C -0.045 4.045 5 C -0.162 4.162 6 C -0.077 4.077 7 C -0.211 4.211 8 C 0.144 3.856 9 O -0.304 6.304 10 C 0.069 3.931 11 H 0.077 0.923 12 C -0.136 4.136 13 C 0.152 3.848 14 N -0.601 5.601 15 C -0.222 4.222 16 H 0.079 0.921 17 C -0.011 4.011 18 N -0.923 5.923 19 Si 0.917 3.083 20 H -0.280 1.280 21 H -0.290 1.290 22 H -0.289 1.289 23 C 0.119 3.881 24 C -0.156 4.156 25 H 0.095 0.905 26 H 0.097 0.903 27 H 0.110 0.890 28 H 0.077 0.923 29 H 0.084 0.916 30 H 0.118 0.882 31 H 0.122 0.878 32 H 0.132 0.868 33 H 0.073 0.927 34 H 0.066 0.934 35 H 0.016 0.984 36 H 0.114 0.886 37 H 0.253 0.747 38 H 0.036 0.964 39 H 0.026 0.974 40 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.608 -0.961 -6.407 20.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.159 4.159 3 C -0.091 4.091 4 C -0.045 4.045 5 C -0.180 4.180 6 C -0.095 4.095 7 C -0.230 4.230 8 C 0.098 3.902 9 O -0.217 6.217 10 C 0.013 3.987 11 H 0.095 0.905 12 C -0.175 4.175 13 C 0.027 3.973 14 N -0.329 5.329 15 C -0.350 4.350 16 H 0.097 0.903 17 C -0.207 4.207 18 N -0.572 5.572 19 Si 0.747 3.253 20 H -0.205 1.205 21 H -0.217 1.217 22 H -0.216 1.216 23 C -0.007 4.007 24 C -0.175 4.175 25 H 0.114 0.886 26 H 0.115 0.885 27 H 0.128 0.872 28 H 0.096 0.904 29 H 0.102 0.898 30 H 0.136 0.864 31 H 0.140 0.860 32 H 0.149 0.851 33 H 0.092 0.908 34 H 0.085 0.915 35 H 0.034 0.966 36 H 0.132 0.868 37 H 0.064 0.936 38 H 0.054 0.946 39 H 0.044 0.956 40 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -19.279 -1.016 -6.504 20.372 hybrid contribution 0.655 0.652 0.580 1.091 sum -18.623 -0.364 -5.924 19.546 Atomic orbital electron populations 1.23824 0.95813 1.01798 1.02072 1.22889 0.95846 0.98204 0.98986 1.19766 0.96933 0.95927 0.96509 1.19439 0.93175 0.97070 0.94846 1.20823 0.99802 1.04506 0.92915 1.20904 0.92838 0.97222 0.98551 1.21419 0.98283 1.05631 0.97658 1.19086 0.84736 0.92754 0.93651 1.86158 1.20639 1.78652 1.36265 1.23681 0.90825 0.98533 0.85681 0.90470 1.23208 0.95407 0.96249 1.02599 1.21998 0.98276 0.83105 0.93900 1.44448 1.07384 1.02918 1.78134 1.19133 0.89758 0.88784 1.37331 0.90305 1.24804 0.97877 0.96353 1.01625 1.69764 1.23444 1.11209 1.52769 0.85959 0.81925 0.79788 0.77595 1.20477 1.21683 1.21640 1.21738 0.87596 0.93681 0.97733 1.20262 0.92520 1.06259 0.98460 0.88625 0.88505 0.87189 0.90434 0.89812 0.86415 0.86003 0.85060 0.90793 0.91534 0.96581 0.86844 0.93639 0.94630 0.95598 0.85460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.51 14.32 29.01 0.42 -1.09 16 2 C -0.14 -1.23 9.50 -36.03 -0.34 -1.57 16 3 C -0.05 -0.49 5.79 -29.04 -0.17 -0.66 16 4 C -0.05 -0.53 5.11 -104.65 -0.54 -1.07 16 5 C -0.16 -1.88 9.70 -39.56 -0.38 -2.26 16 6 C -0.08 -0.96 10.04 -39.60 -0.40 -1.36 16 7 C -0.21 -3.11 8.91 -39.43 -0.35 -3.46 16 8 C 0.14 2.28 6.67 -39.22 -0.26 2.02 16 9 O -0.30 -5.47 9.86 -19.42 -0.19 -5.66 16 10 C 0.07 1.30 2.74 -24.90 -0.07 1.23 16 11 H 0.08 1.34 6.25 -51.93 -0.32 1.02 16 12 C -0.14 -2.67 6.81 -24.58 -0.17 -2.84 16 13 C 0.15 3.70 5.88 -2.53 -0.01 3.68 16 14 N -0.60 -15.69 3.40 -169.85 -0.58 -16.26 16 15 C -0.22 -6.25 10.28 -15.06 -0.15 -6.40 16 16 H 0.08 2.16 7.83 -52.48 -0.41 1.74 16 17 C -0.01 -0.32 5.49 -17.43 -0.10 -0.41 16 18 N -0.92 -26.80 10.09 55.49 0.56 -26.24 16 19 Si 0.92 22.08 29.55 -169.99 -5.02 17.06 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 22 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 23 C 0.12 2.60 6.82 -2.91 -0.02 2.58 16 24 C -0.16 -2.14 9.64 -39.44 -0.38 -2.52 16 25 H 0.10 0.64 7.84 -52.49 -0.41 0.22 16 26 H 0.10 0.65 8.06 -52.48 -0.42 0.22 16 27 H 0.11 0.97 8.06 -52.48 -0.42 0.55 16 28 H 0.08 0.61 7.74 -51.92 -0.40 0.20 16 29 H 0.08 0.70 8.08 -51.93 -0.42 0.28 16 30 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 31 H 0.12 1.24 8.06 -52.48 -0.42 0.82 16 32 H 0.13 1.96 5.63 -52.49 -0.30 1.67 16 33 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 34 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.11 3.08 5.87 -51.93 -0.30 2.77 16 37 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 38 H 0.04 0.81 8.06 -51.93 -0.42 0.39 16 39 H 0.03 0.55 7.82 -51.93 -0.41 0.15 16 40 H 0.13 1.60 8.06 -52.49 -0.42 1.18 16 LS Contribution 330.07 15.07 4.97 4.97 Total: -1.00 -30.14 330.07 -9.10 -39.23 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: -5.91 Total: 1.04 kcal Atomic # 6 Polarization: -11.22 SS G_CDS: -2.93 Total: -14.14 kcal Atomic # 7 Polarization: -42.49 SS G_CDS: -0.02 Total: -42.50 kcal Atomic # 8 Polarization: -5.47 SS G_CDS: -0.19 Total: -5.66 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -30.14 -9.10 -39.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231015090.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.318 kcal (2) G-P(sol) polarization free energy of solvation -30.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.231 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds