Wall clock time and date at job start Mon Mar 30 2020 01:13:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50698 * 119.99925 * 2 1 4 4 C 1.50698 * 109.47250 * 125.00261 * 3 2 1 5 5 C 1.38291 * 119.97133 * 270.02094 * 4 3 2 6 6 C 1.38243 * 120.11183 * 180.02562 * 5 4 3 7 7 C 1.38169 * 120.05537 * 359.67769 * 6 5 4 8 8 C 1.38714 * 119.93969 * 0.58098 * 7 6 5 9 9 O 1.35899 * 120.05206 * 179.72221 * 8 7 6 10 10 C 1.42898 * 117.00204 * 5.20475 * 9 8 7 11 11 H 1.09000 * 110.63960 * 33.11849 * 10 9 8 12 12 C 1.55153 * 110.72242 * 156.26336 * 10 9 8 13 13 C 1.54911 * 101.58587 * 153.86667 * 12 10 9 14 14 N 1.47427 * 104.92552 * 322.93346 * 13 12 10 15 15 C 1.36932 * 125.65128 * 204.15479 * 14 13 12 16 16 H 1.08003 * 120.00626 * 180.02562 * 15 14 13 17 17 C 1.38814 * 119.99828 * 0.02770 * 15 14 13 18 18 N 1.31611 * 120.00007 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 119.99840 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47382 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.47391 * 119.99759 * 19 17 15 22 22 H 1.48506 * 109.46832 * 239.99698 * 19 17 15 23 23 C 1.47295 * 108.55875 * 24.15816 * 14 13 12 24 24 C 1.38117 * 119.97324 * 90.00113 * 4 3 2 25 25 H 1.07990 * 120.00478 * 359.97438 * 1 2 3 26 26 H 1.08008 * 119.99686 * 180.02562 * 1 2 3 27 27 H 1.08004 * 120.00102 * 180.02562 * 2 1 3 28 28 H 1.09008 * 109.47029 * 4.99966 * 3 2 1 29 29 H 1.08999 * 109.47489 * 245.00265 * 3 2 1 30 30 H 1.08000 * 119.94433 * 0.02562 * 5 4 3 31 31 H 1.08004 * 119.97121 * 179.97438 * 6 5 4 32 32 H 1.07992 * 120.02770 * 180.29724 * 7 6 5 33 33 H 1.09005 * 111.00231 * 35.79027 * 12 10 9 34 34 H 1.09004 * 111.00459 * 271.94024 * 12 10 9 35 35 H 1.08999 * 110.36854 * 81.82554 * 13 12 10 36 36 H 1.09004 * 110.36671 * 204.04537 * 13 12 10 37 37 H 0.97002 * 120.00236 * 180.02562 * 18 17 15 38 38 H 1.09001 * 109.85369 * 239.49861 * 23 14 13 39 39 H 1.08994 * 109.87525 * 118.35901 * 23 14 13 40 40 H 1.08001 * 120.03014 * 0.02562 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0204 1.3327 1.1638 5 6 2.6092 1.8356 2.3846 6 6 3.4848 1.8627 3.4540 7 6 4.7715 1.3811 3.3073 8 6 5.1881 0.8811 2.0823 9 8 6.4549 0.4121 1.9338 10 6 7.2681 0.3574 3.1075 11 1 6.6608 0.1393 3.9860 12 6 8.3965 -0.6950 2.9451 13 6 9.4780 -0.1426 3.9069 14 7 9.3983 1.3228 3.7665 15 6 10.4101 2.2062 4.0325 16 1 10.2512 3.2660 3.8979 17 6 11.6403 1.7397 4.4752 18 7 11.8339 0.4484 4.6398 19 14 13.0204 2.9450 4.8389 20 1 12.5509 4.3291 4.5764 21 1 13.4241 2.8205 6.2625 22 1 14.1836 2.6435 3.9662 23 6 8.0490 1.6756 3.2926 24 6 4.3074 0.8553 1.0104 25 1 -0.5400 0.9352 0.0004 26 1 -0.5400 -0.9354 0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 1.3585 2.1317 0.0896 29 1 2.6212 1.4027 -0.9314 30 1 1.6022 2.2077 2.5028 31 1 3.1614 2.2563 4.4064 32 1 5.4537 1.3981 4.1443 33 1 8.7625 -0.7201 1.9186 34 1 8.0590 -1.6818 3.2621 35 1 9.2595 -0.4378 4.9331 36 1 10.4652 -0.4988 3.6123 37 1 12.6934 0.1224 4.9495 38 1 8.1170 2.2030 2.3411 39 1 7.5490 2.3022 4.0311 40 1 4.6282 0.4627 0.0567 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001231015090.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:27 Heat of formation + Delta-G solvation = 15.802550 kcal Electronic energy + Delta-G solvation = -20234.018258 eV Core-core repulsion = 17207.541218 eV Total energy + Delta-G solvation = -3026.477040 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.34372 -39.48000 -37.84016 -35.74661 -34.33106 -32.16664 -31.50124 -30.63604 -29.10829 -27.32333 -26.51967 -23.55089 -23.16351 -22.14616 -21.30792 -20.53722 -19.08543 -18.93834 -17.23191 -16.88690 -16.72040 -16.59256 -15.82882 -15.57232 -15.51277 -15.02720 -14.64177 -14.42612 -14.22254 -13.99067 -13.68436 -13.34051 -13.12564 -12.93406 -12.84520 -12.72888 -12.39991 -12.20087 -12.05968 -12.00354 -11.95182 -11.77165 -11.53038 -11.39989 -10.80987 -10.21244 -9.75905 -9.12932 -8.97513 -7.83010 -5.28852 0.35082 0.51134 1.45825 1.45996 1.47039 1.57575 2.15548 2.47603 2.80730 3.27974 3.57315 3.64403 3.85384 3.90510 3.94987 3.98599 4.13492 4.22240 4.33546 4.40745 4.42861 4.54568 4.57735 4.66273 4.80834 4.83455 4.90057 4.93301 5.02087 5.12270 5.14814 5.38531 5.42046 5.51662 5.52794 5.63485 5.71305 5.77387 5.85750 5.97335 6.23238 6.49552 7.04164 7.68580 8.32266 9.19535 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.043314 B = 0.003280 C = 0.003188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.291355 B = 8535.736640 C = 8781.944399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.160 4.160 3 C -0.051 4.051 4 C -0.041 4.041 5 C -0.156 4.156 6 C -0.079 4.079 7 C -0.226 4.226 8 C 0.112 3.888 9 O -0.317 6.317 10 C 0.087 3.913 11 H 0.093 0.907 12 C -0.123 4.123 13 C 0.155 3.845 14 N -0.624 5.624 15 C -0.243 4.243 16 H 0.079 0.921 17 C -0.064 4.064 18 N -0.948 5.948 19 Si 0.985 3.015 20 H -0.268 1.268 21 H -0.289 1.289 22 H -0.289 1.289 23 C 0.119 3.881 24 C -0.165 4.165 25 H 0.109 0.891 26 H 0.105 0.895 27 H 0.102 0.898 28 H 0.095 0.905 29 H 0.088 0.912 30 H 0.147 0.853 31 H 0.146 0.854 32 H 0.123 0.877 33 H 0.069 0.931 34 H 0.097 0.903 35 H 0.001 0.999 36 H 0.083 0.917 37 H 0.250 0.750 38 H 0.024 0.976 39 H 0.031 0.969 40 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.063 -0.228 -6.771 23.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.178 4.178 3 C -0.088 4.088 4 C -0.042 4.042 5 C -0.174 4.174 6 C -0.097 4.097 7 C -0.245 4.245 8 C 0.067 3.933 9 O -0.230 6.230 10 C 0.031 3.969 11 H 0.111 0.889 12 C -0.162 4.162 13 C 0.030 3.970 14 N -0.351 5.351 15 C -0.372 4.372 16 H 0.097 0.903 17 C -0.257 4.257 18 N -0.597 5.597 19 Si 0.812 3.188 20 H -0.193 1.193 21 H -0.215 1.215 22 H -0.216 1.216 23 C -0.007 4.007 24 C -0.184 4.184 25 H 0.127 0.873 26 H 0.123 0.877 27 H 0.120 0.880 28 H 0.114 0.886 29 H 0.106 0.894 30 H 0.165 0.835 31 H 0.163 0.837 32 H 0.141 0.859 33 H 0.088 0.912 34 H 0.115 0.885 35 H 0.019 0.981 36 H 0.101 0.899 37 H 0.060 0.940 38 H 0.042 0.958 39 H 0.049 0.951 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -21.770 -0.278 -6.883 22.834 hybrid contribution 1.251 0.451 0.650 1.480 sum -20.519 0.174 -6.234 21.446 Atomic orbital electron populations 1.24027 0.95444 1.02866 0.99963 1.22847 0.96309 0.97763 1.00917 1.19804 0.96709 0.96774 0.95486 1.19792 0.92720 0.95589 0.96055 1.21219 1.00850 1.03105 0.92272 1.21221 0.91975 0.96496 1.00031 1.21467 0.99367 1.06621 0.97043 1.19386 0.84180 0.94703 0.95039 1.86108 1.21861 1.79533 1.35523 1.23341 0.90701 0.96019 0.86869 0.88901 1.23021 0.94301 0.97801 1.01031 1.21777 0.98380 0.82728 0.94110 1.44737 1.08657 1.03500 1.78215 1.19467 0.90829 0.89364 1.37532 0.90283 1.25670 1.00115 0.98146 1.01729 1.70000 1.23718 1.12750 1.53248 0.84924 0.78610 0.78166 0.77072 1.19269 1.21537 1.21552 1.21821 0.86366 0.95598 0.96916 1.20476 0.93171 1.06559 0.98167 0.87313 0.87716 0.87960 0.88648 0.89384 0.83510 0.83667 0.85910 0.91249 0.88474 0.98120 0.89935 0.93985 0.95797 0.95070 0.85050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.25 14.32 67.78 0.97 -1.28 16 2 C -0.16 -2.41 9.50 25.65 0.24 -2.16 16 3 C -0.05 -0.78 5.79 29.10 0.17 -0.61 16 4 C -0.04 -0.88 5.11 -19.88 -0.10 -0.98 16 5 C -0.16 -3.14 9.70 22.28 0.22 -2.92 16 6 C -0.08 -1.80 10.04 22.25 0.22 -1.58 16 7 C -0.23 -6.47 8.91 22.37 0.20 -6.27 16 8 C 0.11 3.49 6.67 22.51 0.15 3.64 16 9 O -0.32 -11.38 9.86 -92.42 -0.91 -12.29 16 10 C 0.09 3.28 2.74 31.78 0.09 3.36 16 11 H 0.09 3.19 6.25 -2.39 -0.01 3.17 16 12 C -0.12 -4.84 6.81 31.99 0.22 -4.62 16 13 C 0.15 7.76 5.88 86.86 0.51 8.27 16 14 N -0.62 -33.38 3.40 -691.28 -2.35 -35.73 16 15 C -0.24 -14.00 10.28 84.03 0.86 -13.13 16 16 H 0.08 4.40 7.83 -2.91 -0.02 4.38 16 17 C -0.06 -3.66 5.49 84.86 0.47 -3.19 16 18 N -0.95 -56.48 10.09 21.65 0.22 -56.26 16 19 Si 0.98 45.93 29.55 68.60 2.03 47.95 16 20 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 21 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 22 H -0.29 -13.35 7.11 99.48 0.71 -12.65 16 23 C 0.12 5.28 6.82 86.68 0.59 5.88 16 24 C -0.17 -4.36 9.64 22.36 0.22 -4.15 16 25 H 0.11 1.03 7.84 -2.92 -0.02 1.01 16 26 H 0.10 1.10 8.06 -2.91 -0.02 1.07 16 27 H 0.10 1.67 8.06 -2.91 -0.02 1.64 16 28 H 0.10 1.13 7.74 -2.38 -0.02 1.11 16 29 H 0.09 1.27 8.08 -2.39 -0.02 1.25 16 30 H 0.15 2.09 8.06 -2.91 -0.02 2.07 16 31 H 0.15 2.54 8.06 -2.91 -0.02 2.52 16 32 H 0.12 3.63 5.63 -2.91 -0.02 3.62 16 33 H 0.07 2.78 8.14 -2.38 -0.02 2.76 16 34 H 0.10 3.21 8.14 -2.38 -0.02 3.19 16 35 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 36 H 0.08 4.67 5.87 -2.39 -0.01 4.65 16 37 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 38 H 0.02 1.11 8.06 -2.39 -0.02 1.09 16 39 H 0.03 1.35 7.82 -2.39 -0.02 1.33 16 40 H 0.13 3.24 8.06 -2.91 -0.02 3.22 16 Total: -1.00 -65.86 330.07 5.01 -60.85 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: 1.01 Total: 15.24 kcal Atomic # 6 Polarization: -24.78 SS G_CDS: 5.02 Total: -19.76 kcal Atomic # 7 Polarization: -89.85 SS G_CDS: -2.13 Total: -91.99 kcal Atomic # 8 Polarization: -11.38 SS G_CDS: -0.91 Total: -12.29 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 2.03 Total: 47.95 kcal Total: -65.86 5.01 -60.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231015090.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.651 kcal (2) G-P(sol) polarization free energy of solvation -65.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.849 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds