Wall clock time and date at job start Mon Mar 30 2020 01:13:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50696 * 120.00118 * 2 1 4 4 C 1.50702 * 109.47415 * 125.00057 * 3 2 1 5 5 C 1.38267 * 119.94453 * 89.99902 * 4 3 2 6 6 C 1.38142 * 120.05437 * 179.97438 * 5 4 3 7 7 C 1.38731 * 119.94302 * 0.02562 * 6 5 4 8 8 O 1.35903 * 120.05487 * 179.97438 * 7 6 5 9 9 C 1.42904 * 116.99843 * 174.52038 * 8 7 6 10 10 H 1.08999 * 110.64270 * 326.89787 * 9 8 7 11 11 C 1.55161 * 110.71561 * 203.76302 * 9 8 7 12 12 C 1.54917 * 101.57782 * 206.13589 * 11 9 8 13 13 N 1.47426 * 104.83207 * 37.00827 * 12 11 9 14 14 C 1.36931 * 125.64455 * 155.90639 * 13 12 11 15 15 H 1.08002 * 119.99990 * 179.97438 * 14 13 12 16 16 C 1.38810 * 120.00207 * 359.97438 * 14 13 12 17 17 N 1.31617 * 119.99898 * 359.97438 * 16 14 13 18 18 Si 1.86810 * 119.99994 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47127 * 59.99720 * 18 16 14 20 20 H 1.48495 * 109.46995 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47035 * 299.99540 * 18 16 14 22 22 C 1.47022 * 108.70141 * 335.87318 * 13 12 11 23 23 C 1.38736 * 119.88979 * 359.97438 * 7 6 5 24 24 C 1.38144 * 119.94303 * 0.02562 * 23 7 6 25 25 H 1.07996 * 120.00019 * 0.02562 * 1 2 3 26 26 H 1.08003 * 119.99624 * 179.97438 * 1 2 3 27 27 H 1.08001 * 120.00060 * 180.02562 * 2 1 3 28 28 H 1.08999 * 109.46969 * 4.99563 * 3 2 1 29 29 H 1.09007 * 109.47382 * 244.99793 * 3 2 1 30 30 H 1.08001 * 119.97336 * 359.72699 * 5 4 3 31 31 H 1.07996 * 120.02780 * 179.97438 * 6 5 4 32 32 H 1.08995 * 111.00309 * 324.20307 * 11 9 8 33 33 H 1.08998 * 111.00575 * 88.02444 * 11 9 8 34 34 H 1.09000 * 110.36242 * 155.84606 * 12 11 9 35 35 H 1.08994 * 110.36226 * 278.16997 * 12 11 9 36 36 H 0.97001 * 119.99462 * 180.02562 * 17 16 14 37 37 H 1.09001 * 109.87860 * 241.64187 * 22 13 12 38 38 H 1.08999 * 109.88262 * 120.47934 * 22 13 12 39 39 H 1.08000 * 120.02498 * 180.02562 * 23 7 6 40 40 H 1.07998 * 119.96992 * 179.97438 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0205 1.3327 1.1639 5 6 4.3087 0.8546 1.0097 6 6 5.1879 0.8793 2.0748 7 6 4.7773 1.3838 3.3002 8 8 5.6402 1.4088 4.3497 9 6 5.1902 2.0507 5.5445 10 1 4.5305 2.8853 5.3072 11 6 6.3947 2.5287 6.3979 12 6 5.7848 2.5324 7.8220 13 7 4.8894 1.3616 7.8521 14 6 4.4976 0.6854 8.9765 15 1 3.8356 -0.1639 8.8928 16 6 4.9511 1.0915 10.2240 17 7 5.7581 2.1262 10.3261 18 14 4.4159 0.1695 11.7580 19 1 4.8515 -1.2469 11.6615 20 1 5.0343 0.7967 12.9535 21 1 2.9368 0.2254 11.8784 22 6 4.4864 1.0407 6.4751 23 6 3.4842 1.8630 3.4523 24 6 2.6087 1.8360 2.3840 25 1 -0.5400 0.9353 -0.0004 26 1 -0.5400 -0.9354 -0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 1.3586 2.1316 0.0895 29 1 2.6214 1.4026 -0.9314 30 1 4.6265 0.4578 0.0568 31 1 6.1938 0.5053 1.9540 32 1 7.2248 1.8256 6.3303 33 1 6.7087 3.5302 6.1041 34 1 6.5699 2.4290 8.5710 35 1 5.2177 3.4480 7.9893 36 1 6.0753 2.4097 11.1978 37 1 3.4052 1.1346 6.3740 38 1 4.7975 0.0266 6.2245 39 1 3.1623 2.2566 4.4051 40 1 1.6019 2.2085 2.5020 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233596483.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:38 Heat of formation + Delta-G solvation = 31.040623 kcal Electronic energy + Delta-G solvation = -20229.732955 eV Core-core repulsion = 17203.916687 eV Total energy + Delta-G solvation = -3025.816268 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.12822 -38.21575 -36.32631 -34.77132 -32.35075 -30.96226 -30.53735 -29.25210 -27.42469 -26.02542 -24.50743 -22.85816 -21.58152 -20.26147 -20.18988 -19.76159 -18.00692 -17.04020 -15.93675 -15.72621 -15.16512 -14.87992 -14.70826 -14.16166 -13.96937 -13.78561 -13.63928 -13.37482 -12.90083 -12.50136 -12.25274 -11.92973 -11.80959 -11.62095 -11.51106 -11.20560 -11.02442 -10.87899 -10.73080 -10.39704 -10.22268 -10.04367 -9.82568 -9.62442 -9.54894 -8.93449 -8.69608 -7.90379 -6.90268 -5.69838 -3.12225 1.40894 1.47309 2.12454 3.39354 3.42850 3.44315 3.51641 3.81394 4.46391 4.70709 4.87138 4.88166 4.97349 5.05414 5.18796 5.27048 5.32466 5.40845 5.44104 5.54497 5.58859 5.64932 5.69070 5.76078 5.83088 6.06963 6.22949 6.32213 6.38432 6.41096 6.47556 6.48386 6.52884 6.61449 6.63108 6.67530 6.94100 7.41339 7.57239 7.72467 7.81105 8.29699 9.16717 9.76982 10.40352 11.34487 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.027359 B = 0.003554 C = 0.003267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.175135 B = 7875.478829 C = 8569.737821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.143 4.143 3 C -0.048 4.048 4 C -0.130 4.130 5 C -0.079 4.079 6 C -0.157 4.157 7 C 0.139 3.861 8 O -0.305 6.305 9 C 0.069 3.931 10 H 0.077 0.923 11 C -0.136 4.136 12 C 0.153 3.847 13 N -0.601 5.601 14 C -0.225 4.225 15 H 0.078 0.922 16 C -0.010 4.010 17 N -0.924 5.924 18 Si 0.917 3.083 19 H -0.284 1.284 20 H -0.289 1.289 21 H -0.285 1.285 22 C 0.120 3.880 23 C -0.205 4.205 24 C -0.073 4.073 25 H 0.095 0.905 26 H 0.096 0.904 27 H 0.108 0.892 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.124 0.876 31 H 0.128 0.872 32 H 0.073 0.927 33 H 0.066 0.934 34 H 0.114 0.886 35 H 0.016 0.984 36 H 0.254 0.746 37 H 0.025 0.975 38 H 0.035 0.965 39 H 0.132 0.868 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.844 0.030 -19.655 20.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.161 4.161 3 C -0.085 4.085 4 C -0.130 4.130 5 C -0.097 4.097 6 C -0.176 4.176 7 C 0.093 3.907 8 O -0.217 6.217 9 C 0.013 3.987 10 H 0.095 0.905 11 C -0.175 4.175 12 C 0.028 3.972 13 N -0.328 5.328 14 C -0.353 4.353 15 H 0.096 0.904 16 C -0.205 4.205 17 N -0.572 5.572 18 Si 0.748 3.252 19 H -0.211 1.211 20 H -0.215 1.215 21 H -0.211 1.211 22 C -0.007 4.007 23 C -0.224 4.224 24 C -0.091 4.091 25 H 0.114 0.886 26 H 0.114 0.886 27 H 0.126 0.874 28 H 0.091 0.909 29 H 0.097 0.903 30 H 0.142 0.858 31 H 0.146 0.854 32 H 0.092 0.908 33 H 0.085 0.915 34 H 0.131 0.869 35 H 0.034 0.966 36 H 0.065 0.935 37 H 0.043 0.957 38 H 0.053 0.947 39 H 0.150 0.850 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -4.615 -0.034 -19.388 19.930 hybrid contribution -0.580 -0.404 0.918 1.158 sum -5.194 -0.439 -18.470 19.192 Atomic orbital electron populations 1.23830 0.95889 1.01794 1.02060 1.22928 0.95873 0.98324 0.99014 1.19659 0.96870 0.95629 0.96317 1.19552 0.94802 1.03439 0.95236 1.20756 0.92648 0.98295 0.98013 1.20412 1.01038 1.05371 0.90774 1.19145 0.89073 0.94430 0.88039 1.86163 1.40857 1.73898 1.20816 1.23685 0.98445 0.94633 0.81973 0.90488 1.23211 0.96639 1.00120 0.97523 1.21999 0.95002 0.88692 0.91513 1.44371 1.55003 1.33508 0.99954 1.19045 1.23692 1.08958 0.83592 0.90411 1.24799 0.99902 0.98245 0.97584 1.69748 1.37253 1.27364 1.22835 0.86109 0.77993 0.78946 0.82197 1.21064 1.21484 1.21144 1.21683 0.96116 0.96405 0.86471 1.21402 0.93789 1.06466 1.00752 1.20782 0.98829 0.97655 0.91833 0.88647 0.88567 0.87368 0.90859 0.90304 0.85790 0.85390 0.90797 0.91528 0.86850 0.96572 0.93533 0.95672 0.94691 0.85009 0.86175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.63 14.32 29.02 0.42 -1.22 16 2 C -0.14 -1.27 9.50 -36.03 -0.34 -1.62 16 3 C -0.05 -0.42 5.78 -29.04 -0.17 -0.59 16 4 C -0.13 -1.48 5.12 -104.60 -0.54 -2.01 16 5 C -0.08 -0.90 9.69 -39.61 -0.38 -1.29 16 6 C -0.16 -2.13 9.99 -39.43 -0.39 -2.52 16 7 C 0.14 2.20 6.67 -39.22 -0.26 1.94 16 8 O -0.30 -5.48 9.86 -19.44 -0.19 -5.67 16 9 C 0.07 1.30 2.74 -24.90 -0.07 1.23 16 10 H 0.08 1.34 6.26 -51.93 -0.33 1.02 16 11 C -0.14 -2.68 6.81 -24.58 -0.17 -2.85 16 12 C 0.15 3.72 5.89 -2.52 -0.01 3.70 16 13 N -0.60 -15.72 3.39 -170.08 -0.58 -16.30 16 14 C -0.22 -6.35 10.27 -15.06 -0.15 -6.50 16 15 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 16 C -0.01 -0.28 5.49 -17.43 -0.10 -0.37 16 17 N -0.92 -26.81 10.09 55.49 0.56 -26.25 16 18 Si 0.92 22.09 29.55 -169.99 -5.02 17.07 16 19 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 22 C 0.12 2.63 6.80 -3.07 -0.02 2.61 16 23 C -0.21 -3.03 8.90 -39.43 -0.35 -3.38 16 24 C -0.07 -0.92 9.69 -39.61 -0.38 -1.30 16 25 H 0.10 0.71 7.84 -52.49 -0.41 0.30 16 26 H 0.10 0.71 8.06 -52.48 -0.42 0.29 16 27 H 0.11 0.95 8.06 -52.49 -0.42 0.52 16 28 H 0.07 0.59 7.74 -51.93 -0.40 0.19 16 29 H 0.08 0.59 8.08 -51.93 -0.42 0.17 16 30 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 31 H 0.13 1.57 8.06 -52.49 -0.42 1.15 16 32 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 33 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.11 3.08 5.87 -51.93 -0.31 2.77 16 35 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 37 H 0.03 0.54 7.80 -51.93 -0.41 0.14 16 38 H 0.04 0.80 8.06 -51.93 -0.42 0.38 16 39 H 0.13 1.98 5.62 -52.49 -0.30 1.68 16 40 H 0.12 1.30 8.06 -52.49 -0.42 0.87 16 LS Contribution 330.02 15.07 4.97 4.97 Total: -1.00 -30.14 330.02 -9.10 -39.24 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: -5.91 Total: 1.11 kcal Atomic # 6 Polarization: -11.24 SS G_CDS: -2.93 Total: -14.17 kcal Atomic # 7 Polarization: -42.53 SS G_CDS: -0.02 Total: -42.55 kcal Atomic # 8 Polarization: -5.48 SS G_CDS: -0.19 Total: -5.67 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -30.14 -9.10 -39.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233596483.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.280 kcal (2) G-P(sol) polarization free energy of solvation -30.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.239 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds