Wall clock time and date at job start Mon Mar 30 2020 01:13:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50696 * 120.00118 * 2 1 4 4 C 1.50702 * 109.47415 * 125.00057 * 3 2 1 5 5 C 1.38267 * 119.94453 * 89.99902 * 4 3 2 6 6 C 1.38142 * 120.05437 * 179.97438 * 5 4 3 7 7 C 1.38731 * 119.94302 * 0.02562 * 6 5 4 8 8 O 1.35903 * 120.05487 * 179.97438 * 7 6 5 9 9 C 1.42904 * 116.99843 * 174.52038 * 8 7 6 10 10 H 1.08999 * 110.64270 * 326.89787 * 9 8 7 11 11 C 1.55161 * 110.71561 * 203.76302 * 9 8 7 12 12 C 1.54917 * 101.57782 * 206.13589 * 11 9 8 13 13 N 1.47426 * 104.83207 * 37.00827 * 12 11 9 14 14 C 1.36931 * 125.64455 * 155.90639 * 13 12 11 15 15 H 1.08002 * 119.99990 * 179.97438 * 14 13 12 16 16 C 1.38810 * 120.00207 * 359.97438 * 14 13 12 17 17 N 1.31617 * 119.99898 * 359.97438 * 16 14 13 18 18 Si 1.86810 * 119.99994 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47127 * 59.99720 * 18 16 14 20 20 H 1.48495 * 109.46995 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47035 * 299.99540 * 18 16 14 22 22 C 1.47022 * 108.70141 * 335.87318 * 13 12 11 23 23 C 1.38736 * 119.88979 * 359.97438 * 7 6 5 24 24 C 1.38144 * 119.94303 * 0.02562 * 23 7 6 25 25 H 1.07996 * 120.00019 * 0.02562 * 1 2 3 26 26 H 1.08003 * 119.99624 * 179.97438 * 1 2 3 27 27 H 1.08001 * 120.00060 * 180.02562 * 2 1 3 28 28 H 1.08999 * 109.46969 * 4.99563 * 3 2 1 29 29 H 1.09007 * 109.47382 * 244.99793 * 3 2 1 30 30 H 1.08001 * 119.97336 * 359.72699 * 5 4 3 31 31 H 1.07996 * 120.02780 * 179.97438 * 6 5 4 32 32 H 1.08995 * 111.00309 * 324.20307 * 11 9 8 33 33 H 1.08998 * 111.00575 * 88.02444 * 11 9 8 34 34 H 1.09000 * 110.36242 * 155.84606 * 12 11 9 35 35 H 1.08994 * 110.36226 * 278.16997 * 12 11 9 36 36 H 0.97001 * 119.99462 * 180.02562 * 17 16 14 37 37 H 1.09001 * 109.87860 * 241.64187 * 22 13 12 38 38 H 1.08999 * 109.88262 * 120.47934 * 22 13 12 39 39 H 1.08000 * 120.02498 * 180.02562 * 23 7 6 40 40 H 1.07998 * 119.96992 * 179.97438 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0205 1.3327 1.1639 5 6 4.3087 0.8546 1.0097 6 6 5.1879 0.8793 2.0748 7 6 4.7773 1.3838 3.3002 8 8 5.6402 1.4088 4.3497 9 6 5.1902 2.0507 5.5445 10 1 4.5305 2.8853 5.3072 11 6 6.3947 2.5287 6.3979 12 6 5.7848 2.5324 7.8220 13 7 4.8894 1.3616 7.8521 14 6 4.4976 0.6854 8.9765 15 1 3.8356 -0.1639 8.8928 16 6 4.9511 1.0915 10.2240 17 7 5.7581 2.1262 10.3261 18 14 4.4159 0.1695 11.7580 19 1 4.8515 -1.2469 11.6615 20 1 5.0343 0.7967 12.9535 21 1 2.9368 0.2254 11.8784 22 6 4.4864 1.0407 6.4751 23 6 3.4842 1.8630 3.4523 24 6 2.6087 1.8360 2.3840 25 1 -0.5400 0.9353 -0.0004 26 1 -0.5400 -0.9354 -0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 1.3586 2.1316 0.0895 29 1 2.6214 1.4026 -0.9314 30 1 4.6265 0.4578 0.0568 31 1 6.1938 0.5053 1.9540 32 1 7.2248 1.8256 6.3303 33 1 6.7087 3.5302 6.1041 34 1 6.5699 2.4290 8.5710 35 1 5.2177 3.4480 7.9893 36 1 6.0753 2.4097 11.1978 37 1 3.4052 1.1346 6.3740 38 1 4.7975 0.0266 6.2245 39 1 3.1623 2.2566 4.4051 40 1 1.6019 2.2085 2.5020 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233596483.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:38 Heat of formation + Delta-G solvation = 15.746331 kcal Electronic energy + Delta-G solvation = -20230.396165 eV Core-core repulsion = 17203.916687 eV Total energy + Delta-G solvation = -3026.479478 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.33211 -39.48838 -37.88753 -35.61271 -34.29946 -32.00334 -31.62453 -30.98323 -29.13480 -27.06712 -26.32170 -23.99167 -22.71586 -22.11806 -21.48532 -20.55269 -19.27225 -19.03376 -17.12554 -16.85240 -16.60853 -16.58279 -15.77437 -15.52831 -15.32998 -15.00432 -14.59646 -14.42720 -14.29761 -14.21063 -13.67872 -13.41989 -13.06491 -12.97503 -12.86945 -12.67330 -12.47051 -12.18845 -12.08637 -12.00718 -11.92524 -11.69376 -11.47199 -11.38429 -10.79388 -10.19746 -9.93242 -9.02582 -8.95522 -7.82825 -5.28909 0.41006 0.45722 1.45658 1.47404 1.49226 1.55750 2.17353 2.48116 2.80864 3.27879 3.57999 3.64458 3.87144 3.91273 3.93865 4.02436 4.07782 4.21876 4.30621 4.46318 4.46975 4.52394 4.57502 4.70279 4.83240 4.84383 4.92822 4.94793 5.03063 5.12052 5.15113 5.36244 5.39846 5.46083 5.52910 5.65935 5.71431 5.77439 5.90527 5.96927 6.23421 6.49861 7.04215 7.69008 8.32231 9.19293 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.027359 B = 0.003554 C = 0.003267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.175135 B = 7875.478829 C = 8569.737821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.157 4.157 3 C -0.045 4.045 4 C -0.121 4.121 5 C -0.075 4.075 6 C -0.162 4.162 7 C 0.104 3.896 8 O -0.317 6.317 9 C 0.087 3.913 10 H 0.093 0.907 11 C -0.123 4.123 12 C 0.155 3.845 13 N -0.623 5.623 14 C -0.249 4.249 15 H 0.079 0.921 16 C -0.062 4.062 17 N -0.947 5.947 18 Si 0.985 3.015 19 H -0.277 1.277 20 H -0.289 1.289 21 H -0.277 1.277 22 C 0.119 3.881 23 C -0.218 4.218 24 C -0.080 4.080 25 H 0.104 0.896 26 H 0.102 0.898 27 H 0.107 0.893 28 H 0.082 0.918 29 H 0.097 0.903 30 H 0.156 0.844 31 H 0.137 0.863 32 H 0.069 0.931 33 H 0.097 0.903 34 H 0.083 0.917 35 H 0.001 0.999 36 H 0.251 0.749 37 H 0.029 0.971 38 H 0.023 0.977 39 H 0.122 0.878 40 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.797 -0.265 -21.780 22.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.175 4.175 3 C -0.082 4.082 4 C -0.121 4.121 5 C -0.093 4.093 6 C -0.181 4.181 7 C 0.059 3.941 8 O -0.230 6.230 9 C 0.031 3.969 10 H 0.110 0.890 11 C -0.162 4.162 12 C 0.030 3.970 13 N -0.351 5.351 14 C -0.377 4.377 15 H 0.097 0.903 16 C -0.255 4.255 17 N -0.596 5.596 18 Si 0.812 3.188 19 H -0.203 1.203 20 H -0.215 1.215 21 H -0.203 1.203 22 C -0.006 4.006 23 C -0.237 4.237 24 C -0.098 4.098 25 H 0.122 0.878 26 H 0.120 0.880 27 H 0.125 0.875 28 H 0.101 0.899 29 H 0.115 0.885 30 H 0.174 0.826 31 H 0.155 0.845 32 H 0.088 0.912 33 H 0.116 0.884 34 H 0.101 0.899 35 H 0.019 0.981 36 H 0.061 0.939 37 H 0.047 0.953 38 H 0.041 0.959 39 H 0.140 0.860 40 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -5.578 -0.336 -21.552 22.265 hybrid contribution -0.365 -0.348 1.434 1.520 sum -5.943 -0.684 -20.119 20.989 Atomic orbital electron populations 1.24011 0.95885 1.02557 1.00976 1.22969 0.96171 0.98330 1.00001 1.19706 0.96660 0.95948 0.95844 1.19917 0.95256 1.01416 0.95520 1.21139 0.92244 0.97272 0.98605 1.20674 1.01999 1.04951 0.90445 1.19453 0.89510 0.96882 0.88215 1.86112 1.41580 1.74447 1.20872 1.23335 0.97565 0.93996 0.82033 0.88957 1.23023 0.96479 1.01925 0.94726 1.21782 0.93817 0.87609 0.93742 1.44661 1.55538 1.33816 1.01051 1.19407 1.24007 1.09440 0.84861 0.90334 1.25668 1.00107 0.99238 1.00448 1.69991 1.38001 1.28508 1.23116 0.85068 0.77782 0.77783 0.78167 1.20321 1.21499 1.20294 1.21763 0.96634 0.96794 0.85445 1.21420 0.93968 1.07116 1.01146 1.21038 0.99288 0.97699 0.91805 0.87819 0.88017 0.87457 0.89929 0.88488 0.82604 0.84529 0.91223 0.88415 0.89916 0.98116 0.93948 0.95291 0.95902 0.86025 0.84542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.73 14.32 67.78 0.97 -1.76 16 2 C -0.16 -2.34 9.50 25.65 0.24 -2.10 16 3 C -0.04 -0.63 5.78 29.10 0.17 -0.47 16 4 C -0.12 -2.40 5.12 -19.85 -0.10 -2.51 16 5 C -0.07 -1.49 9.69 22.25 0.22 -1.28 16 6 C -0.16 -4.11 9.99 22.36 0.22 -3.89 16 7 C 0.10 3.22 6.67 22.51 0.15 3.37 16 8 O -0.32 -11.31 9.86 -92.46 -0.91 -12.23 16 9 C 0.09 3.28 2.74 31.78 0.09 3.37 16 10 H 0.09 3.18 6.26 -2.39 -0.01 3.16 16 11 C -0.12 -4.83 6.81 31.99 0.22 -4.62 16 12 C 0.16 7.78 5.89 86.86 0.51 8.29 16 13 N -0.62 -33.48 3.39 -692.00 -2.35 -35.83 16 14 C -0.25 -14.36 10.27 84.03 0.86 -13.50 16 15 H 0.08 4.37 7.83 -2.91 -0.02 4.35 16 16 C -0.06 -3.54 5.49 84.86 0.47 -3.07 16 17 N -0.95 -56.41 10.09 21.65 0.22 -56.19 16 18 Si 0.98 45.89 29.55 68.60 2.03 47.91 16 19 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 20 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 21 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 22 C 0.12 5.35 6.80 86.73 0.59 5.94 16 23 C -0.22 -6.27 8.90 22.37 0.20 -6.07 16 24 C -0.08 -1.88 9.69 22.25 0.22 -1.66 16 25 H 0.10 1.24 7.84 -2.91 -0.02 1.22 16 26 H 0.10 1.27 8.06 -2.91 -0.02 1.25 16 27 H 0.11 1.61 8.06 -2.91 -0.02 1.58 16 28 H 0.08 1.04 7.74 -2.39 -0.02 1.03 16 29 H 0.10 1.05 8.08 -2.38 -0.02 1.03 16 30 H 0.16 2.08 8.06 -2.91 -0.02 2.06 16 31 H 0.14 3.13 8.06 -2.91 -0.02 3.11 16 32 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 33 H 0.10 3.21 8.14 -2.39 -0.02 3.19 16 34 H 0.08 4.67 5.87 -2.39 -0.01 4.66 16 35 H 0.00 0.04 8.14 -2.39 -0.02 0.03 16 36 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 37 H 0.03 1.27 7.80 -2.39 -0.02 1.25 16 38 H 0.02 1.07 8.06 -2.39 -0.02 1.05 16 39 H 0.12 3.65 5.62 -2.91 -0.02 3.64 16 40 H 0.14 2.66 8.06 -2.91 -0.02 2.63 16 Total: -1.00 -65.86 330.02 5.01 -60.84 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: 1.01 Total: 15.43 kcal Atomic # 6 Polarization: -24.96 SS G_CDS: 5.02 Total: -19.94 kcal Atomic # 7 Polarization: -89.89 SS G_CDS: -2.13 Total: -92.02 kcal Atomic # 8 Polarization: -11.31 SS G_CDS: -0.91 Total: -12.23 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.91 kcal Total: -65.86 5.01 -60.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233596483.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.589 kcal (2) G-P(sol) polarization free energy of solvation -65.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.843 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds