Wall clock time and date at job start Mon Mar 30 2020 01:12:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50707 * 119.99773 * 2 1 4 4 C 1.50696 * 109.46912 * 125.00407 * 3 2 1 5 5 C 1.38269 * 119.94702 * 89.99736 * 4 3 2 6 6 C 1.38145 * 120.05611 * 179.97438 * 5 4 3 7 7 C 1.38733 * 119.94613 * 0.02562 * 6 5 4 8 8 O 1.35903 * 120.05821 * 180.02562 * 7 6 5 9 9 C 1.42899 * 116.99481 * 5.71890 * 8 7 6 10 10 C 1.53522 * 114.16319 * 156.75104 * 9 8 7 11 11 N 1.47479 * 87.93053 * 87.81277 * 10 9 8 12 12 C 1.46907 * 110.99724 * 138.70260 * 11 10 9 13 13 C 1.50701 * 109.47018 * 169.99816 * 12 11 10 14 14 H 1.07994 * 119.99880 * 359.97438 * 13 12 11 15 15 C 1.37873 * 120.00063 * 180.02562 * 13 12 11 16 16 N 1.31514 * 119.99834 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 120.00155 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.47137 * 179.97438 * 17 15 13 19 19 H 1.48497 * 109.47320 * 299.99947 * 17 15 13 20 20 H 1.48502 * 109.47213 * 59.99788 * 17 15 13 21 21 C 1.47471 * 87.83993 * 27.00812 * 11 10 9 22 22 C 1.38735 * 119.88832 * 0.27118 * 7 6 5 23 23 C 1.38151 * 119.94110 * 359.47348 * 22 7 6 24 24 H 1.08005 * 120.00413 * 179.97438 * 1 2 3 25 25 H 1.08010 * 120.00489 * 359.97438 * 1 2 3 26 26 H 1.07996 * 120.00030 * 179.97438 * 2 1 3 27 27 H 1.08995 * 109.47049 * 5.00376 * 3 2 1 28 28 H 1.09002 * 109.46942 * 245.00051 * 3 2 1 29 29 H 1.07997 * 119.96889 * 359.97438 * 5 4 3 30 30 H 1.07992 * 120.02865 * 179.97438 * 6 5 4 31 31 H 1.08994 * 113.26195 * 23.80059 * 9 8 7 32 32 H 1.08996 * 113.47329 * 333.04215 * 10 9 8 33 33 H 1.09001 * 113.46674 * 202.58069 * 10 9 8 34 34 H 1.08996 * 109.47104 * 49.99664 * 12 11 10 35 35 H 1.08997 * 109.46896 * 289.99467 * 12 11 10 36 36 H 0.97002 * 120.00501 * 179.97438 * 16 15 13 37 37 H 1.09004 * 113.47622 * 87.75306 * 21 11 10 38 38 H 1.08999 * 113.47770 * 218.22309 * 21 11 10 39 39 H 1.07992 * 120.02884 * 179.72809 * 22 7 6 40 40 H 1.08000 * 119.96895 * 180.23327 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 3.0204 1.3327 1.1638 5 6 4.3086 0.8546 1.0096 6 6 5.1879 0.8792 2.0748 7 6 4.7773 1.3837 3.3002 8 8 5.6406 1.4095 4.3495 9 6 6.9903 1.0192 4.0887 10 6 8.0108 1.5784 5.0901 11 7 7.7536 0.3949 5.9315 12 6 9.0031 -0.1284 6.5000 13 6 8.6839 -1.1727 7.5385 14 1 7.6558 -1.4224 7.7549 15 6 9.7044 -1.8086 8.2131 16 7 10.9565 -1.5042 7.9499 17 14 9.3088 -3.1026 9.5009 18 1 10.5718 -3.6316 10.0754 19 1 8.4907 -2.4931 10.5800 20 1 8.5493 -4.2122 8.8707 21 6 7.3880 -0.3312 4.7011 22 6 3.4823 1.8572 3.4541 23 6 2.6084 1.8352 2.3843 24 1 -0.5401 -0.9353 -0.0004 25 1 -0.5401 0.9353 0.0004 26 1 1.8499 -0.9353 0.0004 27 1 1.3585 2.1316 0.0896 28 1 2.6212 1.4027 -0.9314 29 1 4.6276 0.4616 0.0556 30 1 6.1938 0.5053 1.9540 31 1 7.2786 1.1379 3.0444 32 1 7.6981 2.5153 5.5511 33 1 9.0267 1.6196 4.6972 34 1 9.5607 0.6858 6.9628 35 1 9.6035 -0.5755 5.7077 36 1 11.6745 -1.9512 8.4247 37 1 8.2378 -0.7996 4.2046 38 1 6.5476 -1.0127 4.8326 39 1 3.1590 2.2463 4.4081 40 1 1.6014 2.2071 2.5026 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233597406.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:58 Heat of formation + Delta-G solvation = 46.921052 kcal Electronic energy + Delta-G solvation = -19762.385411 eV Core-core repulsion = 16737.257771 eV Total energy + Delta-G solvation = -3025.127641 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.47611 -39.08788 -37.03853 -34.83054 -32.87003 -31.13178 -30.60641 -29.22998 -26.21813 -25.60304 -25.17755 -23.12486 -21.89610 -21.31929 -20.00043 -19.47436 -17.97124 -16.37489 -16.11231 -15.70699 -15.46883 -15.11754 -14.73809 -14.55038 -14.23478 -13.93242 -13.67767 -13.41069 -13.33007 -12.86218 -12.47160 -12.26029 -11.97476 -11.75698 -11.51867 -11.37482 -11.26672 -10.92489 -10.77305 -10.49087 -10.33614 -10.02475 -9.67835 -9.61310 -9.28782 -9.03420 -8.44022 -8.00502 -7.86926 -6.04460 -4.05528 1.31142 1.37036 2.05994 3.25466 3.34243 3.37336 3.41594 3.70794 4.42161 4.61746 4.67169 4.78702 4.79887 4.80859 4.86181 4.98822 5.16125 5.18488 5.30729 5.32156 5.42740 5.56363 5.63957 5.70957 5.81659 5.85644 5.97034 6.05929 6.14347 6.23216 6.31923 6.34679 6.39454 6.45201 6.58728 6.59463 6.80770 7.12168 7.61417 7.63217 7.84456 8.08301 8.44156 9.01966 9.58653 11.06634 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.030697 B = 0.003007 C = 0.002876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.911307 B = 9310.209898 C = 9732.166459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.143 4.143 3 C -0.048 4.048 4 C -0.129 4.129 5 C -0.076 4.076 6 C -0.209 4.209 7 C 0.137 3.863 8 O -0.276 6.276 9 C 0.044 3.956 10 C 0.000 4.000 11 N -0.456 5.456 12 C 0.156 3.844 13 C -0.505 4.505 14 H 0.063 0.937 15 C 0.054 3.946 16 N -0.901 5.901 17 Si 0.900 3.100 18 H -0.288 1.288 19 H -0.275 1.275 20 H -0.277 1.277 21 C -0.006 4.006 22 C -0.153 4.153 23 C -0.075 4.075 24 H 0.096 0.904 25 H 0.095 0.905 26 H 0.109 0.891 27 H 0.073 0.927 28 H 0.079 0.921 29 H 0.121 0.879 30 H 0.131 0.869 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.078 0.922 34 H 0.030 0.970 35 H 0.004 0.996 36 H 0.262 0.738 37 H 0.076 0.924 38 H 0.082 0.918 39 H 0.130 0.870 40 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.464 6.433 -17.432 24.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.161 4.161 3 C -0.085 4.085 4 C -0.129 4.129 5 C -0.094 4.094 6 C -0.228 4.228 7 C 0.091 3.909 8 O -0.188 6.188 9 C -0.013 4.013 10 C -0.129 4.129 11 N -0.179 5.179 12 C 0.030 3.970 13 C -0.543 4.543 14 H 0.081 0.919 15 C -0.147 4.147 16 N -0.541 5.541 17 Si 0.728 3.272 18 H -0.213 1.213 19 H -0.201 1.201 20 H -0.202 1.202 21 C -0.135 4.135 22 C -0.172 4.172 23 C -0.093 4.093 24 H 0.115 0.885 25 H 0.114 0.886 26 H 0.127 0.873 27 H 0.092 0.908 28 H 0.097 0.903 29 H 0.139 0.861 30 H 0.149 0.851 31 H 0.103 0.897 32 H 0.103 0.897 33 H 0.096 0.904 34 H 0.048 0.952 35 H 0.022 0.978 36 H 0.072 0.928 37 H 0.094 0.906 38 H 0.100 0.900 39 H 0.148 0.852 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -15.730 6.462 -16.556 23.734 hybrid contribution 0.814 -1.021 0.054 1.307 sum -14.916 5.440 -16.502 22.900 Atomic orbital electron populations 1.23830 0.95868 1.01798 1.02067 1.22932 0.95883 0.98329 0.99001 1.19665 0.96867 0.95650 0.96341 1.19571 0.94764 1.03225 0.95332 1.20785 0.92689 0.97714 0.98175 1.21310 1.01451 1.06652 0.93361 1.19176 0.90575 0.94284 0.86838 1.86192 1.19111 1.81399 1.32139 1.23710 0.80629 0.98344 0.98603 1.24005 0.96120 0.98889 0.93912 1.69091 1.30966 1.01814 1.16031 1.20304 0.85681 0.95737 0.95271 1.21060 0.93243 1.19963 1.20047 0.91876 1.25004 0.94922 0.97394 0.97400 1.69942 0.98663 1.42971 1.42525 0.86519 0.77428 0.81573 0.81670 1.21329 1.20098 1.20241 1.24245 1.01126 0.95426 0.92742 1.20440 0.91548 1.04933 1.00268 1.20774 0.98787 0.98077 0.91685 0.88550 0.88644 0.87346 0.90796 0.90286 0.86061 0.85134 0.89662 0.89696 0.90442 0.95162 0.97845 0.92849 0.90603 0.89990 0.85172 0.85761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.45 14.32 29.02 0.42 -1.03 16 2 C -0.14 -1.16 9.50 -36.02 -0.34 -1.50 16 3 C -0.05 -0.38 5.79 -29.03 -0.17 -0.55 16 4 C -0.13 -1.32 5.12 -104.60 -0.54 -1.85 16 5 C -0.08 -0.81 9.69 -39.60 -0.38 -1.20 16 6 C -0.21 -2.63 9.03 -39.43 -0.36 -2.98 16 7 C 0.14 1.98 6.68 -39.21 -0.26 1.72 16 8 O -0.28 -4.67 10.19 -19.43 -0.20 -4.86 16 9 C 0.04 0.70 4.06 -26.19 -0.11 0.60 16 10 C 0.00 0.00 7.52 -7.54 -0.06 -0.05 16 11 N -0.46 -10.23 6.32 -246.11 -1.55 -11.79 16 12 C 0.16 4.11 4.57 -4.97 -0.02 4.09 16 13 C -0.50 -14.65 9.39 -34.44 -0.32 -14.98 16 14 H 0.06 1.85 7.81 -52.49 -0.41 1.44 16 15 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 16 N -0.90 -26.98 13.29 55.43 0.74 -26.24 16 17 Si 0.90 22.09 29.54 -169.99 -5.02 17.07 16 18 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 19 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 21 C -0.01 -0.11 7.56 -7.55 -0.06 -0.17 16 22 C -0.15 -1.97 9.99 -39.43 -0.39 -2.37 16 23 C -0.08 -0.81 9.69 -39.60 -0.38 -1.20 16 24 H 0.10 0.63 8.06 -52.48 -0.42 0.21 16 25 H 0.10 0.61 7.84 -52.48 -0.41 0.19 16 26 H 0.11 0.88 8.06 -52.49 -0.42 0.46 16 27 H 0.07 0.51 7.74 -51.93 -0.40 0.11 16 28 H 0.08 0.54 8.08 -51.93 -0.42 0.12 16 29 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 30 H 0.13 1.51 5.89 -52.49 -0.31 1.20 16 31 H 0.09 1.12 5.90 -51.93 -0.31 0.81 16 32 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 33 H 0.08 1.29 7.91 -51.93 -0.41 0.88 16 34 H 0.03 0.85 8.08 -51.93 -0.42 0.43 16 35 H 0.00 0.10 7.30 -51.93 -0.38 -0.28 16 36 H 0.26 7.41 8.31 -40.82 -0.34 7.08 16 37 H 0.08 1.38 7.42 -51.93 -0.39 1.00 16 38 H 0.08 1.59 8.14 -51.93 -0.42 1.16 16 39 H 0.13 1.58 8.06 -52.49 -0.42 1.15 16 40 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 LS Contribution 337.87 15.07 5.09 5.09 Total: -1.00 -31.59 337.87 -9.97 -41.55 By element: Atomic # 1 Polarization: 5.13 SS G_CDS: -5.95 Total: -0.82 kcal Atomic # 6 Polarization: -16.93 SS G_CDS: -3.07 Total: -20.00 kcal Atomic # 7 Polarization: -37.21 SS G_CDS: -0.82 Total: -38.03 kcal Atomic # 8 Polarization: -4.67 SS G_CDS: -0.20 Total: -4.86 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -31.59 -9.97 -41.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233597406.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.474 kcal (2) G-P(sol) polarization free energy of solvation -31.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.553 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds