Wall clock time and date at job start Mon Mar 30 2020 01:12:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50707 * 119.99773 * 2 1 4 4 C 1.50696 * 109.46912 * 125.00407 * 3 2 1 5 5 C 1.38269 * 119.94702 * 89.99736 * 4 3 2 6 6 C 1.38145 * 120.05611 * 179.97438 * 5 4 3 7 7 C 1.38733 * 119.94613 * 0.02562 * 6 5 4 8 8 O 1.35903 * 120.05821 * 180.02562 * 7 6 5 9 9 C 1.42899 * 116.99481 * 5.71890 * 8 7 6 10 10 C 1.53522 * 114.16319 * 156.75104 * 9 8 7 11 11 N 1.47479 * 87.93053 * 87.81277 * 10 9 8 12 12 C 1.46907 * 110.99724 * 138.70260 * 11 10 9 13 13 C 1.50701 * 109.47018 * 169.99816 * 12 11 10 14 14 H 1.07994 * 119.99880 * 359.97438 * 13 12 11 15 15 C 1.37873 * 120.00063 * 180.02562 * 13 12 11 16 16 N 1.31514 * 119.99834 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 120.00155 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.47137 * 179.97438 * 17 15 13 19 19 H 1.48497 * 109.47320 * 299.99947 * 17 15 13 20 20 H 1.48502 * 109.47213 * 59.99788 * 17 15 13 21 21 C 1.47471 * 87.83993 * 27.00812 * 11 10 9 22 22 C 1.38735 * 119.88832 * 0.27118 * 7 6 5 23 23 C 1.38151 * 119.94110 * 359.47348 * 22 7 6 24 24 H 1.08005 * 120.00413 * 179.97438 * 1 2 3 25 25 H 1.08010 * 120.00489 * 359.97438 * 1 2 3 26 26 H 1.07996 * 120.00030 * 179.97438 * 2 1 3 27 27 H 1.08995 * 109.47049 * 5.00376 * 3 2 1 28 28 H 1.09002 * 109.46942 * 245.00051 * 3 2 1 29 29 H 1.07997 * 119.96889 * 359.97438 * 5 4 3 30 30 H 1.07992 * 120.02865 * 179.97438 * 6 5 4 31 31 H 1.08994 * 113.26195 * 23.80059 * 9 8 7 32 32 H 1.08996 * 113.47329 * 333.04215 * 10 9 8 33 33 H 1.09001 * 113.46674 * 202.58069 * 10 9 8 34 34 H 1.08996 * 109.47104 * 49.99664 * 12 11 10 35 35 H 1.08997 * 109.46896 * 289.99467 * 12 11 10 36 36 H 0.97002 * 120.00501 * 179.97438 * 16 15 13 37 37 H 1.09004 * 113.47622 * 87.75306 * 21 11 10 38 38 H 1.08999 * 113.47770 * 218.22309 * 21 11 10 39 39 H 1.07992 * 120.02884 * 179.72809 * 22 7 6 40 40 H 1.08000 * 119.96895 * 180.23327 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 3.0204 1.3327 1.1638 5 6 4.3086 0.8546 1.0096 6 6 5.1879 0.8792 2.0748 7 6 4.7773 1.3837 3.3002 8 8 5.6406 1.4095 4.3495 9 6 6.9903 1.0192 4.0887 10 6 8.0108 1.5784 5.0901 11 7 7.7536 0.3949 5.9315 12 6 9.0031 -0.1284 6.5000 13 6 8.6839 -1.1727 7.5385 14 1 7.6558 -1.4224 7.7549 15 6 9.7044 -1.8086 8.2131 16 7 10.9565 -1.5042 7.9499 17 14 9.3088 -3.1026 9.5009 18 1 10.5718 -3.6316 10.0754 19 1 8.4907 -2.4931 10.5800 20 1 8.5493 -4.2122 8.8707 21 6 7.3880 -0.3312 4.7011 22 6 3.4823 1.8572 3.4541 23 6 2.6084 1.8352 2.3843 24 1 -0.5401 -0.9353 -0.0004 25 1 -0.5401 0.9353 0.0004 26 1 1.8499 -0.9353 0.0004 27 1 1.3585 2.1316 0.0896 28 1 2.6212 1.4027 -0.9314 29 1 4.6276 0.4616 0.0556 30 1 6.1938 0.5053 1.9540 31 1 7.2786 1.1379 3.0444 32 1 7.6981 2.5153 5.5511 33 1 9.0267 1.6196 4.6972 34 1 9.5607 0.6858 6.9628 35 1 9.6035 -0.5755 5.7077 36 1 11.6745 -1.9512 8.4247 37 1 8.2378 -0.7996 4.2046 38 1 6.5476 -1.0127 4.8326 39 1 3.1590 2.2463 4.4081 40 1 1.6014 2.2071 2.5026 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233597406.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:58 Heat of formation + Delta-G solvation = 27.328510 kcal Electronic energy + Delta-G solvation = -19763.235008 eV Core-core repulsion = 16737.257771 eV Total energy + Delta-G solvation = -3025.977237 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.71965 -40.25149 -38.19348 -35.57899 -35.00062 -32.08253 -31.54668 -30.91277 -27.52222 -27.01668 -26.60257 -24.39153 -23.24395 -22.57686 -20.75959 -20.56090 -19.13785 -18.54950 -17.26388 -16.99066 -16.52722 -16.42116 -16.06890 -15.76135 -15.42753 -15.10868 -14.94809 -14.57679 -14.32284 -14.11098 -13.88141 -13.61292 -13.23843 -13.07775 -12.94791 -12.65478 -12.40561 -12.31717 -12.21731 -11.93165 -11.79277 -11.47672 -11.37954 -11.23823 -10.64045 -10.19131 -9.92199 -9.62825 -8.97899 -8.25643 -6.35829 0.42202 0.46156 1.37504 1.40848 1.48121 1.49222 2.09233 2.37259 2.80133 3.06153 3.30298 3.32072 3.74635 3.90662 3.96888 4.07965 4.18873 4.28010 4.36892 4.40944 4.48393 4.49118 4.54014 4.58467 4.66466 4.83055 4.86754 4.90665 5.00236 5.04202 5.12325 5.16324 5.37424 5.45278 5.54664 5.67108 5.74924 5.78297 5.90782 5.97766 6.04907 6.41268 6.53838 6.77495 7.33573 8.85094 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.030697 B = 0.003007 C = 0.002876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.911307 B = 9310.209898 C = 9732.166459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.158 4.158 3 C -0.045 4.045 4 C -0.122 4.122 5 C -0.078 4.078 6 C -0.214 4.214 7 C 0.104 3.896 8 O -0.302 6.302 9 C 0.071 3.929 10 C -0.001 4.001 11 N -0.487 5.487 12 C 0.172 3.828 13 C -0.530 4.530 14 H 0.052 0.948 15 C 0.004 3.996 16 N -0.931 5.931 17 Si 0.969 3.031 18 H -0.277 1.277 19 H -0.271 1.271 20 H -0.268 1.268 21 C -0.009 4.009 22 C -0.167 4.167 23 C -0.077 4.077 24 H 0.101 0.899 25 H 0.106 0.894 26 H 0.104 0.896 27 H 0.086 0.914 28 H 0.092 0.908 29 H 0.146 0.854 30 H 0.138 0.862 31 H 0.122 0.878 32 H 0.087 0.913 33 H 0.091 0.909 34 H 0.004 0.996 35 H -0.011 1.011 36 H 0.267 0.733 37 H 0.082 0.918 38 H 0.071 0.929 39 H 0.128 0.872 40 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.010 6.258 -19.027 26.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.176 4.176 3 C -0.082 4.082 4 C -0.122 4.122 5 C -0.096 4.096 6 C -0.233 4.233 7 C 0.059 3.941 8 O -0.215 6.215 9 C 0.014 3.986 10 C -0.130 4.130 11 N -0.210 5.210 12 C 0.045 3.955 13 C -0.568 4.568 14 H 0.071 0.929 15 C -0.194 4.194 16 N -0.571 5.571 17 Si 0.793 3.207 18 H -0.202 1.202 19 H -0.196 1.196 20 H -0.193 1.193 21 C -0.138 4.138 22 C -0.185 4.185 23 C -0.095 4.095 24 H 0.119 0.881 25 H 0.124 0.876 26 H 0.122 0.878 27 H 0.105 0.895 28 H 0.111 0.889 29 H 0.164 0.836 30 H 0.156 0.844 31 H 0.140 0.860 32 H 0.106 0.894 33 H 0.109 0.891 34 H 0.022 0.978 35 H 0.006 0.994 36 H 0.075 0.925 37 H 0.100 0.900 38 H 0.090 0.910 39 H 0.146 0.854 40 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -17.296 6.298 -18.170 25.864 hybrid contribution 1.171 -0.928 0.452 1.561 sum -16.125 5.371 -17.717 24.551 Atomic orbital electron populations 1.24012 0.95770 1.02625 1.00766 1.22953 0.96229 0.98251 1.00201 1.19702 0.96694 0.96004 0.95773 1.19928 0.95024 1.01424 0.95844 1.21117 0.92646 0.97194 0.98666 1.21460 1.02235 1.06464 0.93133 1.19454 0.90884 0.96617 0.87132 1.86141 1.19479 1.82008 1.33901 1.23449 0.80410 0.95084 0.99689 1.24079 0.97740 0.97368 0.93846 1.68994 1.28926 1.04355 1.18724 1.19970 0.87003 0.94176 0.94341 1.21370 0.92939 1.21203 1.21336 0.92927 1.25896 0.94664 0.99463 0.99427 1.70047 0.99565 1.43995 1.43526 0.85442 0.77641 0.78787 0.78797 1.20226 1.19594 1.19320 1.24276 1.00953 0.96884 0.91731 1.20632 0.91559 1.05294 1.01062 1.21065 0.99432 0.97658 0.91296 0.88103 0.87553 0.87824 0.89539 0.88947 0.83595 0.84414 0.86044 0.89420 0.89078 0.97813 0.99354 0.92467 0.90020 0.91035 0.85387 0.83519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.34 14.32 67.79 0.97 -1.37 16 2 C -0.16 -2.15 9.50 25.66 0.24 -1.91 16 3 C -0.04 -0.57 5.79 29.10 0.17 -0.40 16 4 C -0.12 -2.18 5.12 -19.85 -0.10 -2.29 16 5 C -0.08 -1.49 9.69 22.25 0.22 -1.28 16 6 C -0.21 -5.04 9.03 22.37 0.20 -4.84 16 7 C 0.10 2.94 6.68 22.51 0.15 3.10 16 8 O -0.30 -10.21 10.19 -92.46 -0.94 -11.15 16 9 C 0.07 2.22 4.06 30.94 0.13 2.34 16 10 C 0.00 -0.05 7.52 83.58 0.63 0.58 16 11 N -0.49 -22.45 6.32 -932.93 -5.89 -28.35 16 12 C 0.17 9.40 4.57 85.56 0.39 9.79 16 13 C -0.53 -31.60 9.39 25.60 0.24 -31.36 16 14 H 0.05 3.17 7.81 -2.91 -0.02 3.14 16 15 C 0.00 0.22 5.46 84.65 0.46 0.69 16 16 N -0.93 -56.52 13.29 21.45 0.28 -56.23 16 17 Si 0.97 45.53 29.54 68.60 2.03 47.56 16 18 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 19 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 20 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 21 C -0.01 -0.35 7.56 83.58 0.63 0.29 16 22 C -0.17 -4.20 9.99 22.37 0.22 -3.97 16 23 C -0.08 -1.51 9.69 22.26 0.22 -1.30 16 24 H 0.10 1.10 8.06 -2.91 -0.02 1.08 16 25 H 0.11 1.03 7.84 -2.91 -0.02 1.01 16 26 H 0.10 1.49 8.06 -2.91 -0.02 1.47 16 27 H 0.09 0.89 7.74 -2.39 -0.02 0.88 16 28 H 0.09 0.94 8.08 -2.39 -0.02 0.92 16 29 H 0.15 2.01 8.06 -2.91 -0.02 1.98 16 30 H 0.14 2.91 5.89 -2.91 -0.02 2.90 16 31 H 0.12 2.94 5.90 -2.39 -0.01 2.92 16 32 H 0.09 3.06 8.14 -2.39 -0.02 3.04 16 33 H 0.09 3.01 7.91 -2.39 -0.02 3.00 16 34 H 0.00 0.22 8.08 -2.39 -0.02 0.20 16 35 H -0.01 -0.63 7.30 -2.39 -0.02 -0.65 16 36 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 37 H 0.08 3.01 7.42 -2.38 -0.02 2.99 16 38 H 0.07 2.84 8.14 -2.39 -0.02 2.82 16 39 H 0.13 3.13 8.06 -2.91 -0.02 3.11 16 40 H 0.15 2.14 8.06 -2.91 -0.02 2.12 16 Total: -1.00 -69.01 337.87 1.25 -67.76 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: 1.01 Total: 12.34 kcal Atomic # 6 Polarization: -36.70 SS G_CDS: 4.77 Total: -31.94 kcal Atomic # 7 Polarization: -78.97 SS G_CDS: -5.61 Total: -84.58 kcal Atomic # 8 Polarization: -10.21 SS G_CDS: -0.94 Total: -11.15 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal Total: -69.01 1.25 -67.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233597406.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.090 kcal (2) G-P(sol) polarization free energy of solvation -69.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.761 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds