Wall clock time and date at job start Mon Mar 30 2020 01:42:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47301 * 2 1 4 4 C 1.52997 * 109.46978 * 179.97438 * 3 2 1 5 5 N 1.46505 * 109.47097 * 186.69106 * 4 3 2 6 6 C 1.36936 * 119.99850 * 279.66957 * 5 4 3 7 7 H 1.07998 * 120.00275 * 336.09783 * 6 5 4 8 8 C 1.38809 * 119.99984 * 156.10198 * 6 5 4 9 9 N 1.31618 * 120.00106 * 31.26045 * 8 6 5 10 10 Si 1.86799 * 120.00166 * 211.26454 * 8 6 5 11 11 H 1.48491 * 109.47499 * 59.99481 * 10 8 6 12 12 H 1.48495 * 109.47247 * 179.97438 * 10 8 6 13 13 H 1.48511 * 109.46971 * 299.99462 * 10 8 6 14 14 C 1.46493 * 119.99879 * 99.66786 * 5 4 3 15 15 C 1.50701 * 109.46959 * 277.70083 * 14 5 4 16 16 C 1.37869 * 120.02028 * 251.33401 * 15 14 5 17 17 C 1.38718 * 120.69183 * 179.69819 * 16 15 14 18 18 C 1.37758 * 120.27297 * 0.30125 * 17 16 15 19 19 C 1.39384 * 119.60501 * 359.97438 * 18 17 16 20 20 C 1.46781 * 134.34622 * 179.97438 * 19 18 17 21 21 C 1.33995 * 106.18365 * 180.02562 * 20 19 18 22 22 O 1.34449 * 110.16075 * 0.02562 * 21 20 19 23 23 C 1.34838 * 110.89468 * 359.97438 * 22 21 20 24 24 H 1.08994 * 109.46696 * 59.99693 * 1 2 3 25 25 H 1.09004 * 109.47008 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46495 * 299.99601 * 1 2 3 27 27 H 1.08999 * 109.47114 * 240.00064 * 2 1 3 28 28 H 1.09000 * 109.47098 * 120.00471 * 2 1 3 29 29 H 1.08995 * 109.47020 * 60.00492 * 3 2 1 30 30 H 1.08995 * 109.46994 * 300.00398 * 3 2 1 31 31 H 1.09004 * 109.47179 * 66.69702 * 4 3 2 32 32 H 1.09001 * 109.47580 * 306.69467 * 4 3 2 33 33 H 0.97000 * 120.00530 * 180.02562 * 9 8 6 34 34 H 1.09000 * 109.47242 * 157.70323 * 14 5 4 35 35 H 1.09002 * 109.47542 * 37.69911 * 14 5 4 36 36 H 1.08006 * 119.64999 * 359.97438 * 16 15 14 37 37 H 1.08000 * 119.85912 * 180.28068 * 17 16 15 38 38 H 1.08008 * 120.19539 * 179.97438 * 18 17 16 39 39 H 1.07998 * 126.91260 * 0.04607 * 20 19 18 40 40 H 1.08000 * 124.91994 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 7 4.0584 2.8143 0.1616 6 6 4.0993 3.6574 -0.9167 7 1 4.1533 3.2530 -1.9166 8 6 4.0714 5.0318 -0.7245 9 7 4.6041 5.5557 0.3591 10 14 3.2779 6.1379 -2.0036 11 1 1.8482 5.7684 -2.1592 12 1 3.3780 7.5530 -1.5649 13 1 3.9764 5.9716 -3.3036 14 6 4.5029 3.2840 1.4760 15 6 3.3066 3.7066 2.2893 16 6 3.0834 5.0429 2.5449 17 6 1.9834 5.4478 3.2867 18 6 1.1000 4.5152 3.7844 19 6 1.3173 3.1607 3.5380 20 6 0.6103 1.9259 3.8986 21 6 1.3171 0.9211 3.3637 22 8 2.3880 1.4044 2.7100 23 6 2.4313 2.7499 2.7866 24 1 -0.3632 0.5139 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3632 0.5138 0.8901 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 1.6768 1.9563 0.8900 30 1 1.6767 1.9563 -0.8899 31 1 3.9338 1.0357 -0.9430 32 1 3.9331 0.8284 0.8249 33 1 4.5843 6.5161 0.4937 34 1 5.1749 4.1329 1.3503 35 1 5.0267 2.4791 1.9916 36 1 3.7699 5.7824 2.1598 37 1 1.8190 6.4985 3.4750 38 1 0.2441 4.8319 4.3621 39 1 -0.2972 1.8438 4.4782 40 1 1.0637 -0.1255 3.4464 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001236736568.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:48 Heat of formation + Delta-G solvation = 54.981020 kcal Electronic energy + Delta-G solvation = -22335.716038 eV Core-core repulsion = 19310.937904 eV Total energy + Delta-G solvation = -3024.778134 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.79746 -37.36276 -36.10436 -34.04033 -32.10783 -31.33339 -30.04809 -28.59697 -27.76781 -25.46590 -23.79372 -22.14640 -21.57717 -21.00870 -20.19241 -19.55871 -17.24312 -16.43556 -16.20377 -15.74028 -15.08323 -14.59069 -14.29690 -13.66016 -13.53837 -13.38222 -13.06139 -12.91500 -12.47541 -12.05591 -12.00994 -11.85221 -11.35633 -11.30581 -11.17860 -10.86367 -10.72308 -10.61082 -10.39307 -10.26910 -10.06136 -9.94458 -9.78887 -9.52468 -9.27401 -8.42431 -7.78125 -7.27220 -6.77266 -5.84157 -3.16632 1.70438 2.20157 3.00788 3.39112 3.46520 3.51490 3.53071 4.45245 4.60643 5.03047 5.19178 5.31338 5.43081 5.49427 5.68264 5.70231 5.75844 5.80408 5.89258 6.08642 6.10924 6.22291 6.29857 6.40588 6.46896 6.49022 6.54103 6.64557 6.71610 6.72194 6.88621 6.93421 7.12582 7.13369 7.25246 7.34025 7.46786 7.64166 7.80108 7.88014 8.00542 8.51419 9.22394 9.85824 10.35027 11.10555 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.015388 B = 0.009409 C = 0.007100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1819.141836 B = 2975.134266 C = 3942.633821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.118 4.118 3 C -0.138 4.138 4 C 0.156 3.844 5 N -0.591 5.591 6 C -0.250 4.250 7 H 0.074 0.926 8 C 0.017 3.983 9 N -0.885 5.885 10 Si 0.880 3.120 11 H -0.287 1.287 12 H -0.290 1.290 13 H -0.285 1.285 14 C 0.164 3.836 15 C -0.047 4.047 16 C -0.075 4.075 17 C -0.147 4.147 18 C -0.103 4.103 19 C -0.151 4.151 20 C -0.221 4.221 21 C -0.006 4.006 22 O -0.184 6.184 23 C 0.062 3.938 24 H 0.049 0.951 25 H 0.043 0.957 26 H 0.050 0.950 27 H 0.050 0.950 28 H 0.054 0.946 29 H 0.066 0.934 30 H 0.050 0.950 31 H 0.032 0.968 32 H 0.042 0.958 33 H 0.255 0.745 34 H 0.148 0.852 35 H 0.012 0.988 36 H 0.165 0.835 37 H 0.114 0.886 38 H 0.109 0.891 39 H 0.144 0.856 40 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.734 -6.451 6.167 10.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.156 4.156 3 C -0.178 4.178 4 C 0.029 3.971 5 N -0.310 5.310 6 C -0.378 4.378 7 H 0.092 0.908 8 C -0.181 4.181 9 N -0.531 5.531 10 Si 0.709 3.291 11 H -0.214 1.214 12 H -0.216 1.216 13 H -0.211 1.211 14 C 0.038 3.962 15 C -0.050 4.050 16 C -0.093 4.093 17 C -0.166 4.166 18 C -0.122 4.122 19 C -0.152 4.152 20 C -0.240 4.240 21 C -0.072 4.072 22 O -0.085 6.085 23 C 0.014 3.986 24 H 0.068 0.932 25 H 0.063 0.937 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.073 0.927 29 H 0.085 0.915 30 H 0.068 0.932 31 H 0.050 0.950 32 H 0.061 0.939 33 H 0.067 0.933 34 H 0.164 0.836 35 H 0.030 0.970 36 H 0.182 0.818 37 H 0.132 0.868 38 H 0.127 0.873 39 H 0.161 0.839 40 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -5.449 -6.440 6.024 10.366 hybrid contribution -1.240 0.599 -0.533 1.477 sum -6.689 -5.841 5.491 10.441 Atomic orbital electron populations 1.21756 0.96984 1.00237 1.01556 1.21472 0.94828 0.98600 1.00725 1.22303 0.99141 0.94308 1.02052 1.20805 0.91698 0.86561 0.98035 1.44030 1.72691 1.09190 1.05099 1.19115 1.44307 0.87341 0.86998 0.90777 1.24830 1.00049 0.96646 0.96526 1.69655 1.43624 1.10936 1.28899 0.86677 0.81134 0.79611 0.81687 1.21390 1.21649 1.21101 1.20695 0.92469 1.00074 0.82943 1.20078 0.98272 0.90116 0.96530 1.21800 0.97256 0.96001 0.94269 1.21105 0.96402 0.98534 1.00535 1.20253 0.99601 0.90710 1.01594 1.19834 0.97427 0.94130 1.03833 1.22318 1.02754 0.91297 1.07618 1.23661 0.87941 0.98945 0.96646 1.84129 1.42139 1.20365 1.61891 1.19686 0.97717 0.81058 1.00090 0.93230 0.93750 0.93133 0.93080 0.92724 0.91521 0.93166 0.94981 0.93939 0.93263 0.83554 0.97041 0.81840 0.86825 0.87301 0.83856 0.79058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 9.91 37.16 0.37 -1.73 16 2 C -0.12 -1.87 5.87 -26.73 -0.16 -2.03 16 3 C -0.14 -2.77 4.56 -26.73 -0.12 -2.89 16 4 C 0.16 3.33 4.96 -4.04 -0.02 3.31 16 5 N -0.59 -14.54 2.55 -174.61 -0.45 -14.98 16 6 C -0.25 -6.63 9.52 -15.06 -0.14 -6.77 16 7 H 0.07 1.98 8.00 -52.49 -0.42 1.56 16 8 C 0.02 0.44 5.34 -17.43 -0.09 0.34 16 9 N -0.88 -22.75 7.00 55.49 0.39 -22.36 16 10 Si 0.88 21.15 29.65 -169.99 -5.04 16.11 16 11 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 12 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 13 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 14 C 0.16 3.91 5.24 -5.20 -0.03 3.88 16 15 C -0.05 -1.06 5.44 -104.52 -0.57 -1.63 16 16 C -0.07 -1.63 8.89 -39.54 -0.35 -1.98 16 17 C -0.15 -2.82 10.03 -39.58 -0.40 -3.22 16 18 C -0.10 -1.90 10.10 -39.33 -0.40 -2.30 16 19 C -0.15 -2.92 6.40 -105.16 -0.67 -3.60 16 20 C -0.22 -3.49 11.14 -37.62 -0.42 -3.91 16 21 C -0.01 -0.09 11.86 29.24 0.35 0.25 16 22 O -0.18 -3.46 6.95 3.83 0.03 -3.43 16 23 C 0.06 1.29 4.92 -38.49 -0.19 1.10 16 24 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 25 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.05 0.82 8.02 -51.93 -0.42 0.40 16 29 H 0.07 1.45 4.25 -51.93 -0.22 1.22 16 30 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.03 0.68 8.12 -51.93 -0.42 0.26 16 32 H 0.04 0.87 7.26 -51.93 -0.38 0.50 16 33 H 0.26 6.35 7.94 -40.82 -0.32 6.03 16 34 H 0.15 3.78 5.03 -51.93 -0.26 3.52 16 35 H 0.01 0.27 7.98 -51.93 -0.41 -0.15 16 36 H 0.16 3.70 5.26 -52.48 -0.28 3.42 16 37 H 0.11 1.86 8.06 -52.49 -0.42 1.44 16 38 H 0.11 1.69 8.06 -52.48 -0.42 1.27 16 39 H 0.14 1.84 8.06 -52.49 -0.42 1.41 16 40 H 0.19 2.04 8.06 -52.49 -0.42 1.61 16 LS Contribution 316.43 15.07 4.77 4.77 Total: -1.00 -27.68 316.43 -8.88 -36.56 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: -5.73 Total: 4.50 kcal Atomic # 6 Polarization: -18.31 SS G_CDS: -2.84 Total: -21.16 kcal Atomic # 7 Polarization: -37.28 SS G_CDS: -0.06 Total: -37.34 kcal Atomic # 8 Polarization: -3.46 SS G_CDS: 0.03 Total: -3.43 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.04 Total: 16.11 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -27.68 -8.88 -36.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236736568.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.537 kcal (2) G-P(sol) polarization free energy of solvation -27.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.556 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds