Wall clock time and date at job start Mon Mar 30 2020 01:42:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47301 * 2 1 4 4 C 1.52997 * 109.46978 * 179.97438 * 3 2 1 5 5 N 1.46505 * 109.47097 * 186.69106 * 4 3 2 6 6 C 1.36936 * 119.99850 * 279.66957 * 5 4 3 7 7 H 1.07998 * 120.00275 * 336.09783 * 6 5 4 8 8 C 1.38809 * 119.99984 * 156.10198 * 6 5 4 9 9 N 1.31618 * 120.00106 * 31.26045 * 8 6 5 10 10 Si 1.86799 * 120.00166 * 211.26454 * 8 6 5 11 11 H 1.48491 * 109.47499 * 59.99481 * 10 8 6 12 12 H 1.48495 * 109.47247 * 179.97438 * 10 8 6 13 13 H 1.48511 * 109.46971 * 299.99462 * 10 8 6 14 14 C 1.46493 * 119.99879 * 99.66786 * 5 4 3 15 15 C 1.50701 * 109.46959 * 277.70083 * 14 5 4 16 16 C 1.37869 * 120.02028 * 251.33401 * 15 14 5 17 17 C 1.38718 * 120.69183 * 179.69819 * 16 15 14 18 18 C 1.37758 * 120.27297 * 0.30125 * 17 16 15 19 19 C 1.39384 * 119.60501 * 359.97438 * 18 17 16 20 20 C 1.46781 * 134.34622 * 179.97438 * 19 18 17 21 21 C 1.33995 * 106.18365 * 180.02562 * 20 19 18 22 22 O 1.34449 * 110.16075 * 0.02562 * 21 20 19 23 23 C 1.34838 * 110.89468 * 359.97438 * 22 21 20 24 24 H 1.08994 * 109.46696 * 59.99693 * 1 2 3 25 25 H 1.09004 * 109.47008 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46495 * 299.99601 * 1 2 3 27 27 H 1.08999 * 109.47114 * 240.00064 * 2 1 3 28 28 H 1.09000 * 109.47098 * 120.00471 * 2 1 3 29 29 H 1.08995 * 109.47020 * 60.00492 * 3 2 1 30 30 H 1.08995 * 109.46994 * 300.00398 * 3 2 1 31 31 H 1.09004 * 109.47179 * 66.69702 * 4 3 2 32 32 H 1.09001 * 109.47580 * 306.69467 * 4 3 2 33 33 H 0.97000 * 120.00530 * 180.02562 * 9 8 6 34 34 H 1.09000 * 109.47242 * 157.70323 * 14 5 4 35 35 H 1.09002 * 109.47542 * 37.69911 * 14 5 4 36 36 H 1.08006 * 119.64999 * 359.97438 * 16 15 14 37 37 H 1.08000 * 119.85912 * 180.28068 * 17 16 15 38 38 H 1.08008 * 120.19539 * 179.97438 * 18 17 16 39 39 H 1.07998 * 126.91260 * 0.04607 * 20 19 18 40 40 H 1.08000 * 124.91994 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 7 4.0584 2.8143 0.1616 6 6 4.0993 3.6574 -0.9167 7 1 4.1533 3.2530 -1.9166 8 6 4.0714 5.0318 -0.7245 9 7 4.6041 5.5557 0.3591 10 14 3.2779 6.1379 -2.0036 11 1 1.8482 5.7684 -2.1592 12 1 3.3780 7.5530 -1.5649 13 1 3.9764 5.9716 -3.3036 14 6 4.5029 3.2840 1.4760 15 6 3.3066 3.7066 2.2893 16 6 3.0834 5.0429 2.5449 17 6 1.9834 5.4478 3.2867 18 6 1.1000 4.5152 3.7844 19 6 1.3173 3.1607 3.5380 20 6 0.6103 1.9259 3.8986 21 6 1.3171 0.9211 3.3637 22 8 2.3880 1.4044 2.7100 23 6 2.4313 2.7499 2.7866 24 1 -0.3632 0.5139 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3632 0.5138 0.8901 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 1.6768 1.9563 0.8900 30 1 1.6767 1.9563 -0.8899 31 1 3.9338 1.0357 -0.9430 32 1 3.9331 0.8284 0.8249 33 1 4.5843 6.5161 0.4937 34 1 5.1749 4.1329 1.3503 35 1 5.0267 2.4791 1.9916 36 1 3.7699 5.7824 2.1598 37 1 1.8190 6.4985 3.4750 38 1 0.2441 4.8319 4.3621 39 1 -0.2972 1.8438 4.4782 40 1 1.0637 -0.1255 3.4464 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001236736568.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:47 Heat of formation + Delta-G solvation = 42.740660 kcal Electronic energy + Delta-G solvation = -22336.246820 eV Core-core repulsion = 19310.937904 eV Total energy + Delta-G solvation = -3025.308916 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.17875 -38.95558 -37.74306 -35.56440 -33.63221 -33.09785 -31.55289 -30.02024 -29.32633 -27.29637 -25.42911 -23.57594 -23.07476 -22.48004 -21.71511 -21.10928 -19.04321 -17.86988 -17.67199 -17.21223 -16.93688 -16.14121 -15.68823 -15.45453 -15.15904 -14.97598 -14.55867 -14.28819 -13.88202 -13.61694 -13.43773 -13.33221 -12.99319 -12.90075 -12.79438 -12.50881 -12.46804 -12.20439 -12.03165 -11.94261 -11.66103 -11.60140 -11.42703 -11.20902 -10.76433 -10.34062 -9.26994 -8.76597 -8.65813 -7.81914 -5.17298 0.28962 0.68498 1.43425 1.49857 1.55295 1.69670 2.20338 2.50983 3.00764 3.19983 3.77684 3.82389 4.00242 4.19846 4.29360 4.33434 4.45157 4.48898 4.55981 4.58468 4.69132 4.84767 4.87169 4.96346 4.99060 5.07964 5.09632 5.15261 5.20661 5.26559 5.42424 5.47384 5.56389 5.66176 5.70990 5.72682 5.77323 5.81633 6.01098 6.17993 6.51788 6.57522 7.23716 7.92687 8.39243 9.09564 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.015388 B = 0.009409 C = 0.007100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1819.141836 B = 2975.134266 C = 3942.633821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.111 4.111 3 C -0.126 4.126 4 C 0.157 3.843 5 N -0.604 5.604 6 C -0.272 4.272 7 H 0.064 0.936 8 C -0.014 4.014 9 N -0.887 5.887 10 Si 0.928 3.072 11 H -0.298 1.298 12 H -0.287 1.287 13 H -0.281 1.281 14 C 0.170 3.830 15 C -0.072 4.072 16 C -0.097 4.097 17 C -0.154 4.154 18 C -0.100 4.100 19 C -0.166 4.166 20 C -0.223 4.223 21 C 0.002 3.998 22 O -0.198 6.198 23 C 0.042 3.958 24 H 0.039 0.961 25 H 0.073 0.927 26 H 0.047 0.953 27 H 0.058 0.942 28 H 0.069 0.931 29 H 0.053 0.947 30 H 0.020 0.980 31 H 0.029 0.971 32 H 0.049 0.951 33 H 0.256 0.744 34 H 0.123 0.877 35 H 0.008 0.992 36 H 0.147 0.853 37 H 0.138 0.862 38 H 0.143 0.857 39 H 0.179 0.821 40 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.059 -7.905 7.329 13.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.149 4.149 3 C -0.166 4.166 4 C 0.031 3.969 5 N -0.324 5.324 6 C -0.401 4.401 7 H 0.082 0.918 8 C -0.211 4.211 9 N -0.532 5.532 10 Si 0.757 3.243 11 H -0.226 1.226 12 H -0.213 1.213 13 H -0.207 1.207 14 C 0.045 3.955 15 C -0.075 4.075 16 C -0.116 4.116 17 C -0.172 4.172 18 C -0.118 4.118 19 C -0.166 4.166 20 C -0.242 4.242 21 C -0.063 4.063 22 O -0.099 6.099 23 C -0.005 4.005 24 H 0.058 0.942 25 H 0.092 0.908 26 H 0.066 0.934 27 H 0.077 0.923 28 H 0.087 0.913 29 H 0.071 0.929 30 H 0.039 0.961 31 H 0.047 0.953 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.140 0.860 35 H 0.026 0.974 36 H 0.164 0.836 37 H 0.156 0.844 38 H 0.161 0.839 39 H 0.196 0.804 40 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -7.769 -7.900 7.194 13.211 hybrid contribution -0.505 0.993 -0.842 1.397 sum -8.274 -6.907 6.352 12.510 Atomic orbital electron populations 1.21710 0.95346 1.01982 1.01002 1.21413 0.96188 0.95500 1.01801 1.22123 0.97712 0.96875 0.99855 1.20869 0.92854 0.85160 0.97993 1.44166 1.73317 1.10092 1.04851 1.19190 1.45535 0.88110 0.87258 0.91793 1.25290 1.00285 0.97444 0.98130 1.69802 1.43168 1.10929 1.29326 0.85928 0.79473 0.78469 0.80407 1.22625 1.21291 1.20706 1.20443 0.93130 0.98848 0.83115 1.19903 0.98610 0.91179 0.97827 1.21719 0.98411 0.95572 0.95870 1.21339 0.95653 1.00182 1.00043 1.20656 1.00005 0.90344 1.00817 1.20361 0.97297 0.95718 1.03273 1.22688 1.03856 0.89500 1.08139 1.24628 0.86097 1.00954 0.94585 1.84112 1.43765 1.19399 1.62666 1.19633 0.98173 0.81921 1.00795 0.94163 0.90789 0.93379 0.92344 0.91269 0.92891 0.96077 0.95313 0.93237 0.93286 0.85981 0.97438 0.83569 0.84400 0.83899 0.80410 0.74363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.62 9.91 71.98 0.71 -2.91 16 2 C -0.11 -3.26 5.87 30.60 0.18 -3.08 16 3 C -0.13 -5.02 4.56 30.59 0.14 -4.88 16 4 C 0.16 6.82 4.96 86.38 0.43 7.25 16 5 N -0.60 -30.75 2.55 -706.35 -1.80 -32.55 16 6 C -0.27 -14.99 9.52 84.03 0.80 -14.19 16 7 H 0.06 3.55 8.00 -2.91 -0.02 3.53 16 8 C -0.01 -0.78 5.34 84.86 0.45 -0.33 16 9 N -0.89 -47.20 7.00 21.65 0.15 -47.05 16 10 Si 0.93 44.41 29.65 68.60 2.03 46.45 16 11 H -0.30 -14.79 7.11 99.48 0.71 -14.08 16 12 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 13 H -0.28 -13.18 7.11 99.48 0.71 -12.48 16 14 C 0.17 8.48 5.24 85.63 0.45 8.93 16 15 C -0.07 -3.35 5.44 -19.80 -0.11 -3.46 16 16 C -0.10 -4.34 8.89 22.30 0.20 -4.14 16 17 C -0.15 -5.79 10.03 22.27 0.22 -5.57 16 18 C -0.10 -3.47 10.10 22.43 0.23 -3.24 16 19 C -0.17 -6.05 6.40 -20.21 -0.13 -6.18 16 20 C -0.22 -6.19 11.14 23.54 0.26 -5.93 16 21 C 0.00 0.05 11.86 66.85 0.79 0.84 16 22 O -0.20 -7.11 6.95 -9.22 -0.06 -7.17 16 23 C 0.04 1.74 4.92 22.98 0.11 1.85 16 24 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 25 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 26 H 0.05 1.23 8.14 -2.39 -0.02 1.22 16 27 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 28 H 0.07 1.84 8.02 -2.39 -0.02 1.83 16 29 H 0.05 2.27 4.25 -2.39 -0.01 2.26 16 30 H 0.02 0.92 8.14 -2.39 -0.02 0.91 16 31 H 0.03 1.24 8.12 -2.38 -0.02 1.22 16 32 H 0.05 2.04 7.26 -2.39 -0.02 2.03 16 33 H 0.26 13.11 7.94 -92.71 -0.74 12.37 16 34 H 0.12 6.66 5.03 -2.39 -0.01 6.65 16 35 H 0.01 0.37 7.98 -2.39 -0.02 0.35 16 36 H 0.15 6.92 5.26 -2.91 -0.02 6.91 16 37 H 0.14 4.34 8.06 -2.91 -0.02 4.32 16 38 H 0.14 3.89 8.06 -2.91 -0.02 3.87 16 39 H 0.18 3.61 8.06 -2.91 -0.02 3.58 16 40 H 0.24 3.72 8.06 -2.91 -0.02 3.70 16 Total: -1.00 -61.96 316.43 6.12 -55.84 By element: Atomic # 1 Polarization: 18.46 SS G_CDS: 1.06 Total: 19.52 kcal Atomic # 6 Polarization: -39.77 SS G_CDS: 4.74 Total: -35.03 kcal Atomic # 7 Polarization: -77.95 SS G_CDS: -1.65 Total: -79.60 kcal Atomic # 8 Polarization: -7.11 SS G_CDS: -0.06 Total: -7.17 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.45 kcal Total: -61.96 6.12 -55.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236736568.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.579 kcal (2) G-P(sol) polarization free energy of solvation -61.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.838 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds