Wall clock time and date at job start Mon Mar 30 2020 02:45:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47119 * 2 1 4 4 N 1.46892 * 109.47087 * 184.24683 * 3 2 1 5 5 C 1.46903 * 111.00192 * 304.67739 * 4 3 2 6 6 C 1.50697 * 109.47148 * 293.95575 * 5 4 3 7 7 H 1.08005 * 119.99810 * 359.97438 * 6 5 4 8 8 C 1.37878 * 120.00250 * 179.97438 * 6 5 4 9 9 N 1.31516 * 120.00002 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00219 * 179.97438 * 8 6 5 11 11 H 1.48505 * 109.46775 * 60.00214 * 10 8 6 12 12 H 1.48498 * 109.47082 * 179.97438 * 10 8 6 13 13 H 1.48498 * 109.47051 * 300.00148 * 10 8 6 14 14 C 1.46906 * 111.00187 * 68.62946 * 4 3 2 15 15 C 1.50693 * 109.46696 * 76.05484 * 14 4 3 16 16 C 1.37864 * 120.02215 * 254.56834 * 15 14 4 17 17 C 1.38720 * 120.69099 * 179.97438 * 16 15 14 18 18 C 1.37765 * 120.27660 * 0.02562 * 17 16 15 19 19 C 1.39384 * 119.59848 * 0.02562 * 18 17 16 20 20 C 1.46786 * 134.34314 * 179.97438 * 19 18 17 21 21 C 1.33982 * 106.18427 * 180.02562 * 20 19 18 22 22 O 1.34446 * 110.16164 * 359.97438 * 21 20 19 23 23 C 1.34841 * 110.89710 * 359.74007 * 22 21 20 24 24 H 1.08999 * 109.47572 * 300.00379 * 1 2 3 25 25 H 1.09009 * 109.46666 * 60.00347 * 1 2 3 26 26 H 1.09002 * 109.47266 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47090 * 239.99605 * 2 1 3 28 28 H 1.08999 * 109.46812 * 119.99506 * 2 1 3 29 29 H 1.09003 * 109.47109 * 64.24571 * 3 2 1 30 30 H 1.08995 * 109.47104 * 304.24994 * 3 2 1 31 31 H 1.09003 * 109.47199 * 53.95516 * 5 4 3 32 32 H 1.09002 * 109.47439 * 173.95298 * 5 4 3 33 33 H 0.97001 * 120.00197 * 179.97438 * 9 8 6 34 34 H 1.09000 * 109.47032 * 196.05583 * 14 4 3 35 35 H 1.08995 * 109.46751 * 316.05659 * 14 4 3 36 36 H 1.07995 * 119.65118 * 359.97438 * 16 15 14 37 37 H 1.07999 * 119.85946 * 180.02562 * 17 16 15 38 38 H 1.07996 * 120.19709 * 179.97438 * 18 17 16 39 39 H 1.07999 * 126.90647 * 0.02902 * 20 19 18 40 40 H 1.08001 * 124.91975 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5054 1.4438 -0.1026 5 6 4.1086 0.6364 0.9662 6 6 3.8420 1.2872 2.2989 7 1 3.2808 2.2088 2.3472 8 6 4.3143 0.7063 3.4567 9 7 4.9972 -0.4162 3.3980 10 14 3.9843 1.5134 5.1087 11 1 2.5188 1.6106 5.3281 12 1 4.5930 0.6965 6.1891 13 1 4.5783 2.8744 5.1220 14 6 3.9410 0.9762 -1.4253 15 6 3.7290 2.0703 -2.4397 16 6 2.6884 1.9842 -3.3398 17 6 2.4802 2.9836 -4.2791 18 6 3.3146 4.0789 -4.3245 19 6 4.3711 4.1774 -3.4206 20 6 5.4283 5.1674 -3.1821 21 6 6.1556 4.6981 -2.1594 22 8 5.6591 3.5213 -1.7393 23 6 4.5789 3.1684 -2.4651 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.7401 1.9340 0.9256 30 1 1.6159 1.9779 -0.8494 31 1 3.6734 -0.3630 0.9563 32 1 5.1844 0.5657 0.8051 33 1 5.3298 -0.8247 4.2125 34 1 4.9986 0.7150 -1.3882 35 1 3.3599 0.0991 -1.7101 36 1 2.0284 1.1298 -3.3134 37 1 1.6605 2.9027 -4.9776 38 1 3.1516 4.8560 -5.0565 39 1 5.5877 6.0889 -3.7223 40 1 7.0155 5.1936 -1.7336 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001236737294.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:35 Heat of formation + Delta-G solvation = 27.763833 kcal Electronic energy + Delta-G solvation = -21089.246885 eV Core-core repulsion = 18063.288525 eV Total energy + Delta-G solvation = -3025.958360 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.12519 -38.26948 -36.87063 -33.08983 -32.73799 -31.76036 -30.37347 -29.14140 -27.09096 -26.05743 -23.91670 -22.44040 -22.11640 -22.01645 -20.54414 -19.09165 -17.14532 -16.78248 -16.14024 -15.78278 -15.36794 -15.05728 -14.69372 -14.36427 -13.77035 -13.62705 -13.42933 -13.07125 -12.73501 -12.45070 -12.18939 -11.96085 -11.86094 -11.46057 -11.23856 -11.09269 -10.94407 -10.86284 -10.73928 -10.58052 -10.41413 -9.87501 -9.82749 -9.67538 -9.16464 -8.38707 -8.32038 -7.91858 -7.09988 -5.98174 -3.98471 1.12776 1.61784 2.58285 3.15020 3.35863 3.39618 3.43057 3.90557 4.46900 4.64351 4.82640 4.99922 5.18894 5.31110 5.37285 5.39418 5.53133 5.55947 5.58542 5.61452 5.77318 5.84746 5.89934 6.02973 6.12376 6.19620 6.35260 6.43554 6.44983 6.52534 6.57753 6.60479 6.68925 6.82941 6.88231 7.00606 7.36870 7.44430 7.47938 7.85116 8.14742 8.26660 8.60284 9.08567 9.65011 11.12578 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.017176 B = 0.005800 C = 0.004720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1629.832849 B = 4826.319189 C = 5930.303615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.163 4.163 3 C 0.068 3.932 4 N -0.528 5.528 5 C 0.190 3.810 6 C -0.501 4.501 7 H 0.061 0.939 8 C 0.056 3.944 9 N -0.900 5.900 10 Si 0.895 3.105 11 H -0.278 1.278 12 H -0.288 1.288 13 H -0.277 1.277 14 C 0.085 3.915 15 C -0.045 4.045 16 C -0.100 4.100 17 C -0.136 4.136 18 C -0.086 4.086 19 C -0.137 4.137 20 C -0.226 4.226 21 C 0.013 3.987 22 O -0.176 6.176 23 C 0.081 3.919 24 H 0.053 0.947 25 H 0.045 0.955 26 H 0.045 0.955 27 H 0.050 0.950 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.051 0.949 31 H 0.001 0.999 32 H 0.027 0.973 33 H 0.261 0.739 34 H 0.076 0.924 35 H 0.042 0.958 36 H 0.128 0.872 37 H 0.124 0.876 38 H 0.120 0.880 39 H 0.152 0.848 40 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.287 6.581 -14.690 16.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.202 4.202 3 C -0.060 4.060 4 N -0.250 5.250 5 C 0.066 3.934 6 C -0.540 4.540 7 H 0.079 0.921 8 C -0.145 4.145 9 N -0.540 5.540 10 Si 0.723 3.277 11 H -0.203 1.203 12 H -0.214 1.214 13 H -0.203 1.203 14 C -0.043 4.043 15 C -0.046 4.046 16 C -0.119 4.119 17 C -0.154 4.154 18 C -0.104 4.104 19 C -0.138 4.138 20 C -0.245 4.245 21 C -0.053 4.053 22 O -0.076 6.076 23 C 0.032 3.968 24 H 0.072 0.928 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.068 0.932 28 H 0.098 0.902 29 H 0.095 0.905 30 H 0.069 0.931 31 H 0.018 0.982 32 H 0.045 0.955 33 H 0.070 0.930 34 H 0.094 0.906 35 H 0.060 0.940 36 H 0.146 0.854 37 H 0.142 0.858 38 H 0.138 0.862 39 H 0.170 0.830 40 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -2.901 6.758 -14.269 16.052 hybrid contribution -0.354 -0.217 0.784 0.887 sum -3.254 6.541 -13.484 15.336 Atomic orbital electron populations 1.21661 0.96609 1.00635 1.01120 1.22167 0.95300 1.00343 1.02345 1.22022 0.88291 0.94386 1.01309 1.62318 1.06847 1.54990 1.00881 1.19813 0.94429 0.91142 0.88040 1.21090 1.34108 1.08492 0.90278 0.92120 1.24952 0.95401 0.95032 0.99133 1.69947 1.37238 1.18491 1.28301 0.86605 0.78410 0.79353 0.83302 1.20343 1.21415 1.20252 1.21033 1.01055 0.92527 0.89650 1.18953 0.93699 0.94249 0.97693 1.20803 0.96515 0.99467 0.95066 1.20897 1.00140 0.94534 0.99867 1.20373 0.93852 0.98165 0.98016 1.19959 0.98710 0.96059 0.99104 1.22395 0.98099 1.01700 1.02323 1.23984 0.99525 0.85592 0.96191 1.84164 1.37380 1.34360 1.51695 1.19334 0.89311 0.96227 0.91882 0.92826 0.93594 0.93616 0.93162 0.90202 0.90485 0.93068 0.98167 0.95500 0.92976 0.90574 0.93966 0.85365 0.85831 0.86156 0.83018 0.78032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.12 9.91 37.16 0.37 -1.75 16 2 C -0.16 -2.94 5.17 -26.73 -0.14 -3.08 16 3 C 0.07 1.35 5.00 -3.83 -0.02 1.33 16 4 N -0.53 -11.58 4.62 -237.52 -1.10 -12.68 16 5 C 0.19 4.95 4.36 -4.98 -0.02 4.93 16 6 C -0.50 -14.13 8.58 -34.44 -0.30 -14.43 16 7 H 0.06 1.72 7.10 -52.48 -0.37 1.35 16 8 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 9 N -0.90 -26.79 13.29 55.43 0.74 -26.06 16 10 Si 0.90 21.91 29.54 -169.99 -5.02 16.89 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 13 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 14 C 0.09 1.61 5.05 -4.98 -0.03 1.59 16 15 C -0.04 -0.76 4.83 -104.52 -0.50 -1.27 16 16 C -0.10 -1.41 9.03 -39.54 -0.36 -1.77 16 17 C -0.14 -1.70 10.03 -39.58 -0.40 -2.10 16 18 C -0.09 -1.12 10.10 -39.33 -0.40 -1.52 16 19 C -0.14 -2.10 6.40 -105.16 -0.67 -2.77 16 20 C -0.23 -2.94 11.14 -37.62 -0.42 -3.36 16 21 C 0.01 0.18 11.96 29.24 0.35 0.53 16 22 O -0.18 -3.19 10.58 3.83 0.04 -3.15 16 23 C 0.08 1.42 7.11 -38.49 -0.27 1.15 16 24 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.04 0.60 8.14 -51.92 -0.42 0.18 16 26 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.05 0.86 6.25 -51.93 -0.32 0.53 16 28 H 0.08 1.71 6.46 -51.93 -0.34 1.37 16 29 H 0.08 1.66 7.00 -51.93 -0.36 1.30 16 30 H 0.05 0.92 6.97 -51.93 -0.36 0.56 16 31 H 0.00 0.02 5.98 -51.93 -0.31 -0.29 16 32 H 0.03 0.76 7.83 -51.93 -0.41 0.36 16 33 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 34 H 0.08 1.50 7.73 -51.93 -0.40 1.10 16 35 H 0.04 0.74 5.82 -51.93 -0.30 0.43 16 36 H 0.13 1.58 7.98 -52.49 -0.42 1.16 16 37 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 38 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 39 H 0.15 1.48 8.06 -52.49 -0.42 1.06 16 40 H 0.20 1.84 8.06 -52.49 -0.42 1.42 16 LS Contribution 327.55 15.07 4.94 4.94 Total: -1.00 -31.55 327.55 -9.00 -40.55 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: -5.69 Total: 0.54 kcal Atomic # 6 Polarization: -18.13 SS G_CDS: -2.90 Total: -21.03 kcal Atomic # 7 Polarization: -38.38 SS G_CDS: -0.36 Total: -38.74 kcal Atomic # 8 Polarization: -3.19 SS G_CDS: 0.04 Total: -3.15 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -31.55 -9.00 -40.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236737294.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.315 kcal (2) G-P(sol) polarization free energy of solvation -31.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.551 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds