Wall clock time and date at job start Mon Mar 30 2020 02:45:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47119 * 2 1 4 4 N 1.46892 * 109.47087 * 184.24683 * 3 2 1 5 5 C 1.46903 * 111.00192 * 304.67739 * 4 3 2 6 6 C 1.50697 * 109.47148 * 293.95575 * 5 4 3 7 7 H 1.08005 * 119.99810 * 359.97438 * 6 5 4 8 8 C 1.37878 * 120.00250 * 179.97438 * 6 5 4 9 9 N 1.31516 * 120.00002 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00219 * 179.97438 * 8 6 5 11 11 H 1.48505 * 109.46775 * 60.00214 * 10 8 6 12 12 H 1.48498 * 109.47082 * 179.97438 * 10 8 6 13 13 H 1.48498 * 109.47051 * 300.00148 * 10 8 6 14 14 C 1.46906 * 111.00187 * 68.62946 * 4 3 2 15 15 C 1.50693 * 109.46696 * 76.05484 * 14 4 3 16 16 C 1.37864 * 120.02215 * 254.56834 * 15 14 4 17 17 C 1.38720 * 120.69099 * 179.97438 * 16 15 14 18 18 C 1.37765 * 120.27660 * 0.02562 * 17 16 15 19 19 C 1.39384 * 119.59848 * 0.02562 * 18 17 16 20 20 C 1.46786 * 134.34314 * 179.97438 * 19 18 17 21 21 C 1.33982 * 106.18427 * 180.02562 * 20 19 18 22 22 O 1.34446 * 110.16164 * 359.97438 * 21 20 19 23 23 C 1.34841 * 110.89710 * 359.74007 * 22 21 20 24 24 H 1.08999 * 109.47572 * 300.00379 * 1 2 3 25 25 H 1.09009 * 109.46666 * 60.00347 * 1 2 3 26 26 H 1.09002 * 109.47266 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47090 * 239.99605 * 2 1 3 28 28 H 1.08999 * 109.46812 * 119.99506 * 2 1 3 29 29 H 1.09003 * 109.47109 * 64.24571 * 3 2 1 30 30 H 1.08995 * 109.47104 * 304.24994 * 3 2 1 31 31 H 1.09003 * 109.47199 * 53.95516 * 5 4 3 32 32 H 1.09002 * 109.47439 * 173.95298 * 5 4 3 33 33 H 0.97001 * 120.00197 * 179.97438 * 9 8 6 34 34 H 1.09000 * 109.47032 * 196.05583 * 14 4 3 35 35 H 1.08995 * 109.46751 * 316.05659 * 14 4 3 36 36 H 1.07995 * 119.65118 * 359.97438 * 16 15 14 37 37 H 1.07999 * 119.85946 * 180.02562 * 17 16 15 38 38 H 1.07996 * 120.19709 * 179.97438 * 18 17 16 39 39 H 1.07999 * 126.90647 * 0.02902 * 20 19 18 40 40 H 1.08001 * 124.91975 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5054 1.4438 -0.1026 5 6 4.1086 0.6364 0.9662 6 6 3.8420 1.2872 2.2989 7 1 3.2808 2.2088 2.3472 8 6 4.3143 0.7063 3.4567 9 7 4.9972 -0.4162 3.3980 10 14 3.9843 1.5134 5.1087 11 1 2.5188 1.6106 5.3281 12 1 4.5930 0.6965 6.1891 13 1 4.5783 2.8744 5.1220 14 6 3.9410 0.9762 -1.4253 15 6 3.7290 2.0703 -2.4397 16 6 2.6884 1.9842 -3.3398 17 6 2.4802 2.9836 -4.2791 18 6 3.3146 4.0789 -4.3245 19 6 4.3711 4.1774 -3.4206 20 6 5.4283 5.1674 -3.1821 21 6 6.1556 4.6981 -2.1594 22 8 5.6591 3.5213 -1.7393 23 6 4.5789 3.1684 -2.4651 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.7401 1.9340 0.9256 30 1 1.6159 1.9779 -0.8494 31 1 3.6734 -0.3630 0.9563 32 1 5.1844 0.5657 0.8051 33 1 5.3298 -0.8247 4.2125 34 1 4.9986 0.7150 -1.3882 35 1 3.3599 0.0991 -1.7101 36 1 2.0284 1.1298 -3.3134 37 1 1.6605 2.9027 -4.9776 38 1 3.1516 4.8560 -5.0565 39 1 5.5877 6.0889 -3.7223 40 1 7.0155 5.1936 -1.7336 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001236737294.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:34 Heat of formation + Delta-G solvation = 8.787305 kcal Electronic energy + Delta-G solvation = -21090.069769 eV Core-core repulsion = 18063.288525 eV Total energy + Delta-G solvation = -3026.781244 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.24968 -39.68459 -38.24595 -34.88321 -34.27563 -33.15654 -31.68712 -30.22797 -29.00888 -27.49319 -25.65178 -23.84350 -23.55272 -23.12235 -21.84059 -20.63939 -18.42648 -18.24713 -17.79020 -17.09941 -16.78821 -16.44623 -16.29650 -16.05351 -15.26307 -15.01257 -14.79266 -14.31588 -14.19617 -13.81128 -13.46369 -13.27423 -13.23517 -12.89283 -12.83995 -12.65238 -12.59740 -12.43753 -12.36945 -12.23169 -11.96755 -11.64602 -11.37151 -11.21421 -10.93127 -10.59555 -9.43792 -9.03089 -8.84655 -8.19003 -6.28367 0.04107 0.51633 1.38059 1.41409 1.49159 1.53590 2.11041 2.39531 2.79251 3.12857 3.46434 3.63899 3.73534 4.04731 4.11442 4.15853 4.20377 4.34918 4.45593 4.49650 4.51824 4.59676 4.68306 4.73934 4.80944 4.88355 5.00062 5.06015 5.11665 5.18876 5.31576 5.38445 5.43579 5.49645 5.51661 5.57247 5.61064 5.67469 5.87677 6.07443 6.36796 6.39790 6.65965 6.86815 7.40360 8.91434 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.017176 B = 0.005800 C = 0.004720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1629.832849 B = 4826.319189 C = 5930.303615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.154 4.154 3 C 0.074 3.926 4 N -0.540 5.540 5 C 0.210 3.790 6 C -0.516 4.516 7 H 0.055 0.945 8 C 0.004 3.996 9 N -0.934 5.934 10 Si 0.964 3.036 11 H -0.267 1.267 12 H -0.281 1.281 13 H -0.272 1.272 14 C 0.094 3.906 15 C -0.076 4.076 16 C -0.094 4.094 17 C -0.130 4.130 18 C -0.080 4.080 19 C -0.154 4.154 20 C -0.218 4.218 21 C -0.006 4.006 22 O -0.219 6.219 23 C 0.042 3.958 24 H 0.048 0.952 25 H 0.071 0.929 26 H 0.059 0.941 27 H 0.060 0.940 28 H 0.037 0.963 29 H 0.053 0.947 30 H 0.075 0.925 31 H -0.017 1.017 32 H -0.011 1.011 33 H 0.264 0.736 34 H 0.049 0.951 35 H 0.055 0.945 36 H 0.148 0.852 37 H 0.164 0.836 38 H 0.155 0.845 39 H 0.188 0.812 40 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.272 8.353 -16.446 19.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.193 4.193 3 C -0.054 4.054 4 N -0.263 5.263 5 C 0.084 3.916 6 C -0.555 4.555 7 H 0.073 0.927 8 C -0.194 4.194 9 N -0.574 5.574 10 Si 0.789 3.211 11 H -0.192 1.192 12 H -0.206 1.206 13 H -0.197 1.197 14 C -0.034 4.034 15 C -0.077 4.077 16 C -0.113 4.113 17 C -0.148 4.148 18 C -0.098 4.098 19 C -0.155 4.155 20 C -0.237 4.237 21 C -0.070 4.070 22 O -0.120 6.120 23 C -0.006 4.006 24 H 0.067 0.933 25 H 0.090 0.910 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.056 0.944 29 H 0.071 0.929 30 H 0.094 0.906 31 H 0.000 1.000 32 H 0.007 0.993 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.073 0.927 36 H 0.165 0.835 37 H 0.181 0.819 38 H 0.173 0.827 39 H 0.205 0.795 40 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -4.899 8.541 -16.048 18.828 hybrid contribution 0.278 -0.736 1.204 1.438 sum -4.621 7.806 -14.844 17.396 Atomic orbital electron populations 1.21610 0.93551 1.01960 1.02163 1.22032 0.97913 0.98621 1.00746 1.21979 0.86843 0.95536 1.01018 1.62183 1.08332 1.54383 1.01367 1.19394 0.92252 0.90810 0.89183 1.21347 1.34158 1.08397 0.91583 0.92662 1.25840 0.94943 0.95521 1.03085 1.70077 1.38064 1.19859 1.29447 0.85513 0.78775 0.78374 0.78428 1.19187 1.20623 1.19698 1.20917 0.99557 0.94186 0.88745 1.18917 0.95895 0.94091 0.98768 1.21101 0.95371 1.00521 0.94289 1.21340 1.00689 0.93310 0.99457 1.20870 0.92485 0.99002 0.97486 1.20410 1.00007 0.95965 0.99129 1.22828 0.96764 1.02217 1.01841 1.24777 1.00721 0.84606 0.96902 1.84114 1.38288 1.36458 1.53159 1.19763 0.89926 0.97579 0.93289 0.93291 0.91003 0.92191 0.92159 0.94384 0.92892 0.90628 0.99974 0.99255 0.92762 0.93205 0.92685 0.83451 0.81875 0.82743 0.79506 0.74798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.77 9.91 71.98 0.71 -3.06 16 2 C -0.15 -5.62 5.17 30.60 0.16 -5.46 16 3 C 0.07 2.97 5.00 86.31 0.43 3.40 16 4 N -0.54 -24.91 4.62 -905.37 -4.18 -29.09 16 5 C 0.21 11.66 4.36 85.56 0.37 12.04 16 6 C -0.52 -30.46 8.58 25.60 0.22 -30.24 16 7 H 0.06 3.25 7.10 -2.91 -0.02 3.23 16 8 C 0.00 0.23 5.46 84.65 0.46 0.69 16 9 N -0.93 -57.62 13.29 21.45 0.28 -57.33 16 10 Si 0.96 45.73 29.54 68.60 2.03 47.75 16 11 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 12 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 13 H -0.27 -12.59 7.11 99.48 0.71 -11.89 16 14 C 0.09 3.71 5.05 85.55 0.43 4.14 16 15 C -0.08 -2.60 4.83 -19.80 -0.10 -2.69 16 16 C -0.09 -2.46 9.03 22.30 0.20 -2.26 16 17 C -0.13 -2.74 10.03 22.27 0.22 -2.51 16 18 C -0.08 -1.82 10.10 22.43 0.23 -1.59 16 19 C -0.15 -4.47 6.40 -20.21 -0.13 -4.60 16 20 C -0.22 -5.27 11.14 23.54 0.26 -5.01 16 21 C -0.01 -0.16 11.96 66.85 0.80 0.64 16 22 O -0.22 -8.32 10.58 -9.22 -0.10 -8.41 16 23 C 0.04 1.51 7.11 22.98 0.16 1.67 16 24 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 25 H 0.07 1.65 8.14 -2.38 -0.02 1.63 16 26 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 27 H 0.06 2.04 6.25 -2.39 -0.01 2.03 16 28 H 0.04 1.70 6.46 -2.39 -0.02 1.68 16 29 H 0.05 2.35 7.00 -2.39 -0.02 2.33 16 30 H 0.08 2.64 6.97 -2.39 -0.02 2.62 16 31 H -0.02 -1.01 5.98 -2.39 -0.01 -1.02 16 32 H -0.01 -0.66 7.83 -2.39 -0.02 -0.68 16 33 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 34 H 0.05 2.17 7.73 -2.39 -0.02 2.15 16 35 H 0.06 1.97 5.82 -2.39 -0.01 1.96 16 36 H 0.15 3.17 7.98 -2.91 -0.02 3.14 16 37 H 0.16 2.15 8.06 -2.91 -0.02 2.12 16 38 H 0.15 2.39 8.06 -2.91 -0.02 2.37 16 39 H 0.19 2.99 8.06 -2.91 -0.02 2.97 16 40 H 0.24 4.12 8.06 -2.91 -0.02 4.10 16 Total: -1.00 -72.88 327.55 3.50 -69.38 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: 1.03 Total: 12.55 kcal Atomic # 6 Polarization: -39.28 SS G_CDS: 4.44 Total: -34.84 kcal Atomic # 7 Polarization: -82.53 SS G_CDS: -3.90 Total: -86.43 kcal Atomic # 8 Polarization: -8.32 SS G_CDS: -0.10 Total: -8.41 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.75 kcal Total: -72.88 3.50 -69.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236737294.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.167 kcal (2) G-P(sol) polarization free energy of solvation -72.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.380 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds