Wall clock time and date at job start Mon Mar 30 2020 02:38:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.47356 * 2 1 4 4 H 1.08988 * 109.47429 * 181.77830 * 3 2 1 5 5 C 1.50702 * 109.47055 * 61.77834 * 3 2 1 6 6 H 1.07998 * 119.99919 * 244.98017 * 5 3 2 7 7 C 1.37882 * 119.99674 * 64.97803 * 5 3 2 8 8 N 1.31511 * 120.00018 * 9.71169 * 7 5 3 9 9 Si 1.86804 * 119.99766 * 189.70989 * 7 5 3 10 10 H 1.48494 * 109.47291 * 270.00321 * 9 7 5 11 11 H 1.48502 * 109.47147 * 30.00385 * 9 7 5 12 12 H 1.48500 * 109.46898 * 149.99865 * 9 7 5 13 13 N 1.46906 * 109.47337 * 301.78283 * 3 2 1 14 14 C 1.46901 * 110.99613 * 274.08049 * 13 3 2 15 15 C 1.53001 * 109.46884 * 184.34783 * 14 13 3 16 16 C 1.50699 * 109.47075 * 180.02562 * 15 14 13 17 17 C 1.33997 * 126.90724 * 265.03199 * 16 15 14 18 18 O 1.34452 * 110.15627 * 179.97438 * 17 16 15 19 19 C 1.34809 * 110.88864 * 359.97438 * 18 17 16 20 20 C 1.38933 * 133.49394 * 180.02562 * 19 18 17 21 21 C 1.37856 * 119.81712 * 180.02562 * 20 19 18 22 22 C 1.38736 * 120.68246 * 0.02562 * 21 20 19 23 23 C 1.36731 * 120.42189 * 359.97438 * 22 21 20 24 24 C 1.39413 * 119.71880 * 359.76660 * 23 22 21 25 25 H 1.08996 * 109.47119 * 64.50888 * 1 2 3 26 26 H 1.08993 * 109.47211 * 184.51361 * 1 2 3 27 27 H 1.08996 * 109.46458 * 304.51538 * 1 2 3 28 28 H 1.08999 * 109.46793 * 240.00164 * 2 1 3 29 29 H 1.08994 * 109.47276 * 120.00449 * 2 1 3 30 30 H 0.96993 * 120.00036 * 357.02048 * 8 7 5 31 31 H 1.00900 * 111.00292 * 150.12824 * 13 3 2 32 32 H 1.08997 * 109.47187 * 304.35257 * 14 13 3 33 33 H 1.09005 * 109.47207 * 64.34915 * 14 13 3 34 34 H 1.08997 * 109.47595 * 300.00223 * 15 14 13 35 35 H 1.08994 * 109.46824 * 60.00500 * 15 14 13 36 36 H 1.08007 * 124.92506 * 359.94816 * 17 16 15 37 37 H 1.08003 * 120.09607 * 359.97438 * 20 19 18 38 38 H 1.08004 * 119.65291 * 179.97438 * 21 20 19 39 39 H 1.08005 * 119.79023 * 180.02562 * 22 21 20 40 40 H 1.08000 * 120.14591 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 3.1295 1.4426 -0.0319 5 6 1.5741 2.1400 1.2519 6 1 0.8862 2.9698 1.1836 7 6 2.0261 1.7189 2.4846 8 7 3.0029 0.8418 2.5623 9 14 1.2508 2.3942 4.0443 10 1 1.9800 3.6153 4.4709 11 1 -0.1715 2.7326 3.7836 12 1 1.3273 1.3713 5.1180 13 7 1.5156 2.1474 -1.1773 14 6 2.3772 1.9312 -2.3474 15 6 1.8610 2.7651 -3.5217 16 6 2.7445 2.5429 -4.7222 17 6 3.7835 3.2965 -5.1072 18 8 4.3335 2.7909 -6.2251 19 6 3.6793 1.6815 -6.6233 20 6 3.8435 0.8052 -7.6889 21 6 2.9900 -0.2680 -7.8316 22 6 1.9655 -0.4836 -6.9213 23 6 1.7867 0.3669 -5.8657 24 6 2.6433 1.4546 -5.7018 25 1 -0.3633 0.4423 -0.9276 26 1 -0.3633 -1.0244 0.0809 27 1 -0.3632 0.5823 0.8468 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 3.3762 0.4587 1.7532 31 1 1.4025 3.1321 -0.9886 32 1 3.3970 2.2325 -2.1082 33 1 2.3644 0.8754 -2.6180 34 1 0.8412 2.4638 -3.7609 35 1 1.8740 3.8208 -3.2511 36 1 4.1288 4.1820 -4.5942 37 1 4.6370 0.9646 -8.4039 38 1 3.1197 -0.9473 -8.6611 39 1 1.3054 -1.3293 -7.0467 40 1 0.9880 0.1945 -5.1595 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255155011.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:34 Heat of formation + Delta-G solvation = 11.181995 kcal Electronic energy + Delta-G solvation = -20358.425871 eV Core-core repulsion = 17331.748468 eV Total energy + Delta-G solvation = -3026.677402 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.48125 -37.93018 -36.85512 -34.63634 -32.46594 -30.98976 -30.49496 -29.70705 -27.97607 -25.27493 -23.45643 -23.36861 -22.40781 -22.13428 -19.91630 -19.28695 -17.38783 -17.17593 -16.71364 -16.12347 -15.82287 -14.84699 -14.36473 -14.15811 -13.87483 -13.81019 -13.62753 -13.27695 -12.79956 -12.58821 -12.37682 -12.30313 -12.00967 -11.54540 -11.33850 -11.21997 -11.02386 -10.81239 -10.71341 -10.12992 -10.05938 -10.03927 -9.82541 -9.68101 -8.72186 -8.58756 -8.25628 -8.15198 -7.38320 -6.36882 -4.06858 0.84075 1.27378 2.30923 2.75672 3.41677 3.46783 3.61831 3.63245 4.40983 4.48810 4.53895 4.82710 4.87792 5.04747 5.21334 5.30877 5.36572 5.38578 5.47812 5.60221 5.75340 5.78540 5.91038 6.12199 6.20072 6.29433 6.32242 6.35115 6.43085 6.46415 6.49115 6.57742 6.62683 6.98146 7.07195 7.11669 7.24921 7.49429 7.53875 7.88534 8.10181 8.51940 8.58808 8.86854 9.64214 11.00593 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.030299 B = 0.003660 C = 0.003450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.912070 B = 7648.870335 C = 8114.508065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.105 4.105 3 C 0.204 3.796 4 H -0.008 1.008 5 C -0.596 4.596 6 H 0.054 0.946 7 C 0.023 3.977 8 N -0.910 5.910 9 Si 1.068 2.932 10 H -0.290 1.290 11 H -0.287 1.287 12 H -0.284 1.284 13 N -0.680 5.680 14 C 0.067 3.933 15 C -0.048 4.048 16 C -0.161 4.161 17 C -0.002 4.002 18 O -0.196 6.196 19 C 0.048 3.952 20 C -0.112 4.112 21 C -0.097 4.097 22 C -0.140 4.140 23 C -0.064 4.064 24 C -0.122 4.122 25 H 0.047 0.953 26 H 0.017 0.983 27 H 0.059 0.941 28 H 0.018 0.982 29 H 0.058 0.942 30 H 0.271 0.729 31 H 0.333 0.667 32 H 0.018 0.982 33 H 0.062 0.938 34 H 0.080 0.920 35 H 0.071 0.929 36 H 0.207 0.793 37 H 0.129 0.871 38 H 0.132 0.868 39 H 0.128 0.872 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.469 0.919 -18.879 18.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.144 4.144 3 C 0.096 3.904 4 H 0.009 0.991 5 C -0.635 4.635 6 H 0.072 0.928 7 C -0.182 4.182 8 N -0.546 5.546 9 Si 0.896 3.104 10 H -0.217 1.217 11 H -0.213 1.213 12 H -0.210 1.210 13 N -0.311 5.311 14 C -0.063 4.063 15 C -0.086 4.086 16 C -0.162 4.162 17 C -0.066 4.066 18 O -0.098 6.098 19 C 0.001 3.999 20 C -0.130 4.130 21 C -0.115 4.115 22 C -0.158 4.158 23 C -0.082 4.082 24 C -0.123 4.123 25 H 0.066 0.934 26 H 0.036 0.964 27 H 0.078 0.922 28 H 0.036 0.964 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.150 0.850 32 H 0.036 0.964 33 H 0.080 0.920 34 H 0.098 0.902 35 H 0.089 0.911 36 H 0.223 0.777 37 H 0.147 0.853 38 H 0.150 0.850 39 H 0.146 0.854 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -0.592 0.460 -17.516 17.532 hybrid contribution 0.706 0.551 -1.324 1.599 sum 0.114 1.011 -18.840 18.868 Atomic orbital electron populations 1.21421 0.96495 0.97807 1.01930 1.21486 0.96267 0.98352 0.98322 1.19238 0.92192 0.91317 0.87677 0.99073 1.21974 1.31184 1.18553 0.91764 0.92803 1.25714 0.94792 0.96053 1.01623 1.70764 1.22084 1.28884 1.32842 0.83567 0.75585 0.75889 0.75323 1.21656 1.21338 1.21012 1.60615 1.49573 1.15845 1.05018 1.21885 0.94279 0.99334 0.90838 1.20015 0.97830 1.00476 0.90233 1.21226 1.00073 0.95927 0.99019 1.23778 0.95157 1.00332 0.87378 1.83989 1.51316 1.35860 1.38600 1.19664 0.93772 0.88948 0.97513 1.19899 1.02088 0.94354 0.96656 1.20907 0.94655 0.96515 0.99386 1.20779 0.99302 1.00281 0.95449 1.20394 0.97931 0.92442 0.97448 1.19879 0.98212 0.97843 0.96364 0.93413 0.96398 0.92155 0.96363 0.92384 0.91799 0.84997 0.96360 0.91982 0.90171 0.91065 0.77693 0.85291 0.84983 0.85409 0.85281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.61 9.52 37.16 0.35 -2.25 16 2 C -0.11 -2.51 5.49 -26.73 -0.15 -2.66 16 3 C 0.20 5.03 1.93 -68.86 -0.13 4.90 16 4 H -0.01 -0.22 7.08 -51.94 -0.37 -0.59 16 5 C -0.60 -16.09 7.24 -34.44 -0.25 -16.34 16 6 H 0.05 1.45 7.67 -52.49 -0.40 1.05 16 7 C 0.02 0.64 5.18 -17.82 -0.09 0.55 16 8 N -0.91 -26.92 13.04 55.43 0.72 -26.20 16 9 Si 1.07 24.84 29.92 -169.99 -5.09 19.75 16 10 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 12 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 13 N -0.68 -14.01 5.58 -107.95 -0.60 -14.62 16 14 C 0.07 1.19 5.52 -3.82 -0.02 1.17 16 15 C -0.05 -0.68 5.98 -27.88 -0.17 -0.85 16 16 C -0.16 -2.24 5.61 -102.66 -0.58 -2.81 16 17 C 0.00 -0.03 11.89 29.24 0.35 0.32 16 18 O -0.20 -2.67 10.58 3.90 0.04 -2.63 16 19 C 0.05 0.66 7.42 -38.47 -0.29 0.37 16 20 C -0.11 -1.23 10.07 -39.46 -0.40 -1.63 16 21 C -0.10 -0.93 10.01 -39.54 -0.40 -1.33 16 22 C -0.14 -1.47 9.98 -39.94 -0.40 -1.87 16 23 C -0.06 -0.81 10.05 -39.69 -0.40 -1.21 16 24 C -0.12 -1.73 6.38 -105.16 -0.67 -2.40 16 25 H 0.05 0.99 7.70 -51.93 -0.40 0.59 16 26 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.06 1.42 7.12 -51.93 -0.37 1.05 16 28 H 0.02 0.40 7.64 -51.93 -0.40 0.00 16 29 H 0.06 1.51 6.37 -51.93 -0.33 1.18 16 30 H 0.27 8.04 6.03 -40.82 -0.25 7.79 16 31 H 0.33 6.73 8.18 -39.29 -0.32 6.41 16 32 H 0.02 0.34 7.95 -51.93 -0.41 -0.07 16 33 H 0.06 1.17 7.64 -51.93 -0.40 0.77 16 34 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 35 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.21 1.85 8.06 -52.48 -0.42 1.43 16 37 H 0.13 1.12 8.06 -52.48 -0.42 0.69 16 38 H 0.13 0.87 8.06 -52.48 -0.42 0.45 16 39 H 0.13 1.03 8.06 -52.48 -0.42 0.61 16 40 H 0.13 1.55 8.06 -52.49 -0.42 1.13 16 LS Contribution 330.80 15.07 4.99 4.99 Total: -1.00 -30.48 330.80 -8.99 -39.48 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: -5.82 Total: 5.28 kcal Atomic # 6 Polarization: -22.81 SS G_CDS: -3.23 Total: -26.04 kcal Atomic # 7 Polarization: -40.94 SS G_CDS: 0.12 Total: -40.82 kcal Atomic # 8 Polarization: -2.67 SS G_CDS: 0.04 Total: -2.63 kcal Atomic # 14 Polarization: 24.84 SS G_CDS: -5.09 Total: 19.75 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -30.48 -8.99 -39.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255155011.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.658 kcal (2) G-P(sol) polarization free energy of solvation -30.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.476 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds