Wall clock time and date at job start Mon Mar 30 2020 02:38:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.47356 * 2 1 4 4 H 1.08988 * 109.47429 * 181.77830 * 3 2 1 5 5 C 1.50702 * 109.47055 * 61.77834 * 3 2 1 6 6 H 1.07998 * 119.99919 * 244.98017 * 5 3 2 7 7 C 1.37882 * 119.99674 * 64.97803 * 5 3 2 8 8 N 1.31511 * 120.00018 * 9.71169 * 7 5 3 9 9 Si 1.86804 * 119.99766 * 189.70989 * 7 5 3 10 10 H 1.48494 * 109.47291 * 270.00321 * 9 7 5 11 11 H 1.48502 * 109.47147 * 30.00385 * 9 7 5 12 12 H 1.48500 * 109.46898 * 149.99865 * 9 7 5 13 13 N 1.46906 * 109.47337 * 301.78283 * 3 2 1 14 14 C 1.46901 * 110.99613 * 274.08049 * 13 3 2 15 15 C 1.53001 * 109.46884 * 184.34783 * 14 13 3 16 16 C 1.50699 * 109.47075 * 180.02562 * 15 14 13 17 17 C 1.33997 * 126.90724 * 265.03199 * 16 15 14 18 18 O 1.34452 * 110.15627 * 179.97438 * 17 16 15 19 19 C 1.34809 * 110.88864 * 359.97438 * 18 17 16 20 20 C 1.38933 * 133.49394 * 180.02562 * 19 18 17 21 21 C 1.37856 * 119.81712 * 180.02562 * 20 19 18 22 22 C 1.38736 * 120.68246 * 0.02562 * 21 20 19 23 23 C 1.36731 * 120.42189 * 359.97438 * 22 21 20 24 24 C 1.39413 * 119.71880 * 359.76660 * 23 22 21 25 25 H 1.08996 * 109.47119 * 64.50888 * 1 2 3 26 26 H 1.08993 * 109.47211 * 184.51361 * 1 2 3 27 27 H 1.08996 * 109.46458 * 304.51538 * 1 2 3 28 28 H 1.08999 * 109.46793 * 240.00164 * 2 1 3 29 29 H 1.08994 * 109.47276 * 120.00449 * 2 1 3 30 30 H 0.96993 * 120.00036 * 357.02048 * 8 7 5 31 31 H 1.00900 * 111.00292 * 150.12824 * 13 3 2 32 32 H 1.08997 * 109.47187 * 304.35257 * 14 13 3 33 33 H 1.09005 * 109.47207 * 64.34915 * 14 13 3 34 34 H 1.08997 * 109.47595 * 300.00223 * 15 14 13 35 35 H 1.08994 * 109.46824 * 60.00500 * 15 14 13 36 36 H 1.08007 * 124.92506 * 359.94816 * 17 16 15 37 37 H 1.08003 * 120.09607 * 359.97438 * 20 19 18 38 38 H 1.08004 * 119.65291 * 179.97438 * 21 20 19 39 39 H 1.08005 * 119.79023 * 180.02562 * 22 21 20 40 40 H 1.08000 * 120.14591 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 3.1295 1.4426 -0.0319 5 6 1.5741 2.1400 1.2519 6 1 0.8862 2.9698 1.1836 7 6 2.0261 1.7189 2.4846 8 7 3.0029 0.8418 2.5623 9 14 1.2508 2.3942 4.0443 10 1 1.9800 3.6153 4.4709 11 1 -0.1715 2.7326 3.7836 12 1 1.3273 1.3713 5.1180 13 7 1.5156 2.1474 -1.1773 14 6 2.3772 1.9312 -2.3474 15 6 1.8610 2.7651 -3.5217 16 6 2.7445 2.5429 -4.7222 17 6 3.7835 3.2965 -5.1072 18 8 4.3335 2.7909 -6.2251 19 6 3.6793 1.6815 -6.6233 20 6 3.8435 0.8052 -7.6889 21 6 2.9900 -0.2680 -7.8316 22 6 1.9655 -0.4836 -6.9213 23 6 1.7867 0.3669 -5.8657 24 6 2.6433 1.4546 -5.7018 25 1 -0.3633 0.4423 -0.9276 26 1 -0.3633 -1.0244 0.0809 27 1 -0.3632 0.5823 0.8468 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 3.3762 0.4587 1.7532 31 1 1.4025 3.1321 -0.9886 32 1 3.3970 2.2325 -2.1082 33 1 2.3644 0.8754 -2.6180 34 1 0.8412 2.4638 -3.7609 35 1 1.8740 3.8208 -3.2511 36 1 4.1288 4.1820 -4.5942 37 1 4.6370 0.9646 -8.4039 38 1 3.1197 -0.9473 -8.6611 39 1 1.3054 -1.3293 -7.0467 40 1 0.9880 0.1945 -5.1595 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255155011.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:34 Heat of formation + Delta-G solvation = -5.808576 kcal Electronic energy + Delta-G solvation = -20359.162637 eV Core-core repulsion = 17331.748468 eV Total energy + Delta-G solvation = -3027.414169 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.43372 -38.79416 -38.61872 -36.07335 -34.09754 -32.70003 -31.46719 -30.77394 -29.33673 -27.13332 -25.38442 -24.30913 -23.66917 -23.21523 -21.23460 -20.94837 -18.96661 -18.27881 -17.90587 -17.13945 -16.68417 -16.43199 -16.05978 -15.69399 -15.35317 -15.13892 -14.78828 -14.71931 -14.28612 -14.03978 -13.72268 -13.26538 -13.18808 -13.01133 -12.92933 -12.78234 -12.64236 -12.33866 -11.93810 -11.91137 -11.82596 -11.71090 -11.59313 -10.88988 -10.64935 -10.33103 -9.62510 -9.16981 -9.11682 -8.58600 -6.29015 -0.04539 0.37558 1.32757 1.54552 1.63175 1.80413 1.85126 2.57795 2.74638 3.22034 3.40656 3.50188 3.75754 3.89206 4.12048 4.21462 4.28556 4.35627 4.40324 4.44812 4.48368 4.54656 4.62458 4.64512 4.74961 4.82501 4.97916 5.09566 5.13867 5.20846 5.26781 5.34556 5.36916 5.46824 5.51643 5.54595 5.68588 5.71046 5.89556 6.08842 6.17601 6.48664 6.60058 6.83082 7.50997 8.78690 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.030299 B = 0.003660 C = 0.003450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.912070 B = 7648.870335 C = 8114.508065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.101 4.101 3 C 0.207 3.793 4 H -0.045 1.045 5 C -0.599 4.599 6 H 0.054 0.946 7 C -0.026 4.026 8 N -0.936 5.936 9 Si 1.113 2.887 10 H -0.277 1.277 11 H -0.269 1.269 12 H -0.287 1.287 13 N -0.672 5.672 14 C 0.075 3.925 15 C -0.030 4.030 16 C -0.188 4.188 17 C 0.006 3.994 18 O -0.205 6.205 19 C 0.021 3.979 20 C -0.116 4.116 21 C -0.091 4.091 22 C -0.136 4.136 23 C -0.089 4.089 24 C -0.148 4.148 25 H 0.058 0.942 26 H 0.039 0.961 27 H 0.041 0.959 28 H 0.027 0.973 29 H 0.030 0.970 30 H 0.257 0.743 31 H 0.336 0.664 32 H 0.005 0.995 33 H 0.048 0.952 34 H 0.079 0.921 35 H 0.087 0.913 36 H 0.236 0.764 37 H 0.152 0.848 38 H 0.170 0.830 39 H 0.154 0.846 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.346 1.096 -20.337 20.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.140 4.140 3 C 0.098 3.902 4 H -0.028 1.028 5 C -0.637 4.637 6 H 0.072 0.928 7 C -0.225 4.225 8 N -0.573 5.573 9 Si 0.935 3.065 10 H -0.202 1.202 11 H -0.194 1.194 12 H -0.213 1.213 13 N -0.302 5.302 14 C -0.055 4.055 15 C -0.068 4.068 16 C -0.190 4.190 17 C -0.059 4.059 18 O -0.107 6.107 19 C -0.026 4.026 20 C -0.135 4.135 21 C -0.108 4.108 22 C -0.154 4.154 23 C -0.107 4.107 24 C -0.149 4.149 25 H 0.077 0.923 26 H 0.058 0.942 27 H 0.060 0.940 28 H 0.046 0.954 29 H 0.048 0.952 30 H 0.067 0.933 31 H 0.154 0.846 32 H 0.024 0.976 33 H 0.067 0.933 34 H 0.098 0.902 35 H 0.105 0.895 36 H 0.252 0.748 37 H 0.170 0.830 38 H 0.187 0.813 39 H 0.172 0.828 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -1.476 0.646 -19.010 19.078 hybrid contribution 1.011 0.446 -0.998 1.489 sum -0.466 1.092 -20.008 20.043 Atomic orbital electron populations 1.21302 0.94598 0.99028 1.01594 1.21383 0.97803 0.97430 0.97369 1.19082 0.90055 0.92315 0.88757 1.02751 1.22253 1.30448 1.18315 0.92693 0.92771 1.27076 0.94511 0.95764 1.05109 1.70885 1.23756 1.30571 1.32107 0.82985 0.75879 0.75667 0.71933 1.20248 1.19382 1.21301 1.60542 1.49663 1.15742 1.04279 1.21830 0.93329 0.99336 0.91010 1.19786 0.97657 1.00504 0.88851 1.21246 1.01185 0.97107 0.99438 1.24358 0.94207 1.00564 0.86722 1.83978 1.51577 1.36141 1.38955 1.20124 0.94198 0.89636 0.98624 1.20353 1.02850 0.94010 0.96247 1.21383 0.93372 0.96252 0.99817 1.21175 0.99564 1.00179 0.94446 1.20578 0.98324 0.93122 0.98726 1.20162 0.99154 0.98587 0.96956 0.92288 0.94171 0.94017 0.95428 0.95176 0.93292 0.84619 0.97633 0.93325 0.90213 0.89454 0.74751 0.83026 0.81259 0.82809 0.85572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.63 9.52 71.98 0.69 -3.94 16 2 C -0.10 -4.88 5.49 30.60 0.17 -4.71 16 3 C 0.21 10.43 1.93 44.17 0.09 10.52 16 4 H -0.04 -2.56 7.08 -2.39 -0.02 -2.58 16 5 C -0.60 -32.54 7.24 25.60 0.19 -32.36 16 6 H 0.05 2.89 7.67 -2.91 -0.02 2.87 16 7 C -0.03 -1.45 5.18 84.66 0.44 -1.01 16 8 N -0.94 -56.70 13.04 21.45 0.28 -56.42 16 9 Si 1.11 49.67 29.92 68.60 2.05 51.72 16 10 H -0.28 -11.70 7.11 99.48 0.71 -11.00 16 11 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 12 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 13 N -0.67 -27.74 5.58 -495.45 -2.76 -30.51 16 14 C 0.07 2.69 5.52 86.30 0.48 3.17 16 15 C -0.03 -0.85 5.98 29.85 0.18 -0.67 16 16 C -0.19 -5.19 5.61 -18.60 -0.10 -5.30 16 17 C 0.01 0.14 11.89 66.85 0.79 0.93 16 18 O -0.20 -5.47 10.58 -8.95 -0.09 -5.56 16 19 C 0.02 0.56 7.42 22.99 0.17 0.73 16 20 C -0.12 -2.35 10.07 22.35 0.23 -2.12 16 21 C -0.09 -1.50 10.01 22.30 0.22 -1.28 16 22 C -0.14 -2.58 9.98 22.04 0.22 -2.36 16 23 C -0.09 -2.23 10.05 22.20 0.22 -2.01 16 24 C -0.15 -4.17 6.38 -20.21 -0.13 -4.30 16 25 H 0.06 2.37 7.70 -2.39 -0.02 2.35 16 26 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 27 H 0.04 1.92 7.12 -2.39 -0.02 1.91 16 28 H 0.03 1.24 7.64 -2.39 -0.02 1.22 16 29 H 0.03 1.60 6.37 -2.39 -0.02 1.59 16 30 H 0.26 15.90 6.03 -92.71 -0.56 15.34 16 31 H 0.34 13.48 8.18 -89.69 -0.73 12.75 16 32 H 0.01 0.21 7.95 -2.39 -0.02 0.19 16 33 H 0.05 1.87 7.64 -2.38 -0.02 1.86 16 34 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 35 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 36 H 0.24 3.86 8.06 -2.91 -0.02 3.84 16 37 H 0.15 2.25 8.06 -2.91 -0.02 2.23 16 38 H 0.17 1.49 8.06 -2.91 -0.02 1.47 16 39 H 0.15 2.03 8.06 -2.91 -0.02 2.01 16 40 H 0.13 3.06 8.06 -2.91 -0.02 3.04 16 Total: -1.00 -66.98 330.80 3.82 -63.16 By element: Atomic # 1 Polarization: 21.81 SS G_CDS: 0.51 Total: 22.32 kcal Atomic # 6 Polarization: -48.56 SS G_CDS: 3.84 Total: -44.72 kcal Atomic # 7 Polarization: -84.44 SS G_CDS: -2.49 Total: -86.93 kcal Atomic # 8 Polarization: -5.47 SS G_CDS: -0.09 Total: -5.56 kcal Atomic # 14 Polarization: 49.67 SS G_CDS: 2.05 Total: 51.72 kcal Total: -66.98 3.82 -63.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255155011.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.355 kcal (2) G-P(sol) polarization free energy of solvation -66.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds