Wall clock time and date at job start Mon Mar 30 2020 02:38:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.46889 * 2 1 4 4 H 1.08995 * 109.46987 * 179.82845 * 3 2 1 5 5 C 1.50705 * 109.47114 * 299.83028 * 3 2 1 6 6 H 1.08002 * 119.99780 * 119.99989 * 5 3 2 7 7 C 1.37873 * 119.99721 * 300.00083 * 5 3 2 8 8 N 1.31519 * 120.00440 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 120.00012 * 180.02562 * 7 5 3 10 10 H 1.48509 * 109.46819 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47461 * 119.99932 * 9 7 5 12 12 H 1.48500 * 109.47261 * 240.00308 * 9 7 5 13 13 N 1.46906 * 109.47103 * 59.82910 * 3 2 1 14 14 C 1.46899 * 110.99515 * 85.93259 * 13 3 2 15 15 C 1.53000 * 109.46630 * 175.52435 * 14 13 3 16 16 C 1.50703 * 109.47269 * 180.02562 * 15 14 13 17 17 C 1.33997 * 126.90003 * 265.02425 * 16 15 14 18 18 O 1.34448 * 110.14805 * 179.97438 * 17 16 15 19 19 C 1.34810 * 110.89330 * 0.02562 * 18 17 16 20 20 C 1.38943 * 133.49521 * 180.02562 * 19 18 17 21 21 C 1.37847 * 119.81753 * 179.97438 * 20 19 18 22 22 C 1.38742 * 120.68328 * 0.02562 * 21 20 19 23 23 C 1.36741 * 120.42098 * 359.97248 * 22 21 20 24 24 C 1.39407 * 119.71348 * 359.76535 * 23 22 21 25 25 H 1.09000 * 109.47060 * 175.59160 * 1 2 3 26 26 H 1.08998 * 109.47578 * 55.58773 * 1 2 3 27 27 H 1.09003 * 109.47113 * 295.58871 * 1 2 3 28 28 H 1.09000 * 109.47001 * 120.00063 * 2 1 3 29 29 H 1.08996 * 109.46929 * 239.99902 * 2 1 3 30 30 H 0.96999 * 119.99910 * 180.02562 * 8 7 5 31 31 H 1.00892 * 110.99405 * 209.88938 * 13 3 2 32 32 H 1.08995 * 109.47219 * 295.52135 * 14 13 3 33 33 H 1.08999 * 109.47280 * 55.52811 * 14 13 3 34 34 H 1.09007 * 109.47640 * 300.00130 * 15 14 13 35 35 H 1.09000 * 109.47720 * 60.00124 * 15 14 13 36 36 H 1.07998 * 124.93003 * 359.95834 * 17 16 15 37 37 H 1.08000 * 120.08993 * 359.96983 * 20 19 18 38 38 H 1.07995 * 119.65702 * 179.97438 * 21 20 19 39 39 H 1.07999 * 119.79207 * 180.02562 * 22 21 20 40 40 H 1.08001 * 120.14523 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1299 1.4425 0.0031 5 6 1.5411 2.1517 -1.2326 6 1 0.9198 3.0299 -1.1361 7 6 1.8777 1.6794 -2.4834 8 7 2.6337 0.6097 -2.6009 9 14 1.2599 2.5588 -4.0113 10 1 0.4336 3.7259 -3.6105 11 1 2.4174 3.0243 -4.8166 12 1 0.4368 1.6250 -4.8212 13 7 1.5469 2.1362 1.1974 14 6 2.4394 1.9095 2.3420 15 6 1.9563 2.7346 3.5365 16 6 2.8722 2.5027 4.7106 17 6 2.6982 1.6213 5.7048 18 8 3.7206 1.6967 6.5747 19 6 4.6115 2.6323 6.1896 20 6 5.8099 3.0892 6.7240 21 6 6.5121 4.0853 6.0800 22 6 6.0347 4.6392 4.9009 23 6 4.8575 4.2038 4.3582 24 6 4.1362 3.1934 4.9925 25 1 -0.3633 -1.0246 -0.0790 26 1 -0.3634 0.5808 -0.8478 27 1 -0.3633 0.4439 0.9269 28 1 1.8934 -0.5138 0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 2.8708 0.2777 -3.4810 31 1 1.4286 3.1225 1.0208 32 1 2.4321 0.8517 2.6044 33 1 3.4529 2.2115 2.0779 34 1 1.9635 3.7926 3.2741 35 1 0.9428 2.4328 3.8007 36 1 1.8585 0.9482 5.7946 37 1 6.1901 2.6651 7.6416 38 1 7.4431 4.4388 6.4979 39 1 6.5968 5.4187 4.4080 40 1 4.4903 4.6378 3.4400 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255155018.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:38 Heat of formation + Delta-G solvation = 15.281069 kcal Electronic energy + Delta-G solvation = -20296.664122 eV Core-core repulsion = 17270.164469 eV Total energy + Delta-G solvation = -3026.499653 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.43553 -37.89251 -36.63205 -34.45433 -32.37125 -30.94618 -30.43900 -29.64583 -27.92844 -25.70884 -23.37709 -23.14384 -22.34979 -22.13561 -19.84957 -18.98502 -17.34741 -16.96869 -16.32387 -16.04021 -15.77703 -14.95766 -14.56961 -14.15053 -13.88529 -13.72230 -13.46349 -13.21349 -12.61719 -12.37651 -12.33187 -12.10340 -11.94880 -11.73080 -11.35915 -11.03245 -10.95374 -10.73068 -10.64409 -10.37713 -10.07344 -9.85826 -9.63284 -9.35448 -8.75616 -8.68180 -8.46511 -8.12473 -7.22842 -6.01407 -4.07071 0.88053 1.31071 2.36151 2.80234 3.28235 3.36597 3.40065 3.66874 4.40057 4.45856 4.57431 4.86392 4.91935 5.12762 5.26903 5.31321 5.34232 5.41444 5.59011 5.67907 5.74405 5.96452 5.98253 6.16161 6.23302 6.37533 6.46745 6.48927 6.54104 6.58203 6.62197 6.69898 6.86973 7.16245 7.24606 7.34055 7.50849 7.75234 7.80312 7.86226 8.28180 8.40134 8.68567 9.02864 9.57842 11.04497 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.024946 B = 0.003796 C = 0.003479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.135136 B = 7373.663422 C = 8045.492577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.103 4.103 3 C 0.215 3.785 4 H 0.000 1.000 5 C -0.512 4.512 6 H 0.059 0.941 7 C 0.063 3.937 8 N -0.889 5.889 9 Si 0.892 3.108 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.284 1.284 13 N -0.686 5.686 14 C 0.068 3.932 15 C -0.048 4.048 16 C -0.160 4.160 17 C -0.001 4.001 18 O -0.197 6.197 19 C 0.048 3.952 20 C -0.111 4.111 21 C -0.097 4.097 22 C -0.140 4.140 23 C -0.065 4.065 24 C -0.123 4.123 25 H 0.013 0.987 26 H 0.056 0.944 27 H 0.041 0.959 28 H 0.009 0.991 29 H 0.086 0.914 30 H 0.260 0.740 31 H 0.329 0.671 32 H 0.062 0.938 33 H 0.019 0.981 34 H 0.069 0.931 35 H 0.080 0.920 36 H 0.208 0.792 37 H 0.129 0.871 38 H 0.132 0.868 39 H 0.128 0.872 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.161 5.043 16.780 18.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.141 4.141 3 C 0.108 3.892 4 H 0.017 0.983 5 C -0.550 4.550 6 H 0.078 0.922 7 C -0.139 4.139 8 N -0.528 5.528 9 Si 0.720 3.280 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.210 1.210 13 N -0.317 5.317 14 C -0.062 4.062 15 C -0.086 4.086 16 C -0.162 4.162 17 C -0.065 4.065 18 O -0.098 6.098 19 C 0.001 3.999 20 C -0.130 4.130 21 C -0.115 4.115 22 C -0.158 4.158 23 C -0.083 4.083 24 C -0.124 4.124 25 H 0.032 0.968 26 H 0.075 0.925 27 H 0.060 0.940 28 H 0.027 0.973 29 H 0.104 0.896 30 H 0.070 0.930 31 H 0.146 0.854 32 H 0.080 0.920 33 H 0.037 0.963 34 H 0.088 0.912 35 H 0.099 0.901 36 H 0.224 0.776 37 H 0.147 0.853 38 H 0.150 0.850 39 H 0.146 0.854 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 3.843 4.254 17.035 17.974 hybrid contribution 0.457 0.889 -1.285 1.628 sum 4.301 5.143 15.750 17.118 Atomic orbital electron populations 1.21445 0.97515 0.97373 1.01291 1.21428 0.95010 0.98295 0.99391 1.19143 0.92924 0.91495 0.85673 0.98279 1.21235 1.31516 1.11936 0.90352 0.92240 1.24894 0.95062 0.95009 0.98935 1.69900 1.36734 1.22757 1.23359 0.86531 0.78567 0.79713 0.83145 1.19756 1.21160 1.21007 1.60734 1.48944 1.15718 1.06296 1.21858 0.94316 0.99093 0.90941 1.20040 0.96849 1.00770 0.90956 1.21250 0.96381 0.99324 0.99252 1.23789 0.91785 1.01234 0.89728 1.83986 1.29073 1.49930 1.46824 1.19654 0.92986 0.91914 0.95340 1.19895 0.92052 0.99430 1.01609 1.20897 0.99454 0.95733 0.95430 1.20777 0.96704 1.01536 0.96788 1.20376 0.94045 0.94658 0.99197 1.19900 0.96310 0.99726 0.96426 0.96827 0.92517 0.93991 0.97268 0.89577 0.93029 0.85405 0.91971 0.96317 0.91227 0.90130 0.77566 0.85309 0.85011 0.85442 0.85436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.67 9.52 37.16 0.35 -2.31 16 2 C -0.10 -2.51 5.59 -26.73 -0.15 -2.66 16 3 C 0.22 5.35 2.30 -68.86 -0.16 5.19 16 4 H 0.00 -0.01 7.71 -51.93 -0.40 -0.41 16 5 C -0.51 -13.66 7.26 -34.44 -0.25 -13.91 16 6 H 0.06 1.57 7.60 -52.49 -0.40 1.17 16 7 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 8 N -0.89 -25.19 11.32 55.43 0.63 -24.57 16 9 Si 0.89 21.05 29.54 -169.99 -5.02 16.03 16 10 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 11 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 13 N -0.69 -14.16 5.65 -107.95 -0.61 -14.77 16 14 C 0.07 1.22 5.52 -3.82 -0.02 1.20 16 15 C -0.05 -0.69 5.98 -27.88 -0.17 -0.86 16 16 C -0.16 -2.24 5.61 -102.66 -0.58 -2.82 16 17 C 0.00 -0.01 11.89 29.24 0.35 0.34 16 18 O -0.20 -2.68 10.58 3.91 0.04 -2.64 16 19 C 0.05 0.66 7.42 -38.47 -0.29 0.38 16 20 C -0.11 -1.25 10.07 -39.46 -0.40 -1.64 16 21 C -0.10 -0.96 10.01 -39.54 -0.40 -1.36 16 22 C -0.14 -1.51 9.98 -39.94 -0.40 -1.91 16 23 C -0.06 -0.84 10.05 -39.69 -0.40 -1.24 16 24 C -0.12 -1.76 6.38 -105.16 -0.67 -2.43 16 25 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 26 H 0.06 1.36 7.07 -51.93 -0.37 1.00 16 27 H 0.04 0.89 7.74 -51.93 -0.40 0.48 16 28 H 0.01 0.20 7.61 -51.93 -0.39 -0.19 16 29 H 0.09 2.34 6.06 -51.93 -0.31 2.03 16 30 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 31 H 0.33 6.61 8.14 -39.30 -0.32 6.29 16 32 H 0.06 1.16 7.61 -51.93 -0.40 0.76 16 33 H 0.02 0.36 7.94 -51.93 -0.41 -0.05 16 34 H 0.07 0.97 8.14 -51.92 -0.42 0.54 16 35 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.21 1.84 8.06 -52.49 -0.42 1.42 16 37 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 38 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 39 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 40 H 0.13 1.56 8.06 -52.49 -0.42 1.14 16 LS Contribution 331.81 15.07 5.00 5.00 Total: -1.00 -29.57 331.81 -9.15 -38.72 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: -5.92 Total: 4.65 kcal Atomic # 6 Polarization: -19.16 SS G_CDS: -3.26 Total: -22.42 kcal Atomic # 7 Polarization: -39.35 SS G_CDS: 0.02 Total: -39.33 kcal Atomic # 8 Polarization: -2.68 SS G_CDS: 0.04 Total: -2.64 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -29.57 -9.15 -38.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255155018.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.998 kcal (2) G-P(sol) polarization free energy of solvation -29.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.717 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds