Wall clock time and date at job start Mon Mar 30 2020 02:38:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.46889 * 2 1 4 4 H 1.08995 * 109.46987 * 179.82845 * 3 2 1 5 5 C 1.50705 * 109.47114 * 299.83028 * 3 2 1 6 6 H 1.08002 * 119.99780 * 119.99989 * 5 3 2 7 7 C 1.37873 * 119.99721 * 300.00083 * 5 3 2 8 8 N 1.31519 * 120.00440 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 120.00012 * 180.02562 * 7 5 3 10 10 H 1.48509 * 109.46819 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47461 * 119.99932 * 9 7 5 12 12 H 1.48500 * 109.47261 * 240.00308 * 9 7 5 13 13 N 1.46906 * 109.47103 * 59.82910 * 3 2 1 14 14 C 1.46899 * 110.99515 * 85.93259 * 13 3 2 15 15 C 1.53000 * 109.46630 * 175.52435 * 14 13 3 16 16 C 1.50703 * 109.47269 * 180.02562 * 15 14 13 17 17 C 1.33997 * 126.90003 * 265.02425 * 16 15 14 18 18 O 1.34448 * 110.14805 * 179.97438 * 17 16 15 19 19 C 1.34810 * 110.89330 * 0.02562 * 18 17 16 20 20 C 1.38943 * 133.49521 * 180.02562 * 19 18 17 21 21 C 1.37847 * 119.81753 * 179.97438 * 20 19 18 22 22 C 1.38742 * 120.68328 * 0.02562 * 21 20 19 23 23 C 1.36741 * 120.42098 * 359.97248 * 22 21 20 24 24 C 1.39407 * 119.71348 * 359.76535 * 23 22 21 25 25 H 1.09000 * 109.47060 * 175.59160 * 1 2 3 26 26 H 1.08998 * 109.47578 * 55.58773 * 1 2 3 27 27 H 1.09003 * 109.47113 * 295.58871 * 1 2 3 28 28 H 1.09000 * 109.47001 * 120.00063 * 2 1 3 29 29 H 1.08996 * 109.46929 * 239.99902 * 2 1 3 30 30 H 0.96999 * 119.99910 * 180.02562 * 8 7 5 31 31 H 1.00892 * 110.99405 * 209.88938 * 13 3 2 32 32 H 1.08995 * 109.47219 * 295.52135 * 14 13 3 33 33 H 1.08999 * 109.47280 * 55.52811 * 14 13 3 34 34 H 1.09007 * 109.47640 * 300.00130 * 15 14 13 35 35 H 1.09000 * 109.47720 * 60.00124 * 15 14 13 36 36 H 1.07998 * 124.93003 * 359.95834 * 17 16 15 37 37 H 1.08000 * 120.08993 * 359.96983 * 20 19 18 38 38 H 1.07995 * 119.65702 * 179.97438 * 21 20 19 39 39 H 1.07999 * 119.79207 * 180.02562 * 22 21 20 40 40 H 1.08001 * 120.14523 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1299 1.4425 0.0031 5 6 1.5411 2.1517 -1.2326 6 1 0.9198 3.0299 -1.1361 7 6 1.8777 1.6794 -2.4834 8 7 2.6337 0.6097 -2.6009 9 14 1.2599 2.5588 -4.0113 10 1 0.4336 3.7259 -3.6105 11 1 2.4174 3.0243 -4.8166 12 1 0.4368 1.6250 -4.8212 13 7 1.5469 2.1362 1.1974 14 6 2.4394 1.9095 2.3420 15 6 1.9563 2.7346 3.5365 16 6 2.8722 2.5027 4.7106 17 6 2.6982 1.6213 5.7048 18 8 3.7206 1.6967 6.5747 19 6 4.6115 2.6323 6.1896 20 6 5.8099 3.0892 6.7240 21 6 6.5121 4.0853 6.0800 22 6 6.0347 4.6392 4.9009 23 6 4.8575 4.2038 4.3582 24 6 4.1362 3.1934 4.9925 25 1 -0.3633 -1.0246 -0.0790 26 1 -0.3634 0.5808 -0.8478 27 1 -0.3633 0.4439 0.9269 28 1 1.8934 -0.5138 0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 2.8708 0.2777 -3.4810 31 1 1.4286 3.1225 1.0208 32 1 2.4321 0.8517 2.6044 33 1 3.4529 2.2115 2.0779 34 1 1.9635 3.7926 3.2741 35 1 0.9428 2.4328 3.8007 36 1 1.8585 0.9482 5.7946 37 1 6.1901 2.6651 7.6416 38 1 7.4431 4.4388 6.4979 39 1 6.5968 5.4187 4.4080 40 1 4.4903 4.6378 3.4400 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255155018.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:38 Heat of formation + Delta-G solvation = -0.877601 kcal Electronic energy + Delta-G solvation = -20297.364815 eV Core-core repulsion = 17270.164469 eV Total energy + Delta-G solvation = -3027.200346 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.39587 -38.77341 -38.36232 -35.88532 -34.04541 -32.61210 -31.44241 -30.74081 -29.34880 -27.52395 -25.08911 -24.28616 -23.63428 -23.20121 -20.97743 -20.83551 -18.41415 -18.22625 -17.86788 -17.07573 -16.91801 -16.58556 -16.15608 -15.44706 -15.30621 -14.99942 -14.72701 -14.69766 -14.10781 -13.88346 -13.56920 -13.38129 -13.23942 -12.98023 -12.83671 -12.73085 -12.48692 -12.38975 -12.21069 -11.94242 -11.68862 -11.57971 -11.30810 -10.84836 -10.75217 -10.53930 -9.60562 -9.09146 -9.02058 -8.09556 -6.22333 -0.02062 0.39158 1.37425 1.41222 1.43831 1.54628 1.88980 2.42820 2.75976 3.19092 3.50175 3.56379 3.78564 4.01200 4.14379 4.22849 4.34115 4.45005 4.48584 4.53495 4.63999 4.66181 4.72000 4.80043 4.89813 4.96609 5.12147 5.17701 5.28820 5.31428 5.37881 5.42217 5.49559 5.53134 5.57701 5.71890 5.72915 5.83177 5.90073 6.20854 6.28288 6.48773 6.79935 7.04064 7.46806 8.95843 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.024946 B = 0.003796 C = 0.003479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.135136 B = 7373.663422 C = 8045.492577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.099 4.099 3 C 0.220 3.780 4 H -0.042 1.042 5 C -0.522 4.522 6 H 0.060 0.940 7 C 0.015 3.985 8 N -0.919 5.919 9 Si 0.956 3.044 10 H -0.264 1.264 11 H -0.284 1.284 12 H -0.282 1.282 13 N -0.677 5.677 14 C 0.076 3.924 15 C -0.031 4.031 16 C -0.189 4.189 17 C 0.010 3.990 18 O -0.204 6.204 19 C 0.022 3.978 20 C -0.115 4.115 21 C -0.092 4.092 22 C -0.137 4.137 23 C -0.092 4.092 24 C -0.149 4.149 25 H 0.032 0.968 26 H 0.036 0.964 27 H 0.055 0.945 28 H 0.017 0.983 29 H 0.056 0.944 30 H 0.260 0.740 31 H 0.333 0.667 32 H 0.055 0.945 33 H -0.002 1.002 34 H 0.070 0.930 35 H 0.095 0.905 36 H 0.240 0.760 37 H 0.153 0.847 38 H 0.170 0.830 39 H 0.152 0.848 40 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.968 5.809 17.993 19.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.138 4.138 3 C 0.112 3.888 4 H -0.025 1.025 5 C -0.561 4.561 6 H 0.079 0.921 7 C -0.184 4.184 8 N -0.558 5.558 9 Si 0.782 3.218 10 H -0.188 1.188 11 H -0.210 1.210 12 H -0.208 1.208 13 N -0.307 5.307 14 C -0.054 4.054 15 C -0.068 4.068 16 C -0.191 4.191 17 C -0.054 4.054 18 O -0.106 6.106 19 C -0.025 4.025 20 C -0.133 4.133 21 C -0.110 4.110 22 C -0.155 4.155 23 C -0.110 4.110 24 C -0.150 4.150 25 H 0.051 0.949 26 H 0.056 0.944 27 H 0.074 0.926 28 H 0.035 0.965 29 H 0.075 0.925 30 H 0.069 0.931 31 H 0.150 0.850 32 H 0.074 0.926 33 H 0.016 0.984 34 H 0.089 0.911 35 H 0.113 0.887 36 H 0.256 0.744 37 H 0.171 0.829 38 H 0.187 0.813 39 H 0.170 0.830 40 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 3.646 5.034 18.267 19.296 hybrid contribution 0.614 0.660 -1.593 1.830 sum 4.260 5.694 16.675 18.128 Atomic orbital electron populations 1.21303 0.95608 0.98392 1.01059 1.21313 0.96585 0.97621 0.98292 1.18943 0.90431 0.92365 0.87087 1.02458 1.21498 1.31332 1.12008 0.91238 0.92147 1.25662 0.95221 0.95652 1.01861 1.70042 1.37781 1.24056 1.23946 0.85535 0.78024 0.78783 0.79472 1.18847 1.20980 1.20762 1.60657 1.48997 1.15645 1.05395 1.21814 0.92885 0.99388 0.91318 1.19806 0.97496 1.00017 0.89509 1.21270 0.96951 1.00940 0.99968 1.24403 0.91834 1.00473 0.88660 1.83980 1.29372 1.50057 1.47147 1.20097 0.94091 0.92522 0.95782 1.20352 0.91148 0.99394 1.02422 1.21366 1.00322 0.94635 0.94638 1.21161 0.95827 1.01509 0.96993 1.20553 0.95391 0.95412 0.99690 1.20194 0.96921 1.00588 0.97286 0.94904 0.94441 0.92624 0.96459 0.92549 0.93061 0.85020 0.92642 0.98421 0.91096 0.88682 0.74355 0.82905 0.81293 0.83026 0.85945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.67 9.52 71.98 0.69 -3.99 16 2 C -0.10 -4.92 5.59 30.60 0.17 -4.74 16 3 C 0.22 11.22 2.30 44.17 0.10 11.32 16 4 H -0.04 -2.45 7.71 -2.39 -0.02 -2.47 16 5 C -0.52 -28.17 7.26 25.60 0.19 -27.99 16 6 H 0.06 3.18 7.60 -2.91 -0.02 3.16 16 7 C 0.02 0.82 5.30 84.65 0.45 1.27 16 8 N -0.92 -53.16 11.32 21.45 0.24 -52.92 16 9 Si 0.96 43.31 29.54 68.60 2.03 45.33 16 10 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 11 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 12 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 13 N -0.68 -28.06 5.65 -495.44 -2.80 -30.86 16 14 C 0.08 2.75 5.52 86.30 0.48 3.23 16 15 C -0.03 -0.86 5.98 29.85 0.18 -0.69 16 16 C -0.19 -5.26 5.61 -18.59 -0.10 -5.36 16 17 C 0.01 0.25 11.89 66.85 0.79 1.04 16 18 O -0.20 -5.39 10.58 -8.93 -0.09 -5.48 16 19 C 0.02 0.59 7.42 22.99 0.17 0.76 16 20 C -0.11 -2.36 10.07 22.35 0.23 -2.14 16 21 C -0.09 -1.59 10.01 22.30 0.22 -1.37 16 22 C -0.14 -2.77 9.98 22.04 0.22 -2.55 16 23 C -0.09 -2.41 10.05 22.20 0.22 -2.19 16 24 C -0.15 -4.30 6.38 -20.21 -0.13 -4.43 16 25 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 26 H 0.04 1.77 7.07 -2.39 -0.02 1.75 16 27 H 0.05 2.26 7.74 -2.39 -0.02 2.24 16 28 H 0.02 0.79 7.61 -2.39 -0.02 0.77 16 29 H 0.06 3.14 6.06 -2.39 -0.01 3.12 16 30 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 31 H 0.33 13.40 8.14 -89.70 -0.73 12.67 16 32 H 0.06 2.08 7.61 -2.39 -0.02 2.06 16 33 H 0.00 -0.10 7.94 -2.39 -0.02 -0.12 16 34 H 0.07 1.96 8.14 -2.38 -0.02 1.94 16 35 H 0.09 2.39 8.14 -2.39 -0.02 2.38 16 36 H 0.24 3.71 8.06 -2.91 -0.02 3.69 16 37 H 0.15 2.29 8.06 -2.91 -0.02 2.27 16 38 H 0.17 1.62 8.06 -2.91 -0.02 1.59 16 39 H 0.15 2.22 8.06 -2.91 -0.02 2.19 16 40 H 0.12 3.15 8.06 -2.91 -0.02 3.13 16 Total: -1.00 -64.79 331.81 3.55 -61.25 By element: Atomic # 1 Polarization: 20.20 SS G_CDS: 0.30 Total: 20.50 kcal Atomic # 6 Polarization: -41.69 SS G_CDS: 3.87 Total: -37.82 kcal Atomic # 7 Polarization: -81.23 SS G_CDS: -2.56 Total: -83.78 kcal Atomic # 8 Polarization: -5.39 SS G_CDS: -0.09 Total: -5.48 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.33 kcal Total: -64.79 3.55 -61.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255155018.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.370 kcal (2) G-P(sol) polarization free energy of solvation -64.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds