Wall clock time and date at job start Mon Mar 30 2020 02:38:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47050 * 2 1 4 4 H 1.08993 * 109.47271 * 54.58942 * 3 2 1 5 5 C 1.50701 * 109.47193 * 174.58988 * 3 2 1 6 6 H 1.08002 * 119.99690 * 119.99549 * 5 3 2 7 7 C 1.37872 * 119.99741 * 300.27564 * 5 3 2 8 8 N 1.31510 * 120.00484 * 359.72414 * 7 5 3 9 9 Si 1.86804 * 119.99781 * 179.72413 * 7 5 3 10 10 H 1.48506 * 109.47151 * 59.99953 * 9 7 5 11 11 H 1.48498 * 109.47086 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47309 * 299.99779 * 9 7 5 13 13 N 1.46905 * 109.46763 * 294.58819 * 3 2 1 14 14 C 1.46901 * 110.99728 * 102.96850 * 13 3 2 15 15 H 1.09006 * 109.86324 * 326.88983 * 14 13 3 16 16 C 1.53448 * 109.87383 * 205.89292 * 14 13 3 17 17 C 1.52627 * 109.37355 * 176.50573 * 16 14 13 18 18 C 1.50426 * 111.26685 * 54.56423 * 17 16 14 19 19 C 1.38313 * 119.12406 * 157.54973 * 18 17 16 20 20 C 1.38248 * 120.36516 * 179.80344 * 19 18 17 21 21 C 1.38432 * 120.48599 * 359.97438 * 20 19 18 22 22 C 1.37892 * 119.95379 * 0.08854 * 21 20 19 23 23 C 1.39575 * 121.61643 * 337.49154 * 18 17 16 24 24 C 1.47592 * 120.11344 * 0.39149 * 23 18 17 25 25 O 1.21250 * 121.18808 * 168.66021 * 24 23 18 26 26 H 1.09006 * 109.46507 * 178.73155 * 1 2 3 27 27 H 1.08995 * 109.46941 * 298.72756 * 1 2 3 28 28 H 1.08994 * 109.47173 * 58.73268 * 1 2 3 29 29 H 1.09000 * 109.47183 * 239.99916 * 2 1 3 30 30 H 1.09001 * 109.47494 * 119.99729 * 2 1 3 31 31 H 0.97003 * 120.00353 * 180.02562 * 8 7 5 32 32 H 1.00904 * 110.99963 * 226.91521 * 13 3 2 33 33 H 1.08999 * 109.48932 * 296.47414 * 16 14 13 34 34 H 1.08995 * 109.49000 * 56.52245 * 16 14 13 35 35 H 1.08998 * 109.11774 * 175.02523 * 17 16 14 36 36 H 1.08996 * 109.12027 * 294.16817 * 17 16 14 37 37 H 1.08002 * 119.81825 * 359.79965 * 19 18 17 38 38 H 1.07995 * 119.75321 * 179.97438 * 20 19 18 39 39 H 1.08000 * 120.01967 * 180.10238 * 21 20 19 40 40 H 1.08002 * 120.11488 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5997 1.9835 0.8375 5 6 3.5410 1.4447 0.1340 6 1 4.1515 1.8873 -0.6392 7 6 4.1351 0.8764 1.2407 8 7 3.3918 0.3372 2.1822 9 14 5.9961 0.8722 1.4031 10 1 6.4959 2.2706 1.4059 11 1 6.3806 0.2071 2.6739 12 1 6.5912 0.1361 0.2589 13 7 1.6598 2.0962 -1.2595 14 6 0.5148 2.9949 -1.0614 15 1 -0.1434 2.5920 -0.2915 16 6 -0.2578 3.1533 -2.3777 17 6 -1.4926 4.0181 -2.1390 18 6 -1.1235 5.3357 -1.5143 19 6 -1.9857 6.4090 -1.6476 20 6 -1.6739 7.6306 -1.0803 21 6 -0.4962 7.7957 -0.3717 22 6 0.3760 6.7372 -0.2296 23 6 0.0662 5.5006 -0.8032 24 6 1.0034 4.3700 -0.6556 25 8 2.1244 4.5360 -0.2244 26 1 -0.3632 -1.0275 -0.0228 27 1 -0.3633 0.4939 0.9011 28 1 -0.3633 0.5334 -0.8784 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.8098 -0.0623 2.9610 32 1 2.4425 2.5908 -1.6608 33 1 0.3822 3.6303 -3.1199 34 1 -0.5652 2.1721 -2.7393 35 1 -1.9896 4.2014 -3.0917 36 1 -2.1765 3.4886 -1.4757 37 1 -2.9076 6.2921 -2.1979 38 1 -2.3541 8.4621 -1.1909 39 1 -0.2609 8.7529 0.0698 40 1 1.2957 6.8632 0.3224 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255164564.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:42 Heat of formation + Delta-G solvation = -21.872782 kcal Electronic energy + Delta-G solvation = -21265.565226 eV Core-core repulsion = 18237.454461 eV Total energy + Delta-G solvation = -3028.110765 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.35123 -38.13034 -36.25109 -34.76328 -32.21931 -31.24205 -30.81150 -29.35632 -27.42818 -25.48503 -23.22720 -22.79710 -21.96969 -21.35008 -19.45306 -18.85731 -16.88847 -16.66360 -15.83514 -15.46560 -14.83146 -14.51581 -14.34034 -14.12483 -13.89574 -13.60770 -13.35608 -12.95608 -12.61992 -12.41317 -12.18367 -11.94059 -11.68172 -11.51144 -11.21986 -11.16501 -10.90022 -10.83719 -10.68539 -10.64225 -10.12248 -9.63092 -9.52258 -9.27858 -8.96810 -8.77482 -8.73417 -8.34348 -7.30680 -5.93925 -3.99212 0.81178 1.30317 2.69393 3.37765 3.40818 3.44932 3.78819 4.33579 4.48124 4.62155 4.75541 4.90001 4.98100 5.09588 5.27724 5.31176 5.36313 5.46836 5.60246 5.71095 5.83907 5.89253 5.89401 6.03486 6.15480 6.35307 6.36865 6.37588 6.41163 6.44223 6.51607 6.62884 6.86495 7.04886 7.15540 7.44920 7.54551 7.85001 7.95807 8.02162 8.24975 8.38383 8.67479 9.08071 9.64893 11.11470 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.022946 B = 0.005367 C = 0.004644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.968229 B = 5215.954985 C = 6027.778025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.107 4.107 3 C 0.221 3.779 4 H 0.009 0.991 5 C -0.513 4.513 6 H 0.057 0.943 7 C 0.063 3.937 8 N -0.891 5.891 9 Si 0.894 3.106 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.277 1.277 13 N -0.667 5.667 14 C 0.051 3.949 15 H 0.107 0.893 16 C -0.102 4.102 17 C -0.088 4.088 18 C -0.031 4.031 19 C -0.138 4.138 20 C -0.096 4.096 21 C -0.140 4.140 22 C -0.065 4.065 23 C -0.159 4.159 24 C 0.357 3.643 25 O -0.424 6.424 26 H 0.029 0.971 27 H 0.034 0.966 28 H 0.045 0.955 29 H 0.037 0.963 30 H 0.091 0.909 31 H 0.260 0.740 32 H 0.338 0.662 33 H 0.064 0.936 34 H 0.086 0.914 35 H 0.080 0.920 36 H 0.085 0.915 37 H 0.125 0.875 38 H 0.122 0.878 39 H 0.125 0.875 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.666 10.566 -7.531 18.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.146 4.146 3 C 0.113 3.887 4 H 0.027 0.973 5 C -0.552 4.552 6 H 0.075 0.925 7 C -0.138 4.138 8 N -0.530 5.530 9 Si 0.722 3.278 10 H -0.204 1.204 11 H -0.214 1.214 12 H -0.203 1.203 13 N -0.297 5.297 14 C -0.061 4.061 15 H 0.124 0.876 16 C -0.140 4.140 17 C -0.125 4.125 18 C -0.032 4.032 19 C -0.156 4.156 20 C -0.114 4.114 21 C -0.158 4.158 22 C -0.084 4.084 23 C -0.161 4.161 24 C 0.230 3.770 25 O -0.296 6.296 26 H 0.048 0.952 27 H 0.053 0.947 28 H 0.064 0.936 29 H 0.056 0.944 30 H 0.109 0.891 31 H 0.070 0.930 32 H 0.157 0.843 33 H 0.083 0.917 34 H 0.104 0.896 35 H 0.099 0.901 36 H 0.103 0.897 37 H 0.143 0.857 38 H 0.140 0.860 39 H 0.143 0.857 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -12.400 9.989 -7.330 17.529 hybrid contribution 1.312 0.926 0.751 1.773 sum -11.087 10.915 -6.579 16.893 Atomic orbital electron populations 1.21840 0.99726 0.98924 0.99697 1.21570 0.91437 0.99577 1.02023 1.19123 0.94548 0.90776 0.84208 0.97277 1.21334 0.91364 1.37207 1.05309 0.92510 1.24868 0.98057 0.95249 0.95670 1.69866 1.34774 1.38879 1.09530 0.86634 0.85863 0.78161 0.77183 1.20388 1.21376 1.20270 1.60967 1.08582 1.29861 1.30263 1.22390 0.96547 0.89414 0.97798 0.87577 1.21525 0.95057 1.00467 0.97000 1.20544 0.98976 0.92211 1.00766 1.20160 0.92413 0.95688 0.94906 1.21076 0.99839 0.92836 1.01847 1.21272 0.96611 0.97262 0.96223 1.21119 0.95007 0.98987 1.00732 1.21476 0.98949 0.91595 0.96349 1.20696 0.96993 0.96131 1.02244 1.24132 0.86847 0.91745 0.74237 1.90605 1.20194 1.86725 1.32042 0.95193 0.94664 0.93624 0.94404 0.89116 0.93000 0.84335 0.91727 0.89560 0.90102 0.89713 0.85664 0.85957 0.85747 0.85096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.88 8.93 37.16 0.33 -2.55 16 2 C -0.11 -2.60 5.45 -26.73 -0.15 -2.74 16 3 C 0.22 5.59 1.78 -68.86 -0.12 5.47 16 4 H 0.01 0.27 7.48 -51.93 -0.39 -0.12 16 5 C -0.51 -14.47 8.60 -34.44 -0.30 -14.77 16 6 H 0.06 1.60 7.39 -52.49 -0.39 1.22 16 7 C 0.06 1.79 5.29 -17.82 -0.09 1.69 16 8 N -0.89 -25.94 11.28 55.43 0.63 -25.32 16 9 Si 0.89 22.10 29.54 -169.99 -5.02 17.08 16 10 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 13 N -0.67 -14.15 5.69 -101.52 -0.58 -14.73 16 14 C 0.05 0.90 1.65 -68.25 -0.11 0.79 16 15 H 0.11 1.94 6.47 -51.93 -0.34 1.60 16 16 C -0.10 -1.37 5.53 -26.69 -0.15 -1.52 16 17 C -0.09 -0.95 5.70 -28.21 -0.16 -1.11 16 18 C -0.03 -0.39 5.78 -104.23 -0.60 -1.00 16 19 C -0.14 -1.44 9.65 -39.55 -0.38 -1.82 16 20 C -0.10 -0.96 10.03 -39.51 -0.40 -1.35 16 21 C -0.14 -1.59 10.04 -39.64 -0.40 -1.99 16 22 C -0.07 -0.94 9.61 -39.13 -0.38 -1.32 16 23 C -0.16 -2.46 5.82 -105.00 -0.61 -3.07 16 24 C 0.36 6.70 6.61 -30.11 -0.20 6.50 16 25 O -0.42 -9.65 16.13 5.58 0.09 -9.56 16 26 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.04 0.83 6.70 -51.93 -0.35 0.48 16 29 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.09 2.46 5.93 -51.93 -0.31 2.15 16 31 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 32 H 0.34 7.52 7.20 -39.29 -0.28 7.24 16 33 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.08 0.68 8.11 -51.93 -0.42 0.26 16 36 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.13 0.97 8.06 -52.49 -0.42 0.54 16 38 H 0.12 0.88 8.06 -52.49 -0.42 0.45 16 39 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 40 H 0.13 1.94 7.72 -52.49 -0.41 1.54 16 LS Contribution 322.76 15.07 4.86 4.86 Total: -1.00 -30.99 322.76 -9.55 -40.54 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: -5.82 Total: 5.90 kcal Atomic # 6 Polarization: -15.06 SS G_CDS: -3.71 Total: -18.77 kcal Atomic # 7 Polarization: -40.09 SS G_CDS: 0.05 Total: -40.04 kcal Atomic # 8 Polarization: -9.65 SS G_CDS: 0.09 Total: -9.56 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -30.99 -9.55 -40.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255164564.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.666 kcal (2) G-P(sol) polarization free energy of solvation -30.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds