Wall clock time and date at job start Mon Mar 30 2020 02:38:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47050 * 2 1 4 4 H 1.08993 * 109.47271 * 54.58942 * 3 2 1 5 5 C 1.50701 * 109.47193 * 174.58988 * 3 2 1 6 6 H 1.08002 * 119.99690 * 119.99549 * 5 3 2 7 7 C 1.37872 * 119.99741 * 300.27564 * 5 3 2 8 8 N 1.31510 * 120.00484 * 359.72414 * 7 5 3 9 9 Si 1.86804 * 119.99781 * 179.72413 * 7 5 3 10 10 H 1.48506 * 109.47151 * 59.99953 * 9 7 5 11 11 H 1.48498 * 109.47086 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47309 * 299.99779 * 9 7 5 13 13 N 1.46905 * 109.46763 * 294.58819 * 3 2 1 14 14 C 1.46901 * 110.99728 * 102.96850 * 13 3 2 15 15 H 1.09006 * 109.86324 * 326.88983 * 14 13 3 16 16 C 1.53448 * 109.87383 * 205.89292 * 14 13 3 17 17 C 1.52627 * 109.37355 * 176.50573 * 16 14 13 18 18 C 1.50426 * 111.26685 * 54.56423 * 17 16 14 19 19 C 1.38313 * 119.12406 * 157.54973 * 18 17 16 20 20 C 1.38248 * 120.36516 * 179.80344 * 19 18 17 21 21 C 1.38432 * 120.48599 * 359.97438 * 20 19 18 22 22 C 1.37892 * 119.95379 * 0.08854 * 21 20 19 23 23 C 1.39575 * 121.61643 * 337.49154 * 18 17 16 24 24 C 1.47592 * 120.11344 * 0.39149 * 23 18 17 25 25 O 1.21250 * 121.18808 * 168.66021 * 24 23 18 26 26 H 1.09006 * 109.46507 * 178.73155 * 1 2 3 27 27 H 1.08995 * 109.46941 * 298.72756 * 1 2 3 28 28 H 1.08994 * 109.47173 * 58.73268 * 1 2 3 29 29 H 1.09000 * 109.47183 * 239.99916 * 2 1 3 30 30 H 1.09001 * 109.47494 * 119.99729 * 2 1 3 31 31 H 0.97003 * 120.00353 * 180.02562 * 8 7 5 32 32 H 1.00904 * 110.99963 * 226.91521 * 13 3 2 33 33 H 1.08999 * 109.48932 * 296.47414 * 16 14 13 34 34 H 1.08995 * 109.49000 * 56.52245 * 16 14 13 35 35 H 1.08998 * 109.11774 * 175.02523 * 17 16 14 36 36 H 1.08996 * 109.12027 * 294.16817 * 17 16 14 37 37 H 1.08002 * 119.81825 * 359.79965 * 19 18 17 38 38 H 1.07995 * 119.75321 * 179.97438 * 20 19 18 39 39 H 1.08000 * 120.01967 * 180.10238 * 21 20 19 40 40 H 1.08002 * 120.11488 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5997 1.9835 0.8375 5 6 3.5410 1.4447 0.1340 6 1 4.1515 1.8873 -0.6392 7 6 4.1351 0.8764 1.2407 8 7 3.3918 0.3372 2.1822 9 14 5.9961 0.8722 1.4031 10 1 6.4959 2.2706 1.4059 11 1 6.3806 0.2071 2.6739 12 1 6.5912 0.1361 0.2589 13 7 1.6598 2.0962 -1.2595 14 6 0.5148 2.9949 -1.0614 15 1 -0.1434 2.5920 -0.2915 16 6 -0.2578 3.1533 -2.3777 17 6 -1.4926 4.0181 -2.1390 18 6 -1.1235 5.3357 -1.5143 19 6 -1.9857 6.4090 -1.6476 20 6 -1.6739 7.6306 -1.0803 21 6 -0.4962 7.7957 -0.3717 22 6 0.3760 6.7372 -0.2296 23 6 0.0662 5.5006 -0.8032 24 6 1.0034 4.3700 -0.6556 25 8 2.1244 4.5360 -0.2244 26 1 -0.3632 -1.0275 -0.0228 27 1 -0.3633 0.4939 0.9011 28 1 -0.3633 0.5334 -0.8784 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.8098 -0.0623 2.9610 32 1 2.4425 2.5908 -1.6608 33 1 0.3822 3.6303 -3.1199 34 1 -0.5652 2.1721 -2.7393 35 1 -1.9896 4.2014 -3.0917 36 1 -2.1765 3.4886 -1.4757 37 1 -2.9076 6.2921 -2.1979 38 1 -2.3541 8.4621 -1.1909 39 1 -0.2609 8.7529 0.0698 40 1 1.2957 6.8632 0.3224 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255164564.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:41 Heat of formation + Delta-G solvation = -40.950806 kcal Electronic energy + Delta-G solvation = -21266.392511 eV Core-core repulsion = 18237.454461 eV Total energy + Delta-G solvation = -3028.938050 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.58013 -39.36643 -37.91485 -36.15675 -34.09645 -32.60237 -32.13915 -30.59972 -28.95032 -27.18120 -24.77393 -24.09894 -23.26303 -22.39779 -21.34706 -20.18636 -18.64782 -17.92131 -17.26963 -16.91116 -16.44792 -15.87834 -15.58779 -15.45761 -15.36081 -15.04463 -14.46402 -14.36596 -14.20572 -14.01306 -13.44999 -13.22914 -13.19061 -12.99246 -12.86260 -12.73103 -12.59255 -12.25828 -12.13012 -12.01868 -11.83033 -11.53536 -11.26677 -10.97745 -10.70879 -10.47378 -9.94272 -9.65059 -9.07889 -8.12412 -6.25322 -0.27880 0.39623 1.35454 1.38147 1.43446 1.45341 2.39231 2.80360 3.04700 3.14223 3.48420 3.72918 3.89382 3.94216 4.12849 4.25658 4.34709 4.40187 4.46197 4.61458 4.61887 4.70348 4.73928 4.84976 4.90413 5.01757 5.07828 5.10802 5.18106 5.27666 5.39587 5.47121 5.49359 5.50426 5.53076 5.66409 5.67456 5.95068 5.99525 6.26803 6.35657 6.52909 6.72352 6.95528 7.42153 8.91134 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.022946 B = 0.005367 C = 0.004644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.968229 B = 5215.954985 C = 6027.778025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.102 4.102 3 C 0.231 3.769 4 H -0.033 1.033 5 C -0.536 4.536 6 H 0.046 0.954 7 C 0.015 3.985 8 N -0.915 5.915 9 Si 0.954 3.046 10 H -0.282 1.282 11 H -0.279 1.279 12 H -0.267 1.267 13 N -0.659 5.659 14 C 0.045 3.955 15 H 0.100 0.900 16 C -0.092 4.092 17 C -0.083 4.083 18 C -0.032 4.032 19 C -0.131 4.131 20 C -0.081 4.081 21 C -0.142 4.142 22 C -0.090 4.090 23 C -0.194 4.194 24 C 0.354 3.646 25 O -0.487 6.487 26 H 0.051 0.949 27 H 0.028 0.972 28 H 0.066 0.934 29 H 0.033 0.967 30 H 0.058 0.942 31 H 0.261 0.739 32 H 0.328 0.672 33 H 0.062 0.938 34 H 0.099 0.901 35 H 0.120 0.880 36 H 0.100 0.900 37 H 0.167 0.833 38 H 0.163 0.837 39 H 0.147 0.853 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.719 11.742 -9.435 21.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.141 4.141 3 C 0.123 3.877 4 H -0.015 1.015 5 C -0.574 4.574 6 H 0.064 0.936 7 C -0.184 4.184 8 N -0.554 5.554 9 Si 0.780 3.220 10 H -0.208 1.208 11 H -0.204 1.204 12 H -0.191 1.191 13 N -0.287 5.287 14 C -0.067 4.067 15 H 0.118 0.882 16 C -0.130 4.130 17 C -0.120 4.120 18 C -0.032 4.032 19 C -0.149 4.149 20 C -0.099 4.099 21 C -0.159 4.159 22 C -0.109 4.109 23 C -0.195 4.195 24 C 0.232 3.768 25 O -0.363 6.363 26 H 0.070 0.930 27 H 0.047 0.953 28 H 0.084 0.916 29 H 0.051 0.949 30 H 0.077 0.923 31 H 0.070 0.930 32 H 0.145 0.855 33 H 0.081 0.919 34 H 0.117 0.883 35 H 0.138 0.862 36 H 0.118 0.882 37 H 0.184 0.816 38 H 0.181 0.819 39 H 0.165 0.835 40 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -15.492 11.164 -9.253 21.219 hybrid contribution 2.175 0.676 1.335 2.641 sum -13.316 11.840 -7.918 19.499 Atomic orbital electron populations 1.21695 0.96211 1.00646 1.00370 1.21392 0.94610 0.98012 1.00105 1.18853 0.92886 0.91425 0.84530 1.01494 1.21686 0.93171 1.37193 1.05383 0.93563 1.25634 1.02429 0.94967 0.95409 1.69996 1.36336 1.39287 1.09808 0.85680 0.80731 0.77884 0.77729 1.20830 1.20371 1.19148 1.60961 1.09045 1.30904 1.27806 1.22592 0.95318 0.88326 1.00441 0.88189 1.21493 0.95686 1.02000 0.93852 1.20625 0.97649 0.90735 1.02947 1.20429 0.91328 0.97460 0.93989 1.21537 1.00431 0.91814 1.01071 1.21794 0.95903 0.98443 0.93749 1.21409 0.95016 0.98795 1.00730 1.21478 0.99280 0.92748 0.97347 1.20513 0.98204 0.95253 1.05574 1.24608 0.86499 0.93483 0.72248 1.90568 1.22783 1.87689 1.35290 0.92956 0.95253 0.91554 0.94854 0.92321 0.92950 0.85451 0.91939 0.88270 0.86157 0.88210 0.81595 0.81909 0.83497 0.87586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.19 8.93 71.98 0.64 -4.55 16 2 C -0.10 -5.10 5.45 30.60 0.17 -4.93 16 3 C 0.23 12.36 1.78 44.17 0.08 12.44 16 4 H -0.03 -1.98 7.48 -2.39 -0.02 -2.00 16 5 C -0.54 -31.80 8.60 25.60 0.22 -31.58 16 6 H 0.05 2.76 7.39 -2.91 -0.02 2.74 16 7 C 0.01 0.86 5.29 84.65 0.45 1.31 16 8 N -0.91 -55.38 11.28 21.44 0.24 -55.14 16 9 Si 0.95 46.84 29.54 68.60 2.03 48.86 16 10 H -0.28 -13.96 7.11 99.48 0.71 -13.26 16 11 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 12 H -0.27 -12.55 7.11 99.48 0.71 -11.85 16 13 N -0.66 -29.17 5.69 -475.09 -2.70 -31.87 16 14 C 0.05 1.63 1.65 44.57 0.07 1.71 16 15 H 0.10 3.75 6.47 -2.38 -0.02 3.73 16 16 C -0.09 -2.30 5.53 30.62 0.17 -2.13 16 17 C -0.08 -1.46 5.70 29.64 0.17 -1.30 16 18 C -0.03 -0.71 5.78 -19.61 -0.11 -0.82 16 19 C -0.13 -2.06 9.65 22.29 0.22 -1.85 16 20 C -0.08 -1.25 10.03 22.32 0.22 -1.02 16 21 C -0.14 -2.93 10.04 22.23 0.22 -2.71 16 22 C -0.09 -2.67 9.61 22.56 0.22 -2.45 16 23 C -0.19 -6.07 5.82 -20.11 -0.12 -6.19 16 24 C 0.35 14.13 6.61 28.40 0.19 14.32 16 25 O -0.49 -24.34 16.13 -2.94 -0.05 -24.38 16 26 H 0.05 1.81 8.14 -2.38 -0.02 1.79 16 27 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.07 2.31 6.70 -2.39 -0.02 2.29 16 29 H 0.03 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.06 3.31 5.93 -2.39 -0.01 3.29 16 31 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 32 H 0.33 15.55 7.20 -89.69 -0.65 14.90 16 33 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 35 H 0.12 1.29 8.11 -2.39 -0.02 1.27 16 36 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.17 1.34 8.06 -2.91 -0.02 1.31 16 38 H 0.16 1.26 8.06 -2.91 -0.02 1.23 16 39 H 0.15 2.28 8.06 -2.91 -0.02 2.25 16 40 H 0.11 3.53 7.72 -2.91 -0.02 3.50 16 Total: -1.00 -73.88 322.76 2.71 -71.17 By element: Atomic # 1 Polarization: 20.75 SS G_CDS: 0.39 Total: 21.14 kcal Atomic # 6 Polarization: -32.58 SS G_CDS: 2.80 Total: -29.77 kcal Atomic # 7 Polarization: -84.55 SS G_CDS: -2.46 Total: -87.01 kcal Atomic # 8 Polarization: -24.34 SS G_CDS: -0.05 Total: -24.38 kcal Atomic # 14 Polarization: 46.84 SS G_CDS: 2.03 Total: 48.86 kcal Total: -73.88 2.71 -71.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255164564.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.216 kcal (2) G-P(sol) polarization free energy of solvation -73.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds