Wall clock time and date at job start Mon Mar 30 2020 02:38:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46744 * 2 1 4 4 H 1.09004 * 109.47607 * 54.13959 * 3 2 1 5 5 C 1.50700 * 109.47055 * 174.14463 * 3 2 1 6 6 H 1.08001 * 120.00460 * 114.68433 * 5 3 2 7 7 C 1.37880 * 119.99917 * 294.68264 * 5 3 2 8 8 N 1.31511 * 120.00430 * 167.50898 * 7 5 3 9 9 Si 1.86811 * 119.99724 * 347.50875 * 7 5 3 10 10 H 1.48494 * 109.46823 * 264.81058 * 9 7 5 11 11 H 1.48497 * 109.47102 * 24.81123 * 9 7 5 12 12 H 1.48497 * 109.46893 * 144.81056 * 9 7 5 13 13 N 1.46902 * 109.47125 * 294.13930 * 3 2 1 14 14 C 1.46903 * 111.00193 * 155.15464 * 13 3 2 15 15 H 1.09006 * 109.86010 * 31.56701 * 14 13 3 16 16 C 1.53435 * 109.87507 * 152.63439 * 14 13 3 17 17 C 1.52639 * 109.36998 * 183.44770 * 16 14 13 18 18 C 1.50414 * 111.25326 * 305.36253 * 17 16 14 19 19 C 1.38310 * 119.12598 * 202.42800 * 18 17 16 20 20 C 1.38248 * 120.36173 * 180.49796 * 19 18 17 21 21 C 1.38424 * 120.48941 * 0.03232 * 20 19 18 22 22 C 1.37904 * 119.95288 * 359.85243 * 21 20 19 23 23 C 1.39578 * 121.61150 * 22.73841 * 18 17 16 24 24 C 1.47583 * 120.10536 * 359.35406 * 23 18 17 25 25 O 1.21256 * 121.17711 * 191.50092 * 24 23 18 26 26 H 1.09005 * 109.47628 * 304.53192 * 1 2 3 27 27 H 1.08994 * 109.47504 * 64.53460 * 1 2 3 28 28 H 1.09000 * 109.47362 * 184.53556 * 1 2 3 29 29 H 1.08992 * 109.47210 * 240.00016 * 2 1 3 30 30 H 1.08996 * 109.47169 * 119.99732 * 2 1 3 31 31 H 0.96994 * 120.00468 * 180.02562 * 8 7 5 32 32 H 1.00903 * 110.99899 * 31.20658 * 13 3 2 33 33 H 1.08997 * 109.48837 * 303.41391 * 16 14 13 34 34 H 1.08995 * 109.48471 * 63.47191 * 16 14 13 35 35 H 1.09002 * 109.11867 * 184.90552 * 17 16 14 36 36 H 1.09011 * 109.08364 * 65.78887 * 17 16 14 37 37 H 1.08003 * 119.81886 * 0.50817 * 19 18 17 38 38 H 1.08000 * 119.75861 * 180.02562 * 20 19 18 39 39 H 1.07997 * 120.02671 * 179.84169 * 21 20 19 40 40 H 1.08002 * 120.11732 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5934 1.9858 0.8329 5 6 3.5399 1.4451 0.1449 6 1 4.1598 1.8075 -0.6618 7 6 4.1209 0.9848 1.3075 8 7 5.4151 0.7546 1.3496 9 14 3.0698 0.6882 2.8231 10 1 3.1146 1.8867 3.6987 11 1 1.6672 0.4293 2.4098 12 1 3.5921 -0.4871 3.5654 13 7 1.6691 2.0930 -1.2639 14 6 1.5914 3.5511 -1.1027 15 1 2.3091 3.8793 -0.3508 16 6 1.8845 4.2403 -2.4418 17 6 1.8854 5.7537 -2.2427 18 6 0.6020 6.2216 -1.6131 19 6 0.2138 7.5391 -1.7753 20 6 -0.9557 7.9990 -1.1991 21 6 -1.7526 7.1483 -0.4524 22 6 -1.3825 5.8308 -0.2820 23 6 -0.2021 5.3605 -0.8646 24 6 0.1906 3.9492 -0.6858 25 8 -0.5810 3.1369 -0.2220 26 1 -0.3634 0.5826 0.8466 27 1 -0.3634 0.4418 -0.9277 28 1 -0.3634 -1.0244 0.0813 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 5.8237 0.4304 2.1673 32 1 0.8011 1.7219 -1.6205 33 1 2.8599 3.9213 -2.8091 34 1 1.1165 3.9692 -3.1660 35 1 2.0070 6.2409 -3.2101 36 1 2.7203 6.0278 -1.5976 37 1 0.8275 8.2123 -2.3555 38 1 -1.2498 9.0296 -1.3324 39 1 -2.6634 7.5161 -0.0035 40 1 -2.0025 5.1647 0.2997 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255164565.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:45 Heat of formation + Delta-G solvation = -16.874328 kcal Electronic energy + Delta-G solvation = -21340.941088 eV Core-core repulsion = 18313.047072 eV Total energy + Delta-G solvation = -3027.894016 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.45073 -38.28356 -36.40109 -34.99265 -32.21272 -31.59742 -31.13663 -29.27193 -27.49071 -26.08801 -23.24748 -22.74338 -21.97572 -21.41724 -19.73591 -18.83364 -17.02031 -16.65389 -16.21233 -15.66265 -14.90622 -14.65458 -14.47375 -14.32287 -13.98602 -13.81198 -13.41830 -12.97799 -12.89839 -12.56324 -12.26509 -12.09509 -11.92297 -11.76741 -11.57471 -11.13361 -11.06531 -10.84391 -10.76127 -10.42174 -10.23969 -9.89791 -9.55147 -9.38099 -9.07800 -9.02788 -8.77801 -8.47335 -7.40596 -6.04364 -3.98223 0.71505 1.25382 2.54459 3.29888 3.40196 3.45991 3.71865 4.22514 4.46078 4.60289 4.70643 4.83758 4.87417 5.07595 5.24295 5.25967 5.27016 5.38505 5.56712 5.66344 5.80000 5.88362 5.89282 6.00405 6.00884 6.05462 6.19756 6.21433 6.31459 6.37971 6.42088 6.49027 6.70726 6.78605 6.80131 6.85781 7.03678 7.26914 7.71770 7.81153 7.93885 8.22258 8.75245 9.09921 9.62147 11.08682 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.022225 B = 0.005579 C = 0.005293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.550230 B = 5017.598097 C = 5288.245378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.126 4.126 3 C 0.194 3.806 4 H 0.000 1.000 5 C -0.502 4.502 6 H 0.081 0.919 7 C 0.073 3.927 8 N -0.896 5.896 9 Si 0.854 3.146 10 H -0.283 1.283 11 H -0.250 1.250 12 H -0.287 1.287 13 N -0.653 5.653 14 C 0.055 3.945 15 H 0.120 0.880 16 C -0.099 4.099 17 C -0.090 4.090 18 C -0.026 4.026 19 C -0.138 4.138 20 C -0.092 4.092 21 C -0.142 4.142 22 C -0.064 4.064 23 C -0.163 4.163 24 C 0.366 3.634 25 O -0.448 6.448 26 H 0.047 0.953 27 H 0.046 0.954 28 H 0.038 0.962 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.262 0.738 32 H 0.326 0.674 33 H 0.091 0.909 34 H 0.061 0.939 35 H 0.082 0.918 36 H 0.089 0.911 37 H 0.127 0.873 38 H 0.123 0.877 39 H 0.125 0.875 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.702 13.125 -6.428 18.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.165 4.165 3 C 0.086 3.914 4 H 0.017 0.983 5 C -0.541 4.541 6 H 0.099 0.901 7 C -0.129 4.129 8 N -0.534 5.534 9 Si 0.681 3.319 10 H -0.210 1.210 11 H -0.174 1.174 12 H -0.213 1.213 13 N -0.283 5.283 14 C -0.057 4.057 15 H 0.138 0.862 16 C -0.137 4.137 17 C -0.127 4.127 18 C -0.026 4.026 19 C -0.156 4.156 20 C -0.110 4.110 21 C -0.160 4.160 22 C -0.083 4.083 23 C -0.165 4.165 24 C 0.242 3.758 25 O -0.322 6.322 26 H 0.066 0.934 27 H 0.065 0.935 28 H 0.057 0.943 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.145 0.855 33 H 0.110 0.890 34 H 0.080 0.920 35 H 0.100 0.900 36 H 0.108 0.892 37 H 0.145 0.855 38 H 0.141 0.859 39 H 0.143 0.857 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -11.294 12.587 -6.308 18.049 hybrid contribution -1.343 0.076 1.574 2.070 sum -12.637 12.663 -4.734 18.506 Atomic orbital electron populations 1.21850 0.98076 0.99699 1.01074 1.22073 0.92881 0.99756 1.01769 1.19582 0.96365 0.89876 0.85602 0.98280 1.21022 0.89124 1.41976 1.01946 0.90129 1.24885 0.94650 0.94846 0.98473 1.69942 1.10539 1.45368 1.27541 0.87348 0.82631 0.77927 0.84008 1.20983 1.17403 1.21298 1.60718 1.36166 1.00053 1.31363 1.22276 0.93048 0.91740 0.98659 0.86208 1.21488 1.03833 0.92069 0.96356 1.20584 0.94216 0.96978 1.00956 1.20214 0.95037 0.92954 0.94388 1.21107 0.97518 0.95187 1.01759 1.21295 0.94334 0.99569 0.95841 1.21110 1.00534 0.93738 1.00658 1.21434 0.94630 0.95666 0.96538 1.20582 0.96937 0.96477 1.02491 1.24253 0.91289 0.86907 0.73397 1.90496 1.54516 1.53810 1.33411 0.93400 0.93477 0.94290 0.92020 0.92247 0.92819 0.85480 0.89000 0.91990 0.89966 0.89246 0.85499 0.85877 0.85745 0.85237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.91 9.56 37.16 0.36 -2.56 16 2 C -0.13 -2.84 4.73 -26.73 -0.13 -2.97 16 3 C 0.19 4.62 1.19 -68.86 -0.08 4.54 16 4 H 0.00 -0.01 6.31 -51.93 -0.33 -0.34 16 5 C -0.50 -13.96 8.97 -34.44 -0.31 -14.26 16 6 H 0.08 2.44 8.06 -52.49 -0.42 2.02 16 7 C 0.07 2.10 5.36 -17.82 -0.10 2.00 16 8 N -0.90 -27.24 13.96 55.43 0.77 -26.47 16 9 Si 0.85 21.54 25.73 -169.99 -4.37 17.16 16 10 H -0.28 -7.17 7.11 56.52 0.40 -6.76 16 11 H -0.25 -6.06 5.37 56.52 0.30 -5.76 16 12 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 13 N -0.65 -13.40 5.94 -101.52 -0.60 -14.00 16 14 C 0.05 0.98 2.49 -68.26 -0.17 0.81 16 15 H 0.12 2.35 7.63 -51.93 -0.40 1.96 16 16 C -0.10 -1.38 5.53 -26.69 -0.15 -1.53 16 17 C -0.09 -1.02 5.70 -28.21 -0.16 -1.18 16 18 C -0.03 -0.32 5.78 -104.23 -0.60 -0.92 16 19 C -0.14 -1.41 9.65 -39.55 -0.38 -1.79 16 20 C -0.09 -0.89 10.03 -39.51 -0.40 -1.28 16 21 C -0.14 -1.52 10.04 -39.64 -0.40 -1.92 16 22 C -0.06 -0.86 9.61 -39.13 -0.38 -1.23 16 23 C -0.16 -2.39 5.82 -105.01 -0.61 -3.00 16 24 C 0.37 6.36 6.55 -30.12 -0.20 6.17 16 25 O -0.45 -8.82 15.90 5.58 0.09 -8.73 16 26 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.05 0.86 6.62 -51.93 -0.34 0.52 16 28 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 30 H 0.06 1.41 4.84 -51.93 -0.25 1.15 16 31 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 32 H 0.33 6.37 5.85 -39.29 -0.23 6.14 16 33 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 34 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.08 0.73 8.11 -51.93 -0.42 0.31 16 36 H 0.09 0.99 8.14 -51.92 -0.42 0.57 16 37 H 0.13 0.98 8.06 -52.48 -0.42 0.55 16 38 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 39 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 40 H 0.13 1.73 7.72 -52.49 -0.41 1.32 16 LS Contribution 318.58 15.07 4.80 4.80 Total: -1.00 -31.42 318.58 -8.85 -40.27 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: -5.84 Total: 6.10 kcal Atomic # 6 Polarization: -15.42 SS G_CDS: -3.70 Total: -19.12 kcal Atomic # 7 Polarization: -40.64 SS G_CDS: 0.17 Total: -40.47 kcal Atomic # 8 Polarization: -8.82 SS G_CDS: 0.09 Total: -8.73 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.37 Total: 17.16 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -31.42 -8.85 -40.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255164565.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.393 kcal (2) G-P(sol) polarization free energy of solvation -31.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds