Wall clock time and date at job start Mon Mar 30 2020 02:38:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46744 * 2 1 4 4 H 1.09004 * 109.47607 * 54.13959 * 3 2 1 5 5 C 1.50700 * 109.47055 * 174.14463 * 3 2 1 6 6 H 1.08001 * 120.00460 * 114.68433 * 5 3 2 7 7 C 1.37880 * 119.99917 * 294.68264 * 5 3 2 8 8 N 1.31511 * 120.00430 * 167.50898 * 7 5 3 9 9 Si 1.86811 * 119.99724 * 347.50875 * 7 5 3 10 10 H 1.48494 * 109.46823 * 264.81058 * 9 7 5 11 11 H 1.48497 * 109.47102 * 24.81123 * 9 7 5 12 12 H 1.48497 * 109.46893 * 144.81056 * 9 7 5 13 13 N 1.46902 * 109.47125 * 294.13930 * 3 2 1 14 14 C 1.46903 * 111.00193 * 155.15464 * 13 3 2 15 15 H 1.09006 * 109.86010 * 31.56701 * 14 13 3 16 16 C 1.53435 * 109.87507 * 152.63439 * 14 13 3 17 17 C 1.52639 * 109.36998 * 183.44770 * 16 14 13 18 18 C 1.50414 * 111.25326 * 305.36253 * 17 16 14 19 19 C 1.38310 * 119.12598 * 202.42800 * 18 17 16 20 20 C 1.38248 * 120.36173 * 180.49796 * 19 18 17 21 21 C 1.38424 * 120.48941 * 0.03232 * 20 19 18 22 22 C 1.37904 * 119.95288 * 359.85243 * 21 20 19 23 23 C 1.39578 * 121.61150 * 22.73841 * 18 17 16 24 24 C 1.47583 * 120.10536 * 359.35406 * 23 18 17 25 25 O 1.21256 * 121.17711 * 191.50092 * 24 23 18 26 26 H 1.09005 * 109.47628 * 304.53192 * 1 2 3 27 27 H 1.08994 * 109.47504 * 64.53460 * 1 2 3 28 28 H 1.09000 * 109.47362 * 184.53556 * 1 2 3 29 29 H 1.08992 * 109.47210 * 240.00016 * 2 1 3 30 30 H 1.08996 * 109.47169 * 119.99732 * 2 1 3 31 31 H 0.96994 * 120.00468 * 180.02562 * 8 7 5 32 32 H 1.00903 * 110.99899 * 31.20658 * 13 3 2 33 33 H 1.08997 * 109.48837 * 303.41391 * 16 14 13 34 34 H 1.08995 * 109.48471 * 63.47191 * 16 14 13 35 35 H 1.09002 * 109.11867 * 184.90552 * 17 16 14 36 36 H 1.09011 * 109.08364 * 65.78887 * 17 16 14 37 37 H 1.08003 * 119.81886 * 0.50817 * 19 18 17 38 38 H 1.08000 * 119.75861 * 180.02562 * 20 19 18 39 39 H 1.07997 * 120.02671 * 179.84169 * 21 20 19 40 40 H 1.08002 * 120.11732 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5934 1.9858 0.8329 5 6 3.5399 1.4451 0.1449 6 1 4.1598 1.8075 -0.6618 7 6 4.1209 0.9848 1.3075 8 7 5.4151 0.7546 1.3496 9 14 3.0698 0.6882 2.8231 10 1 3.1146 1.8867 3.6987 11 1 1.6672 0.4293 2.4098 12 1 3.5921 -0.4871 3.5654 13 7 1.6691 2.0930 -1.2639 14 6 1.5914 3.5511 -1.1027 15 1 2.3091 3.8793 -0.3508 16 6 1.8845 4.2403 -2.4418 17 6 1.8854 5.7537 -2.2427 18 6 0.6020 6.2216 -1.6131 19 6 0.2138 7.5391 -1.7753 20 6 -0.9557 7.9990 -1.1991 21 6 -1.7526 7.1483 -0.4524 22 6 -1.3825 5.8308 -0.2820 23 6 -0.2021 5.3605 -0.8646 24 6 0.1906 3.9492 -0.6858 25 8 -0.5810 3.1369 -0.2220 26 1 -0.3634 0.5826 0.8466 27 1 -0.3634 0.4418 -0.9277 28 1 -0.3634 -1.0244 0.0813 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 5.8237 0.4304 2.1673 32 1 0.8011 1.7219 -1.6205 33 1 2.8599 3.9213 -2.8091 34 1 1.1165 3.9692 -3.1660 35 1 2.0070 6.2409 -3.2101 36 1 2.7203 6.0278 -1.5976 37 1 0.8275 8.2123 -2.3555 38 1 -1.2498 9.0296 -1.3324 39 1 -2.6634 7.5161 -0.0035 40 1 -2.0025 5.1647 0.2997 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255164565.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:44 Heat of formation + Delta-G solvation = -36.801518 kcal Electronic energy + Delta-G solvation = -21341.805196 eV Core-core repulsion = 18313.047072 eV Total energy + Delta-G solvation = -3028.758124 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.62220 -39.43072 -38.02112 -36.28159 -34.27083 -33.01686 -32.15237 -30.45096 -29.17871 -27.58724 -24.58129 -24.11298 -23.30229 -22.42871 -21.61344 -20.03442 -18.92816 -17.89612 -17.56874 -17.08397 -16.34397 -15.97435 -15.76098 -15.55657 -15.48230 -15.10193 -14.82605 -14.36235 -14.25947 -14.13380 -13.83116 -13.54573 -13.21543 -13.03574 -12.87887 -12.71026 -12.43637 -12.23982 -12.20239 -12.06351 -11.85896 -11.62174 -11.33653 -11.25845 -10.73587 -10.66285 -9.94865 -9.65969 -9.10218 -8.29783 -6.26895 -0.31450 0.39644 1.25794 1.31810 1.37604 1.42368 2.31700 2.79230 2.97142 3.05588 3.35005 3.69529 3.85609 3.92816 4.13300 4.23554 4.29369 4.33144 4.36544 4.40374 4.46645 4.47595 4.62048 4.68365 4.82429 4.90069 5.00650 5.05148 5.09070 5.10797 5.19112 5.22486 5.32246 5.42965 5.46414 5.48956 5.50859 5.74726 5.97516 6.02324 6.32731 6.50969 6.76720 6.82575 7.36848 8.86870 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.022225 B = 0.005579 C = 0.005293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.550230 B = 5017.598097 C = 5288.245378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 C 0.203 3.797 4 H -0.017 1.017 5 C -0.500 4.500 6 H 0.043 0.957 7 C 0.023 3.977 8 N -0.940 5.940 9 Si 0.912 3.088 10 H -0.283 1.283 11 H -0.237 1.237 12 H -0.281 1.281 13 N -0.658 5.658 14 C 0.048 3.952 15 H 0.094 0.906 16 C -0.091 4.091 17 C -0.085 4.085 18 C -0.032 4.032 19 C -0.134 4.134 20 C -0.080 4.080 21 C -0.141 4.141 22 C -0.082 4.082 23 C -0.194 4.194 24 C 0.367 3.633 25 O -0.482 6.482 26 H 0.035 0.965 27 H 0.055 0.945 28 H 0.065 0.935 29 H 0.061 0.939 30 H 0.046 0.954 31 H 0.265 0.735 32 H 0.333 0.667 33 H 0.084 0.916 34 H 0.070 0.930 35 H 0.117 0.883 36 H 0.090 0.910 37 H 0.161 0.839 38 H 0.162 0.838 39 H 0.150 0.850 40 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.685 15.527 -7.206 21.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.165 4.165 3 C 0.094 3.906 4 H 0.001 0.999 5 C -0.539 4.539 6 H 0.061 0.939 7 C -0.174 4.174 8 N -0.580 5.580 9 Si 0.737 3.263 10 H -0.209 1.209 11 H -0.160 1.160 12 H -0.207 1.207 13 N -0.289 5.289 14 C -0.064 4.064 15 H 0.111 0.889 16 C -0.129 4.129 17 C -0.122 4.122 18 C -0.032 4.032 19 C -0.152 4.152 20 C -0.098 4.098 21 C -0.159 4.159 22 C -0.100 4.100 23 C -0.195 4.195 24 C 0.245 3.755 25 O -0.359 6.359 26 H 0.054 0.946 27 H 0.074 0.926 28 H 0.084 0.916 29 H 0.079 0.921 30 H 0.065 0.935 31 H 0.074 0.926 32 H 0.152 0.848 33 H 0.102 0.898 34 H 0.088 0.912 35 H 0.136 0.864 36 H 0.108 0.892 37 H 0.178 0.822 38 H 0.179 0.821 39 H 0.168 0.832 40 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -13.290 15.009 -7.106 21.269 hybrid contribution -0.705 -0.542 1.724 1.940 sum -13.995 14.466 -5.381 20.835 Atomic orbital electron populations 1.21721 0.95418 1.01286 1.01060 1.21988 0.95208 0.98210 1.01116 1.19327 0.93603 0.91113 0.86607 0.99937 1.21208 0.91070 1.40810 1.00762 0.93864 1.25571 0.95642 0.94950 1.01275 1.70059 1.12312 1.47138 1.28489 0.86405 0.81726 0.77841 0.80335 1.20923 1.15995 1.20656 1.60625 1.36724 1.01855 1.29650 1.22366 0.93375 0.90284 1.00378 0.88871 1.21434 1.03522 0.93978 0.93989 1.20597 0.93999 0.94746 1.02819 1.20370 0.94898 0.93852 0.94098 1.21499 0.97961 0.94352 1.01340 1.21788 0.93269 1.01052 0.93677 1.21439 1.01573 0.92515 1.00389 1.21492 0.94387 0.97082 0.97082 1.20423 0.98793 0.95023 1.05288 1.24323 0.90415 0.88400 0.72317 1.90462 1.55196 1.55026 1.35234 0.94586 0.92563 0.91597 0.92074 0.93504 0.92634 0.84783 0.89752 0.91157 0.86437 0.89157 0.82169 0.82067 0.83184 0.86488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.22 9.56 71.98 0.69 -4.53 16 2 C -0.13 -5.71 4.73 30.59 0.14 -5.57 16 3 C 0.20 9.93 1.19 44.17 0.05 9.98 16 4 H -0.02 -0.88 6.31 -2.38 -0.02 -0.90 16 5 C -0.50 -28.94 8.97 25.60 0.23 -28.71 16 6 H 0.04 2.76 8.06 -2.91 -0.02 2.74 16 7 C 0.02 1.39 5.36 84.66 0.45 1.84 16 8 N -0.94 -59.01 13.96 21.45 0.30 -58.71 16 9 Si 0.91 45.47 25.73 68.60 1.76 47.24 16 10 H -0.28 -13.99 7.11 99.48 0.71 -13.28 16 11 H -0.24 -11.20 5.37 99.48 0.53 -10.67 16 12 H -0.28 -13.66 7.11 99.48 0.71 -12.96 16 13 N -0.66 -27.85 5.94 -475.11 -2.82 -30.67 16 14 C 0.05 1.76 2.49 44.56 0.11 1.87 16 15 H 0.09 3.91 7.63 -2.38 -0.02 3.89 16 16 C -0.09 -2.51 5.53 30.62 0.17 -2.35 16 17 C -0.08 -1.74 5.70 29.64 0.17 -1.58 16 18 C -0.03 -0.72 5.78 -19.61 -0.11 -0.83 16 19 C -0.13 -2.16 9.65 22.29 0.22 -1.94 16 20 C -0.08 -1.16 10.03 22.32 0.22 -0.94 16 21 C -0.14 -2.58 10.04 22.23 0.22 -2.35 16 22 C -0.08 -2.12 9.61 22.56 0.22 -1.90 16 23 C -0.19 -5.58 5.82 -20.11 -0.12 -5.70 16 24 C 0.37 13.09 6.55 28.40 0.19 13.28 16 25 O -0.48 -19.57 15.90 -2.96 -0.05 -19.61 16 26 H 0.03 1.44 8.14 -2.38 -0.02 1.42 16 27 H 0.06 2.01 6.62 -2.39 -0.02 2.00 16 28 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 29 H 0.06 2.72 8.14 -2.39 -0.02 2.70 16 30 H 0.05 2.20 4.84 -2.39 -0.01 2.19 16 31 H 0.26 15.61 8.31 -92.71 -0.77 14.84 16 32 H 0.33 13.22 5.85 -89.69 -0.52 12.69 16 33 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 34 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.12 1.63 8.11 -2.39 -0.02 1.61 16 36 H 0.09 1.87 8.14 -2.38 -0.02 1.85 16 37 H 0.16 1.53 8.06 -2.91 -0.02 1.50 16 38 H 0.16 1.17 8.06 -2.91 -0.02 1.15 16 39 H 0.15 1.91 8.06 -2.91 -0.02 1.88 16 40 H 0.12 3.20 7.72 -2.91 -0.02 3.18 16 Total: -1.00 -71.41 318.58 2.39 -69.02 By element: Atomic # 1 Polarization: 21.83 SS G_CDS: 0.34 Total: 22.17 kcal Atomic # 6 Polarization: -32.28 SS G_CDS: 2.85 Total: -29.43 kcal Atomic # 7 Polarization: -86.86 SS G_CDS: -2.52 Total: -89.38 kcal Atomic # 8 Polarization: -19.57 SS G_CDS: -0.05 Total: -19.61 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 1.76 Total: 47.24 kcal Total: -71.41 2.39 -69.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255164565.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.220 kcal (2) G-P(sol) polarization free energy of solvation -71.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds