Wall clock time and date at job start Mon Mar 30 2020 02:38:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53006 * 109.46775 * 2 1 4 4 H 1.09004 * 109.46844 * 177.58931 * 3 2 1 5 5 C 1.50699 * 109.47391 * 57.58496 * 3 2 1 6 6 H 1.07998 * 120.00026 * 240.00277 * 5 3 2 7 7 C 1.37879 * 119.99805 * 60.00287 * 5 3 2 8 8 N 1.31517 * 119.99933 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 119.99694 * 180.02562 * 7 5 3 10 10 H 1.48492 * 109.47365 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47222 * 119.99913 * 9 7 5 12 12 H 1.48499 * 109.46775 * 239.99561 * 9 7 5 13 13 N 1.46901 * 109.46818 * 297.58339 * 3 2 1 14 14 C 1.46895 * 111.00277 * 274.43596 * 13 3 2 15 15 H 1.08996 * 109.86690 * 34.90860 * 14 13 3 16 16 C 1.53432 * 109.88319 * 156.04314 * 14 13 3 17 17 C 1.52620 * 109.38895 * 183.51065 * 16 14 13 18 18 C 1.50415 * 111.22023 * 305.32166 * 17 16 14 19 19 C 1.38316 * 119.12987 * 202.62629 * 18 17 16 20 20 C 1.38241 * 120.36360 * 180.20723 * 19 18 17 21 21 C 1.38427 * 120.48933 * 0.02562 * 20 19 18 22 22 C 1.37901 * 119.95315 * 359.89831 * 21 20 19 23 23 C 1.39577 * 121.61131 * 22.67623 * 18 17 16 24 24 C 1.47586 * 120.10799 * 359.41791 * 23 18 17 25 25 O 1.21255 * 121.18100 * 191.46266 * 24 23 18 26 26 H 1.08994 * 109.46688 * 54.56326 * 1 2 3 27 27 H 1.09006 * 109.46750 * 174.55713 * 1 2 3 28 28 H 1.08995 * 109.47158 * 294.55929 * 1 2 3 29 29 H 1.08997 * 109.47585 * 240.00016 * 2 1 3 30 30 H 1.09001 * 109.47318 * 119.99438 * 2 1 3 31 31 H 0.96998 * 119.99623 * 179.97438 * 8 7 5 32 32 H 1.00900 * 110.99931 * 150.48274 * 13 3 2 33 33 H 1.08997 * 109.52555 * 63.51164 * 16 14 13 34 34 H 1.08993 * 109.43408 * 303.46202 * 16 14 13 35 35 H 1.09008 * 109.11744 * 184.89165 * 17 16 14 36 36 H 1.09003 * 109.11863 * 65.75404 * 17 16 14 37 37 H 1.07999 * 119.81721 * 0.19466 * 19 18 17 38 38 H 1.07999 * 119.75832 * 179.97438 * 20 19 18 39 39 H 1.08004 * 120.02680 * 179.87915 * 21 20 19 40 40 H 1.08003 * 120.11283 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 3.1292 1.4429 0.0432 5 6 1.4894 2.1701 1.1994 6 1 0.8731 3.0465 1.0634 7 6 1.7724 1.7168 2.4704 8 7 2.5225 0.6493 2.6360 9 14 1.0893 2.6182 3.9571 10 1 0.2814 3.7788 3.5042 11 1 0.2329 1.6956 4.7449 12 1 2.2111 3.0969 4.8042 13 7 1.5985 2.1179 -1.2276 14 6 2.5341 1.8673 -2.3320 15 1 2.9394 0.8586 -2.2524 16 6 1.8132 2.0381 -3.6756 17 6 2.7706 1.6905 -4.8121 18 6 4.0375 2.4965 -4.7225 19 6 4.7981 2.6842 -5.8623 20 6 5.9691 3.4169 -5.8082 21 6 6.3960 3.9715 -4.6139 22 6 5.6496 3.7962 -3.4676 23 6 4.4636 3.0580 -3.5178 24 6 3.6604 2.8794 -2.2926 25 8 3.8940 3.5199 -1.2899 26 1 -0.3632 0.5958 -0.8373 27 1 -0.3633 -1.0231 -0.0975 28 1 -0.3633 0.4271 0.9346 29 1 1.8935 -0.5138 -0.8899 30 1 1.8934 -0.5137 0.8900 31 1 2.7219 0.3307 3.5302 32 1 1.4789 3.1078 -1.0727 33 1 1.4818 3.0710 -3.7824 34 1 0.9501 1.3735 -3.7111 35 1 2.2831 1.8963 -5.7651 36 1 3.0176 0.6301 -4.7592 37 1 4.4756 2.2557 -6.7998 38 1 6.5558 3.5569 -6.7041 39 1 7.3131 4.5410 -4.5797 40 1 5.9800 4.2281 -2.5345 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255164566.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:49 Heat of formation + Delta-G solvation = -21.513639 kcal Electronic energy + Delta-G solvation = -21183.506163 eV Core-core repulsion = 18155.410972 eV Total energy + Delta-G solvation = -3028.095191 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.37639 -38.16242 -36.23580 -34.85053 -32.25544 -31.24771 -30.67314 -29.23925 -27.18856 -25.38697 -23.35284 -22.99929 -22.28101 -21.37031 -19.20762 -18.76080 -16.82974 -16.54924 -15.84713 -15.45239 -14.84797 -14.54455 -14.38278 -14.15615 -13.91370 -13.45898 -13.35356 -13.00800 -12.96462 -12.31395 -12.06296 -12.01061 -11.70482 -11.55105 -11.24066 -10.97283 -10.87793 -10.82756 -10.59315 -10.31125 -10.19907 -9.65940 -9.35626 -9.34522 -8.98919 -8.75516 -8.72247 -8.40070 -7.27187 -5.94315 -3.97470 0.78507 1.28521 2.65621 3.34295 3.41896 3.46442 3.76632 4.30743 4.47206 4.60732 4.73956 4.88123 4.97020 5.08210 5.26146 5.29567 5.37500 5.44915 5.58092 5.68869 5.83085 5.87126 5.87954 6.01395 6.15441 6.35245 6.36697 6.40985 6.48884 6.53735 6.71460 6.84700 6.87936 7.23438 7.29475 7.52580 7.75597 7.84127 7.89314 7.93749 8.25486 8.37926 8.67083 9.08375 9.65718 11.12543 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.026645 B = 0.004974 C = 0.004445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.605549 B = 5628.325651 C = 6297.734655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.104 4.104 3 C 0.217 3.783 4 H 0.005 0.995 5 C -0.503 4.503 6 H 0.058 0.942 7 C 0.063 3.937 8 N -0.891 5.891 9 Si 0.892 3.108 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.286 1.286 13 N -0.663 5.663 14 C 0.050 3.950 15 H 0.106 0.894 16 C -0.101 4.101 17 C -0.088 4.088 18 C -0.031 4.031 19 C -0.138 4.138 20 C -0.095 4.095 21 C -0.141 4.141 22 C -0.065 4.065 23 C -0.160 4.160 24 C 0.360 3.640 25 O -0.430 6.430 26 H 0.046 0.954 27 H 0.012 0.988 28 H 0.052 0.948 29 H 0.009 0.991 30 H 0.086 0.914 31 H 0.259 0.741 32 H 0.337 0.663 33 H 0.064 0.936 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.126 0.874 38 H 0.123 0.877 39 H 0.125 0.875 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.949 2.164 -17.664 18.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.142 4.142 3 C 0.109 3.891 4 H 0.023 0.977 5 C -0.541 4.541 6 H 0.076 0.924 7 C -0.139 4.139 8 N -0.530 5.530 9 Si 0.721 3.279 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.212 1.212 13 N -0.293 5.293 14 C -0.062 4.062 15 H 0.123 0.877 16 C -0.139 4.139 17 C -0.125 4.125 18 C -0.031 4.031 19 C -0.156 4.156 20 C -0.113 4.113 21 C -0.159 4.159 22 C -0.083 4.083 23 C -0.162 4.162 24 C 0.233 3.767 25 O -0.302 6.302 26 H 0.065 0.935 27 H 0.031 0.969 28 H 0.071 0.929 29 H 0.027 0.973 30 H 0.104 0.896 31 H 0.068 0.932 32 H 0.155 0.845 33 H 0.083 0.917 34 H 0.105 0.895 35 H 0.099 0.901 36 H 0.103 0.897 37 H 0.144 0.856 38 H 0.141 0.859 39 H 0.143 0.857 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 3.684 1.884 -17.119 17.612 hybrid contribution 0.687 0.996 1.033 1.591 sum 4.372 2.880 -16.086 16.916 Atomic orbital electron populations 1.21438 0.97427 0.97095 1.01642 1.21478 0.95196 0.98269 0.99282 1.19155 0.93769 0.91239 0.84887 0.97702 1.21140 1.31100 1.11617 0.90273 0.92372 1.24849 0.95190 0.95060 0.98770 1.69895 1.37860 1.23366 1.21919 0.86528 0.78713 0.79780 0.82924 1.19802 1.21100 1.21217 1.60913 1.44299 1.16686 1.07389 1.22291 0.90918 0.98552 0.94444 0.87685 1.21500 0.98258 1.02705 0.91469 1.20545 0.92403 0.99542 1.00007 1.20165 0.95955 0.94791 0.92183 1.21080 0.95661 1.00795 0.98064 1.21276 0.95965 0.96247 0.97818 1.21123 1.00448 1.01542 0.92753 1.21474 0.93195 0.94772 0.98897 1.20678 0.97764 1.01988 0.95724 1.24181 0.84271 0.82619 0.85622 1.90587 1.64876 1.41570 1.33196 0.93466 0.96866 0.92876 0.97264 0.89569 0.93155 0.84460 0.91737 0.89493 0.90089 0.89672 0.85639 0.85935 0.85728 0.85108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.64 9.45 37.16 0.35 -2.29 16 2 C -0.10 -2.51 5.55 -26.72 -0.15 -2.65 16 3 C 0.22 5.48 1.86 -68.86 -0.13 5.35 16 4 H 0.01 0.15 7.33 -51.93 -0.38 -0.23 16 5 C -0.50 -13.92 7.32 -34.44 -0.25 -14.17 16 6 H 0.06 1.62 7.61 -52.49 -0.40 1.22 16 7 C 0.06 1.76 5.30 -17.82 -0.09 1.66 16 8 N -0.89 -25.85 11.34 55.43 0.63 -25.22 16 9 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 10 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 13 N -0.66 -13.98 5.19 -101.53 -0.53 -14.51 16 14 C 0.05 0.88 2.51 -68.26 -0.17 0.71 16 15 H 0.11 1.90 7.18 -51.93 -0.37 1.53 16 16 C -0.10 -1.34 5.52 -26.70 -0.15 -1.49 16 17 C -0.09 -0.93 5.70 -28.22 -0.16 -1.10 16 18 C -0.03 -0.38 5.78 -104.23 -0.60 -0.98 16 19 C -0.14 -1.41 9.65 -39.55 -0.38 -1.80 16 20 C -0.09 -0.94 10.03 -39.51 -0.40 -1.33 16 21 C -0.14 -1.57 10.04 -39.64 -0.40 -1.97 16 22 C -0.07 -0.92 9.61 -39.13 -0.38 -1.29 16 23 C -0.16 -2.43 5.82 -105.01 -0.61 -3.04 16 24 C 0.36 6.63 6.49 -30.11 -0.20 6.44 16 25 O -0.43 -9.63 15.76 5.58 0.09 -9.55 16 26 H 0.05 1.00 7.52 -51.93 -0.39 0.61 16 27 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.05 1.28 7.36 -51.93 -0.38 0.90 16 29 H 0.01 0.19 7.46 -51.93 -0.39 -0.19 16 30 H 0.09 2.33 6.14 -51.93 -0.32 2.01 16 31 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 32 H 0.34 7.41 7.60 -39.29 -0.30 7.11 16 33 H 0.06 0.86 8.13 -51.93 -0.42 0.43 16 34 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.08 0.68 8.11 -51.92 -0.42 0.25 16 36 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 38 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 39 H 0.12 1.09 8.06 -52.48 -0.42 0.66 16 40 H 0.13 1.90 7.72 -52.48 -0.41 1.50 16 LS Contribution 322.83 15.07 4.86 4.86 Total: -1.00 -30.80 322.83 -9.53 -40.33 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: -5.85 Total: 5.15 kcal Atomic # 6 Polarization: -14.23 SS G_CDS: -3.71 Total: -17.94 kcal Atomic # 7 Polarization: -39.83 SS G_CDS: 0.10 Total: -39.72 kcal Atomic # 8 Polarization: -9.63 SS G_CDS: 0.09 Total: -9.55 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -30.80 -9.53 -40.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255164566.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.817 kcal (2) G-P(sol) polarization free energy of solvation -30.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds