Wall clock time and date at job start Mon Mar 30 2020 02:38:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53006 * 109.46775 * 2 1 4 4 H 1.09004 * 109.46844 * 177.58931 * 3 2 1 5 5 C 1.50699 * 109.47391 * 57.58496 * 3 2 1 6 6 H 1.07998 * 120.00026 * 240.00277 * 5 3 2 7 7 C 1.37879 * 119.99805 * 60.00287 * 5 3 2 8 8 N 1.31517 * 119.99933 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 119.99694 * 180.02562 * 7 5 3 10 10 H 1.48492 * 109.47365 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47222 * 119.99913 * 9 7 5 12 12 H 1.48499 * 109.46775 * 239.99561 * 9 7 5 13 13 N 1.46901 * 109.46818 * 297.58339 * 3 2 1 14 14 C 1.46895 * 111.00277 * 274.43596 * 13 3 2 15 15 H 1.08996 * 109.86690 * 34.90860 * 14 13 3 16 16 C 1.53432 * 109.88319 * 156.04314 * 14 13 3 17 17 C 1.52620 * 109.38895 * 183.51065 * 16 14 13 18 18 C 1.50415 * 111.22023 * 305.32166 * 17 16 14 19 19 C 1.38316 * 119.12987 * 202.62629 * 18 17 16 20 20 C 1.38241 * 120.36360 * 180.20723 * 19 18 17 21 21 C 1.38427 * 120.48933 * 0.02562 * 20 19 18 22 22 C 1.37901 * 119.95315 * 359.89831 * 21 20 19 23 23 C 1.39577 * 121.61131 * 22.67623 * 18 17 16 24 24 C 1.47586 * 120.10799 * 359.41791 * 23 18 17 25 25 O 1.21255 * 121.18100 * 191.46266 * 24 23 18 26 26 H 1.08994 * 109.46688 * 54.56326 * 1 2 3 27 27 H 1.09006 * 109.46750 * 174.55713 * 1 2 3 28 28 H 1.08995 * 109.47158 * 294.55929 * 1 2 3 29 29 H 1.08997 * 109.47585 * 240.00016 * 2 1 3 30 30 H 1.09001 * 109.47318 * 119.99438 * 2 1 3 31 31 H 0.96998 * 119.99623 * 179.97438 * 8 7 5 32 32 H 1.00900 * 110.99931 * 150.48274 * 13 3 2 33 33 H 1.08997 * 109.52555 * 63.51164 * 16 14 13 34 34 H 1.08993 * 109.43408 * 303.46202 * 16 14 13 35 35 H 1.09008 * 109.11744 * 184.89165 * 17 16 14 36 36 H 1.09003 * 109.11863 * 65.75404 * 17 16 14 37 37 H 1.07999 * 119.81721 * 0.19466 * 19 18 17 38 38 H 1.07999 * 119.75832 * 179.97438 * 20 19 18 39 39 H 1.08004 * 120.02680 * 179.87915 * 21 20 19 40 40 H 1.08003 * 120.11283 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 3.1292 1.4429 0.0432 5 6 1.4894 2.1701 1.1994 6 1 0.8731 3.0465 1.0634 7 6 1.7724 1.7168 2.4704 8 7 2.5225 0.6493 2.6360 9 14 1.0893 2.6182 3.9571 10 1 0.2814 3.7788 3.5042 11 1 0.2329 1.6956 4.7449 12 1 2.2111 3.0969 4.8042 13 7 1.5985 2.1179 -1.2276 14 6 2.5341 1.8673 -2.3320 15 1 2.9394 0.8586 -2.2524 16 6 1.8132 2.0381 -3.6756 17 6 2.7706 1.6905 -4.8121 18 6 4.0375 2.4965 -4.7225 19 6 4.7981 2.6842 -5.8623 20 6 5.9691 3.4169 -5.8082 21 6 6.3960 3.9715 -4.6139 22 6 5.6496 3.7962 -3.4676 23 6 4.4636 3.0580 -3.5178 24 6 3.6604 2.8794 -2.2926 25 8 3.8940 3.5199 -1.2899 26 1 -0.3632 0.5958 -0.8373 27 1 -0.3633 -1.0231 -0.0975 28 1 -0.3633 0.4271 0.9346 29 1 1.8935 -0.5138 -0.8899 30 1 1.8934 -0.5137 0.8900 31 1 2.7219 0.3307 3.5302 32 1 1.4789 3.1078 -1.0727 33 1 1.4818 3.0710 -3.7824 34 1 0.9501 1.3735 -3.7111 35 1 2.2831 1.8963 -5.7651 36 1 3.0176 0.6301 -4.7592 37 1 4.4756 2.2557 -6.7998 38 1 6.5558 3.5569 -6.7041 39 1 7.3131 4.5410 -4.5797 40 1 5.9800 4.2281 -2.5345 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255164566.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:48 Heat of formation + Delta-G solvation = -40.081520 kcal Electronic energy + Delta-G solvation = -21184.311327 eV Core-core repulsion = 18155.410972 eV Total energy + Delta-G solvation = -3028.900355 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.59454 -39.38466 -37.91064 -36.24399 -34.04712 -32.54864 -32.12519 -30.45508 -28.71292 -27.15232 -25.16665 -24.14601 -23.50031 -22.40555 -21.01254 -20.13182 -18.38750 -17.95604 -17.34033 -16.86625 -16.43493 -15.81041 -15.66763 -15.54210 -15.26570 -15.00215 -14.81176 -14.34593 -14.32570 -13.92321 -13.62028 -13.23342 -13.00500 -12.94042 -12.83360 -12.52125 -12.46088 -12.18841 -12.10447 -12.07111 -11.84382 -11.49742 -11.27902 -10.87323 -10.76959 -10.51547 -9.95027 -9.65558 -9.04816 -8.11003 -6.21241 -0.29420 0.39124 1.36912 1.38246 1.41401 1.50026 2.40780 2.79714 3.03366 3.18324 3.47159 3.72426 3.88670 3.93191 4.11657 4.25282 4.33095 4.39754 4.45173 4.60161 4.64874 4.70417 4.80349 4.88732 4.96819 5.02608 5.09124 5.16753 5.27384 5.32250 5.40137 5.46755 5.49484 5.50061 5.57381 5.69653 5.84783 5.89449 5.98768 6.25735 6.37605 6.50419 6.72661 6.96681 7.45649 8.95005 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.026645 B = 0.004974 C = 0.004445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.605549 B = 5628.325651 C = 6297.734655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.098 4.098 3 C 0.227 3.773 4 H -0.044 1.044 5 C -0.517 4.517 6 H 0.050 0.950 7 C 0.015 3.985 8 N -0.918 5.918 9 Si 0.953 3.047 10 H -0.269 1.269 11 H -0.275 1.275 12 H -0.286 1.286 13 N -0.655 5.655 14 C 0.044 3.956 15 H 0.098 0.902 16 C -0.090 4.090 17 C -0.082 4.082 18 C -0.031 4.031 19 C -0.131 4.131 20 C -0.081 4.081 21 C -0.142 4.142 22 C -0.089 4.089 23 C -0.194 4.194 24 C 0.357 3.643 25 O -0.491 6.491 26 H 0.058 0.942 27 H 0.038 0.962 28 H 0.028 0.972 29 H 0.027 0.973 30 H 0.054 0.946 31 H 0.260 0.740 32 H 0.328 0.672 33 H 0.063 0.937 34 H 0.098 0.902 35 H 0.120 0.880 36 H 0.099 0.901 37 H 0.166 0.834 38 H 0.163 0.837 39 H 0.148 0.852 40 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.519 1.846 -21.363 21.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.137 4.137 3 C 0.119 3.881 4 H -0.027 1.027 5 C -0.556 4.556 6 H 0.069 0.931 7 C -0.184 4.184 8 N -0.558 5.558 9 Si 0.779 3.221 10 H -0.193 1.193 11 H -0.200 1.200 12 H -0.212 1.212 13 N -0.283 5.283 14 C -0.068 4.068 15 H 0.116 0.884 16 C -0.129 4.129 17 C -0.119 4.119 18 C -0.032 4.032 19 C -0.149 4.149 20 C -0.098 4.098 21 C -0.160 4.160 22 C -0.108 4.108 23 C -0.196 4.196 24 C 0.235 3.765 25 O -0.368 6.368 26 H 0.077 0.923 27 H 0.057 0.943 28 H 0.047 0.953 29 H 0.046 0.954 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.145 0.855 33 H 0.081 0.919 34 H 0.117 0.883 35 H 0.138 0.862 36 H 0.117 0.883 37 H 0.184 0.816 38 H 0.181 0.819 39 H 0.165 0.835 40 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 3.247 1.553 -20.859 21.168 hybrid contribution 0.930 1.105 2.056 2.512 sum 4.176 2.657 -18.804 19.444 Atomic orbital electron populations 1.21293 0.95529 0.98726 1.00756 1.21328 0.96734 0.97041 0.98581 1.18874 0.90627 0.92386 0.86259 1.02690 1.21413 1.30973 1.11559 0.91621 0.93135 1.25607 0.95507 0.95818 1.01454 1.70030 1.38790 1.24529 1.22451 0.85579 0.78088 0.78861 0.79574 1.19295 1.20038 1.21224 1.60889 1.45216 1.15626 1.06526 1.22504 0.90941 0.97863 0.95493 0.88436 1.21462 0.98848 1.03039 0.89502 1.20619 0.91101 0.99966 1.00243 1.20428 0.96910 0.94210 0.91609 1.21537 0.95021 0.99805 0.98515 1.21796 0.95736 0.93992 0.98319 1.21416 1.00789 1.01544 0.92211 1.21480 0.94004 0.95799 0.99498 1.20495 0.98526 1.05177 0.95386 1.24617 0.84282 0.81432 0.86171 1.90551 1.66615 1.44126 1.35556 0.92286 0.94270 0.95328 0.95446 0.92710 0.93123 0.85476 0.91871 0.88343 0.86184 0.88264 0.81618 0.81906 0.83459 0.87521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.67 9.45 71.98 0.68 -3.99 16 2 C -0.10 -4.87 5.55 30.60 0.17 -4.70 16 3 C 0.23 12.08 1.86 44.17 0.08 12.16 16 4 H -0.04 -2.76 7.33 -2.38 -0.02 -2.78 16 5 C -0.52 -29.93 7.32 25.60 0.19 -29.74 16 6 H 0.05 2.93 7.61 -2.91 -0.02 2.91 16 7 C 0.01 0.86 5.30 84.65 0.45 1.31 16 8 N -0.92 -55.40 11.34 21.45 0.24 -55.15 16 9 Si 0.95 46.15 29.54 68.60 2.03 48.17 16 10 H -0.27 -12.68 7.11 99.48 0.71 -11.98 16 11 H -0.27 -12.80 7.11 99.48 0.71 -12.10 16 12 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 13 N -0.65 -28.71 5.19 -475.13 -2.46 -31.18 16 14 C 0.04 1.58 2.51 44.56 0.11 1.69 16 15 H 0.10 3.65 7.18 -2.39 -0.02 3.63 16 16 C -0.09 -2.24 5.52 30.61 0.17 -2.08 16 17 C -0.08 -1.45 5.70 29.63 0.17 -1.28 16 18 C -0.03 -0.69 5.78 -19.61 -0.11 -0.80 16 19 C -0.13 -2.04 9.65 22.29 0.22 -1.82 16 20 C -0.08 -1.22 10.03 22.32 0.22 -0.99 16 21 C -0.14 -2.88 10.04 22.23 0.22 -2.66 16 22 C -0.09 -2.61 9.61 22.56 0.22 -2.39 16 23 C -0.19 -6.00 5.82 -20.11 -0.12 -6.12 16 24 C 0.36 14.06 6.49 28.40 0.18 14.24 16 25 O -0.49 -24.25 15.76 -2.95 -0.05 -24.30 16 26 H 0.06 2.43 7.52 -2.39 -0.02 2.42 16 27 H 0.04 1.50 8.14 -2.38 -0.02 1.48 16 28 H 0.03 1.37 7.36 -2.39 -0.02 1.35 16 29 H 0.03 1.22 7.46 -2.39 -0.02 1.20 16 30 H 0.05 3.07 6.14 -2.39 -0.01 3.06 16 31 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 32 H 0.33 15.28 7.60 -89.69 -0.68 14.60 16 33 H 0.06 1.59 8.13 -2.39 -0.02 1.57 16 34 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 35 H 0.12 1.29 8.11 -2.38 -0.02 1.27 16 36 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.17 1.31 8.06 -2.91 -0.02 1.29 16 38 H 0.16 1.22 8.06 -2.91 -0.02 1.20 16 39 H 0.15 2.22 8.06 -2.91 -0.02 2.20 16 40 H 0.11 3.48 7.72 -2.91 -0.02 3.46 16 Total: -1.00 -73.02 322.83 2.96 -70.05 By element: Atomic # 1 Polarization: 19.20 SS G_CDS: 0.35 Total: 19.56 kcal Atomic # 6 Polarization: -30.01 SS G_CDS: 2.85 Total: -27.16 kcal Atomic # 7 Polarization: -84.11 SS G_CDS: -2.22 Total: -86.33 kcal Atomic # 8 Polarization: -24.25 SS G_CDS: -0.05 Total: -24.30 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 2.03 Total: 48.17 kcal Total: -73.02 2.96 -70.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255164566.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.970 kcal (2) G-P(sol) polarization free energy of solvation -73.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds