Wall clock time and date at job start Mon Mar 30 2020 02:38:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52995 * 109.47282 * 2 1 4 4 H 1.09002 * 109.47112 * 302.75897 * 3 2 1 5 5 C 1.50702 * 109.47441 * 182.75646 * 3 2 1 6 6 H 1.07997 * 120.00302 * 245.63264 * 5 3 2 7 7 C 1.37884 * 119.99911 * 65.63316 * 5 3 2 8 8 N 1.31510 * 119.99707 * 193.27406 * 7 5 3 9 9 Si 1.86800 * 119.99988 * 13.27099 * 7 5 3 10 10 H 1.48497 * 109.47110 * 86.03319 * 9 7 5 11 11 H 1.48497 * 109.47042 * 206.03385 * 9 7 5 12 12 H 1.48502 * 109.47135 * 326.03109 * 9 7 5 13 13 N 1.46900 * 109.47090 * 62.75524 * 3 2 1 14 14 C 1.46901 * 110.99832 * 200.62160 * 13 3 2 15 15 H 1.08999 * 109.86712 * 330.22990 * 14 13 3 16 16 C 1.53439 * 109.87377 * 209.22972 * 14 13 3 17 17 C 1.52631 * 109.37266 * 176.54678 * 16 14 13 18 18 C 1.50419 * 111.26140 * 54.62501 * 17 16 14 19 19 C 1.38301 * 119.13322 * 157.35437 * 18 17 16 20 20 C 1.38255 * 120.36451 * 179.79465 * 19 18 17 21 21 C 1.38421 * 120.48541 * 0.02562 * 20 19 18 22 22 C 1.37899 * 119.95862 * 0.06846 * 21 20 19 23 23 C 1.39589 * 121.60515 * 337.31454 * 18 17 16 24 24 C 1.47585 * 120.10447 * 0.58713 * 23 18 17 25 25 O 1.21253 * 121.17184 * 168.57499 * 24 23 18 26 26 H 1.08998 * 109.47285 * 184.90237 * 1 2 3 27 27 H 1.09000 * 109.46725 * 304.89761 * 1 2 3 28 28 H 1.08998 * 109.47509 * 64.89562 * 1 2 3 29 29 H 1.09002 * 109.46880 * 239.99531 * 2 1 3 30 30 H 1.09001 * 109.47317 * 120.00261 * 2 1 3 31 31 H 0.97007 * 119.99538 * 179.97438 * 8 7 5 32 32 H 1.00901 * 110.99949 * 76.67068 * 13 3 2 33 33 H 1.08996 * 109.49038 * 296.51354 * 16 14 13 34 34 H 1.09003 * 109.48832 * 56.58090 * 16 14 13 35 35 H 1.08999 * 109.12849 * 175.08844 * 17 16 14 36 36 H 1.09003 * 109.12077 * 294.23511 * 17 16 14 37 37 H 1.08006 * 119.82074 * 359.82436 * 19 18 17 38 38 H 1.08001 * 119.75571 * 180.02562 * 20 19 18 39 39 H 1.08002 * 120.02565 * 180.02562 * 21 20 19 40 40 H 1.07991 * 120.12132 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6368 1.9704 -0.8642 5 6 3.5454 1.4430 -0.0683 6 1 4.1237 1.8154 0.7643 7 6 4.1847 0.9681 -1.1940 8 7 5.4763 0.7227 -1.1624 9 14 3.2160 0.6733 -2.7638 10 1 3.1375 1.9360 -3.5414 11 1 3.8954 -0.3672 -3.5766 12 1 1.8450 0.2169 -2.4211 13 7 1.6054 2.1154 1.2313 14 6 1.6329 3.5754 1.0711 15 1 2.4097 3.8554 0.3594 16 6 1.9012 4.2439 2.4259 17 6 2.0128 5.7538 2.2322 18 6 0.7979 6.3060 1.5381 19 6 0.4874 7.6453 1.6879 20 6 -0.6209 8.1805 1.0580 21 6 -1.4339 7.3839 0.2703 22 6 -1.1409 6.0458 0.1110 23 6 -0.0221 5.4998 0.7466 24 6 0.2851 4.0655 0.5837 25 8 -0.5132 3.3063 0.0773 26 1 -0.3634 -1.0239 0.0878 27 1 -0.3633 0.5880 0.8429 28 1 -0.3634 0.4360 -0.9305 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 5.9259 0.3882 -1.9542 32 1 2.1673 1.8274 2.0184 33 1 1.0802 4.0247 3.1085 34 1 2.8329 3.8610 2.8423 35 1 2.1158 6.2322 3.2061 36 1 2.8960 5.9724 1.6319 37 1 1.1143 8.2768 2.3000 38 1 -0.8540 9.2278 1.1814 39 1 -2.2975 7.8098 -0.2187 40 1 -1.7732 5.4220 -0.5033 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255164567.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:52 Heat of formation + Delta-G solvation = -18.250361 kcal Electronic energy + Delta-G solvation = -21309.441468 eV Core-core repulsion = 18281.487783 eV Total energy + Delta-G solvation = -3027.953685 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.28920 -38.02198 -36.41868 -34.89914 -32.21711 -31.58827 -31.08854 -29.25135 -27.41451 -25.89091 -23.25135 -22.70546 -22.00018 -21.37133 -19.60786 -18.73272 -17.12364 -16.62478 -15.93055 -15.59420 -14.88198 -14.72121 -14.39231 -13.98026 -13.94414 -13.64546 -13.35650 -13.09943 -12.85978 -12.50354 -12.32444 -12.09431 -11.84559 -11.54987 -11.47514 -11.33806 -10.95987 -10.81340 -10.70796 -10.58323 -10.16287 -9.72264 -9.50309 -9.20099 -9.02255 -8.96690 -8.73271 -8.48607 -7.36663 -6.15633 -4.13118 0.81830 1.29693 2.74294 3.28697 3.37761 3.44570 3.79321 4.25199 4.40612 4.61034 4.75790 4.88637 4.98595 5.07302 5.18402 5.25219 5.35546 5.36607 5.63010 5.70980 5.80916 5.85385 5.91112 6.03236 6.13199 6.24038 6.30116 6.35336 6.40680 6.42424 6.47735 6.51336 6.82631 6.85875 6.95366 7.18282 7.28462 7.44479 7.58634 7.93427 8.09820 8.36365 8.46080 8.88806 9.51654 10.97035 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.021889 B = 0.005580 C = 0.005314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.848985 B = 5016.419993 C = 5268.238157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.111 4.111 3 C 0.191 3.809 4 H 0.029 0.971 5 C -0.554 4.554 6 H 0.072 0.928 7 C 0.081 3.919 8 N -0.892 5.892 9 Si 0.858 3.142 10 H -0.280 1.280 11 H -0.288 1.288 12 H -0.244 1.244 13 N -0.663 5.663 14 C 0.051 3.949 15 H 0.091 0.909 16 C -0.114 4.114 17 C -0.086 4.086 18 C -0.030 4.030 19 C -0.137 4.137 20 C -0.095 4.095 21 C -0.141 4.141 22 C -0.065 4.065 23 C -0.157 4.157 24 C 0.398 3.602 25 O -0.429 6.429 26 H 0.026 0.974 27 H 0.063 0.937 28 H 0.037 0.963 29 H 0.054 0.946 30 H 0.050 0.950 31 H 0.263 0.737 32 H 0.339 0.661 33 H 0.071 0.929 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.087 0.913 37 H 0.126 0.874 38 H 0.123 0.877 39 H 0.125 0.875 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.945 13.337 6.207 17.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.150 4.150 3 C 0.082 3.918 4 H 0.047 0.953 5 C -0.592 4.592 6 H 0.090 0.910 7 C -0.123 4.123 8 N -0.529 5.529 9 Si 0.685 3.315 10 H -0.206 1.206 11 H -0.214 1.214 12 H -0.168 1.168 13 N -0.293 5.293 14 C -0.061 4.061 15 H 0.109 0.891 16 C -0.152 4.152 17 C -0.124 4.124 18 C -0.030 4.030 19 C -0.155 4.155 20 C -0.113 4.113 21 C -0.159 4.159 22 C -0.084 4.084 23 C -0.159 4.159 24 C 0.272 3.728 25 O -0.301 6.301 26 H 0.045 0.955 27 H 0.082 0.918 28 H 0.056 0.944 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.158 0.842 33 H 0.089 0.911 34 H 0.100 0.900 35 H 0.100 0.900 36 H 0.106 0.894 37 H 0.144 0.856 38 H 0.141 0.859 39 H 0.142 0.858 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -10.882 12.773 5.684 17.717 hybrid contribution 0.732 0.169 -1.013 1.262 sum -10.150 12.942 4.671 17.098 Atomic orbital electron populations 1.21684 0.97516 0.98674 1.01697 1.21838 0.93788 0.98669 1.00684 1.19499 0.93352 0.90968 0.87998 0.95294 1.21730 0.90394 1.43596 1.03497 0.91037 1.24918 0.94617 0.93939 0.98829 1.69975 1.09607 1.43919 1.29422 0.87323 0.82179 0.78276 0.83746 1.20629 1.21436 1.16817 1.60580 1.59006 1.01765 1.07997 1.21951 0.95046 0.91622 0.97481 0.89139 1.21695 1.03080 0.93589 0.96829 1.20512 0.95401 0.96042 1.00412 1.20153 0.94905 0.93223 0.94768 1.21079 0.98214 0.94623 1.01567 1.21271 0.94521 0.99687 0.95857 1.21107 1.00505 0.93875 1.00387 1.21419 0.95019 0.95146 0.96776 1.20613 0.97378 0.96385 1.01489 1.22988 0.88627 0.86234 0.74926 1.90462 1.49200 1.58216 1.32192 0.95499 0.91767 0.94372 0.92788 0.93110 0.92689 0.84245 0.91069 0.90032 0.90049 0.89435 0.85635 0.85943 0.85750 0.85109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.85 9.84 37.16 0.37 -2.48 16 2 C -0.11 -2.54 4.98 -26.74 -0.13 -2.67 16 3 C 0.19 4.51 1.29 -68.87 -0.09 4.42 16 4 H 0.03 0.74 6.57 -51.93 -0.34 0.40 16 5 C -0.55 -14.92 8.54 -34.44 -0.29 -15.21 16 6 H 0.07 2.05 8.01 -52.49 -0.42 1.63 16 7 C 0.08 2.28 5.37 -17.82 -0.10 2.18 16 8 N -0.89 -26.73 13.96 55.43 0.77 -25.96 16 9 Si 0.86 21.46 25.87 -169.99 -4.40 17.06 16 10 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 11 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 12 H -0.24 -5.89 5.31 56.52 0.30 -5.59 16 13 N -0.66 -13.34 5.02 -101.53 -0.51 -13.85 16 14 C 0.05 0.90 2.51 -68.26 -0.17 0.73 16 15 H 0.09 1.80 7.46 -51.93 -0.39 1.42 16 16 C -0.11 -1.54 5.18 -26.69 -0.14 -1.68 16 17 C -0.09 -0.98 5.70 -28.21 -0.16 -1.14 16 18 C -0.03 -0.38 5.78 -104.23 -0.60 -0.98 16 19 C -0.14 -1.43 9.65 -39.55 -0.38 -1.81 16 20 C -0.10 -0.94 10.03 -39.51 -0.40 -1.33 16 21 C -0.14 -1.53 10.04 -39.64 -0.40 -1.93 16 22 C -0.07 -0.89 9.61 -39.13 -0.38 -1.27 16 23 C -0.16 -2.37 5.82 -105.00 -0.61 -2.98 16 24 C 0.40 7.20 6.76 -30.12 -0.20 7.00 16 25 O -0.43 -8.95 16.58 5.58 0.09 -8.86 16 26 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.06 1.32 7.54 -51.93 -0.39 0.93 16 28 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.05 1.29 4.69 -51.93 -0.24 1.05 16 30 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 32 H 0.34 6.54 8.06 -39.29 -0.32 6.22 16 33 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.08 1.06 8.08 -51.93 -0.42 0.64 16 35 H 0.08 0.72 8.10 -51.93 -0.42 0.30 16 36 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.13 0.99 8.06 -52.48 -0.42 0.57 16 38 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 39 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 40 H 0.13 1.78 7.72 -52.49 -0.40 1.38 16 LS Contribution 321.47 15.07 4.84 4.84 Total: -1.00 -31.13 321.47 -8.85 -39.98 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -5.96 Total: 5.95 kcal Atomic # 6 Polarization: -15.48 SS G_CDS: -3.68 Total: -19.17 kcal Atomic # 7 Polarization: -40.07 SS G_CDS: 0.26 Total: -39.81 kcal Atomic # 8 Polarization: -8.95 SS G_CDS: 0.09 Total: -8.86 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.40 Total: 17.06 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -31.13 -8.85 -39.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255164567.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.729 kcal (2) G-P(sol) polarization free energy of solvation -31.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds