Wall clock time and date at job start Mon Mar 30 2020 02:38:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52995 * 109.47282 * 2 1 4 4 H 1.09002 * 109.47112 * 302.75897 * 3 2 1 5 5 C 1.50702 * 109.47441 * 182.75646 * 3 2 1 6 6 H 1.07997 * 120.00302 * 245.63264 * 5 3 2 7 7 C 1.37884 * 119.99911 * 65.63316 * 5 3 2 8 8 N 1.31510 * 119.99707 * 193.27406 * 7 5 3 9 9 Si 1.86800 * 119.99988 * 13.27099 * 7 5 3 10 10 H 1.48497 * 109.47110 * 86.03319 * 9 7 5 11 11 H 1.48497 * 109.47042 * 206.03385 * 9 7 5 12 12 H 1.48502 * 109.47135 * 326.03109 * 9 7 5 13 13 N 1.46900 * 109.47090 * 62.75524 * 3 2 1 14 14 C 1.46901 * 110.99832 * 200.62160 * 13 3 2 15 15 H 1.08999 * 109.86712 * 330.22990 * 14 13 3 16 16 C 1.53439 * 109.87377 * 209.22972 * 14 13 3 17 17 C 1.52631 * 109.37266 * 176.54678 * 16 14 13 18 18 C 1.50419 * 111.26140 * 54.62501 * 17 16 14 19 19 C 1.38301 * 119.13322 * 157.35437 * 18 17 16 20 20 C 1.38255 * 120.36451 * 179.79465 * 19 18 17 21 21 C 1.38421 * 120.48541 * 0.02562 * 20 19 18 22 22 C 1.37899 * 119.95862 * 0.06846 * 21 20 19 23 23 C 1.39589 * 121.60515 * 337.31454 * 18 17 16 24 24 C 1.47585 * 120.10447 * 0.58713 * 23 18 17 25 25 O 1.21253 * 121.17184 * 168.57499 * 24 23 18 26 26 H 1.08998 * 109.47285 * 184.90237 * 1 2 3 27 27 H 1.09000 * 109.46725 * 304.89761 * 1 2 3 28 28 H 1.08998 * 109.47509 * 64.89562 * 1 2 3 29 29 H 1.09002 * 109.46880 * 239.99531 * 2 1 3 30 30 H 1.09001 * 109.47317 * 120.00261 * 2 1 3 31 31 H 0.97007 * 119.99538 * 179.97438 * 8 7 5 32 32 H 1.00901 * 110.99949 * 76.67068 * 13 3 2 33 33 H 1.08996 * 109.49038 * 296.51354 * 16 14 13 34 34 H 1.09003 * 109.48832 * 56.58090 * 16 14 13 35 35 H 1.08999 * 109.12849 * 175.08844 * 17 16 14 36 36 H 1.09003 * 109.12077 * 294.23511 * 17 16 14 37 37 H 1.08006 * 119.82074 * 359.82436 * 19 18 17 38 38 H 1.08001 * 119.75571 * 180.02562 * 20 19 18 39 39 H 1.08002 * 120.02565 * 180.02562 * 21 20 19 40 40 H 1.07991 * 120.12132 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6368 1.9704 -0.8642 5 6 3.5454 1.4430 -0.0683 6 1 4.1237 1.8154 0.7643 7 6 4.1847 0.9681 -1.1940 8 7 5.4763 0.7227 -1.1624 9 14 3.2160 0.6733 -2.7638 10 1 3.1375 1.9360 -3.5414 11 1 3.8954 -0.3672 -3.5766 12 1 1.8450 0.2169 -2.4211 13 7 1.6054 2.1154 1.2313 14 6 1.6329 3.5754 1.0711 15 1 2.4097 3.8554 0.3594 16 6 1.9012 4.2439 2.4259 17 6 2.0128 5.7538 2.2322 18 6 0.7979 6.3060 1.5381 19 6 0.4874 7.6453 1.6879 20 6 -0.6209 8.1805 1.0580 21 6 -1.4339 7.3839 0.2703 22 6 -1.1409 6.0458 0.1110 23 6 -0.0221 5.4998 0.7466 24 6 0.2851 4.0655 0.5837 25 8 -0.5132 3.3063 0.0773 26 1 -0.3634 -1.0239 0.0878 27 1 -0.3633 0.5880 0.8429 28 1 -0.3634 0.4360 -0.9305 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 5.9259 0.3882 -1.9542 32 1 2.1673 1.8274 2.0184 33 1 1.0802 4.0247 3.1085 34 1 2.8329 3.8610 2.8423 35 1 2.1158 6.2322 3.2061 36 1 2.8960 5.9724 1.6319 37 1 1.1143 8.2768 2.3000 38 1 -0.8540 9.2278 1.1814 39 1 -2.2975 7.8098 -0.2187 40 1 -1.7732 5.4220 -0.5033 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255164567.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:51 Heat of formation + Delta-G solvation = -37.541831 kcal Electronic energy + Delta-G solvation = -21310.278009 eV Core-core repulsion = 18281.487783 eV Total energy + Delta-G solvation = -3028.790226 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.44640 -39.23033 -38.03869 -36.24266 -34.22242 -33.07432 -32.11335 -30.45734 -29.00747 -27.47061 -24.56061 -24.12759 -23.34715 -22.41942 -21.45237 -19.92014 -19.11488 -17.82965 -17.20796 -17.01103 -16.49497 -15.89988 -15.64529 -15.50185 -15.20908 -15.05607 -14.82864 -14.48412 -14.24767 -14.06384 -13.77295 -13.41063 -13.32625 -13.08868 -12.90903 -12.61641 -12.60402 -12.27697 -12.17795 -11.84973 -11.81750 -11.53615 -11.45347 -11.08565 -10.66057 -10.48374 -9.90862 -9.63495 -9.08590 -8.37247 -6.36763 -0.22206 0.41708 1.25734 1.31433 1.42000 1.53071 2.29046 2.83020 2.95389 3.00863 3.57871 3.67617 3.86954 3.98479 4.11786 4.24430 4.32131 4.42181 4.43403 4.51767 4.53616 4.61945 4.68700 4.74958 4.87722 4.94008 5.01934 5.03990 5.11008 5.17501 5.24039 5.37021 5.44656 5.49244 5.50712 5.52490 5.52901 5.69570 6.00067 6.06369 6.33269 6.60735 6.70682 6.79380 7.31400 8.78349 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.021889 B = 0.005580 C = 0.005314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.848985 B = 5016.419993 C = 5268.238157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.112 4.112 3 C 0.201 3.799 4 H 0.009 0.991 5 C -0.546 4.546 6 H 0.045 0.955 7 C 0.032 3.968 8 N -0.934 5.934 9 Si 0.909 3.091 10 H -0.282 1.282 11 H -0.283 1.283 12 H -0.232 1.232 13 N -0.660 5.660 14 C 0.044 3.956 15 H 0.064 0.936 16 C -0.105 4.105 17 C -0.082 4.082 18 C -0.036 4.036 19 C -0.133 4.133 20 C -0.083 4.083 21 C -0.140 4.140 22 C -0.084 4.084 23 C -0.190 4.190 24 C 0.396 3.604 25 O -0.471 6.471 26 H 0.053 0.947 27 H 0.060 0.940 28 H 0.027 0.973 29 H 0.042 0.958 30 H 0.053 0.947 31 H 0.265 0.735 32 H 0.342 0.658 33 H 0.077 0.923 34 H 0.086 0.914 35 H 0.118 0.882 36 H 0.088 0.912 37 H 0.160 0.840 38 H 0.161 0.839 39 H 0.151 0.849 40 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.258 15.790 7.261 20.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.151 4.151 3 C 0.091 3.909 4 H 0.027 0.973 5 C -0.585 4.585 6 H 0.064 0.936 7 C -0.167 4.167 8 N -0.573 5.573 9 Si 0.734 3.266 10 H -0.208 1.208 11 H -0.209 1.209 12 H -0.156 1.156 13 N -0.290 5.290 14 C -0.068 4.068 15 H 0.082 0.918 16 C -0.143 4.143 17 C -0.119 4.119 18 C -0.036 4.036 19 C -0.151 4.151 20 C -0.101 4.101 21 C -0.158 4.158 22 C -0.102 4.102 23 C -0.191 4.191 24 C 0.273 3.727 25 O -0.346 6.346 26 H 0.072 0.928 27 H 0.079 0.921 28 H 0.046 0.954 29 H 0.061 0.939 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.161 0.839 33 H 0.096 0.904 34 H 0.104 0.896 35 H 0.136 0.864 36 H 0.106 0.894 37 H 0.178 0.822 38 H 0.179 0.821 39 H 0.168 0.832 40 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -12.203 15.243 6.757 20.662 hybrid contribution 1.145 -0.462 -1.262 1.765 sum -11.058 14.781 5.495 19.260 Atomic orbital electron populations 1.21543 0.95561 1.00199 1.01002 1.21785 0.95470 0.97573 1.00232 1.19276 0.90887 0.91872 0.88873 0.97342 1.21980 0.92127 1.41998 1.02347 0.93635 1.25586 0.95320 0.94233 1.01607 1.70075 1.11113 1.45812 1.30317 0.86497 0.81599 0.78120 0.80400 1.20798 1.20860 1.15572 1.60531 1.58477 1.03398 1.06567 1.22073 0.94733 0.90379 0.99598 0.91842 1.21660 1.03425 0.95205 0.94038 1.20552 0.94978 0.94159 1.02257 1.20343 0.94731 0.94223 0.94346 1.21482 0.98596 0.93700 1.01304 1.21771 0.93249 1.01310 0.93730 1.21433 1.01455 0.92584 1.00294 1.21479 0.94851 0.96629 0.97254 1.20455 0.99538 0.94728 1.04382 1.23309 0.87962 0.87849 0.73555 1.90427 1.50326 1.59589 1.34306 0.92824 0.92061 0.95411 0.93931 0.92830 0.92572 0.83902 0.90428 0.89577 0.86417 0.89386 0.82226 0.82097 0.83170 0.86495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.10 9.84 71.98 0.71 -4.39 16 2 C -0.11 -5.12 4.98 30.59 0.15 -4.97 16 3 C 0.20 9.71 1.29 44.17 0.06 9.77 16 4 H 0.01 0.45 6.57 -2.39 -0.02 0.44 16 5 C -0.55 -30.33 8.54 25.60 0.22 -30.12 16 6 H 0.05 2.71 8.01 -2.91 -0.02 2.69 16 7 C 0.03 1.86 5.37 84.66 0.45 2.32 16 8 N -0.93 -57.37 13.96 21.45 0.30 -57.07 16 9 Si 0.91 45.12 25.87 68.60 1.77 46.90 16 10 H -0.28 -13.96 7.11 99.48 0.71 -13.25 16 11 H -0.28 -13.72 7.11 99.48 0.71 -13.01 16 12 H -0.23 -11.01 5.31 99.48 0.53 -10.48 16 13 N -0.66 -27.25 5.02 -475.13 -2.38 -29.63 16 14 C 0.04 1.60 2.51 44.56 0.11 1.71 16 15 H 0.06 2.68 7.46 -2.39 -0.02 2.66 16 16 C -0.11 -2.78 5.18 30.62 0.16 -2.62 16 17 C -0.08 -1.69 5.70 29.64 0.17 -1.52 16 18 C -0.04 -0.83 5.78 -19.61 -0.11 -0.95 16 19 C -0.13 -2.21 9.65 22.29 0.22 -2.00 16 20 C -0.08 -1.25 10.03 22.32 0.22 -1.03 16 21 C -0.14 -2.65 10.04 22.23 0.22 -2.43 16 22 C -0.08 -2.25 9.61 22.56 0.22 -2.03 16 23 C -0.19 -5.67 5.82 -20.11 -0.12 -5.79 16 24 C 0.40 14.80 6.76 28.40 0.19 14.99 16 25 O -0.47 -20.56 16.58 -2.95 -0.05 -20.61 16 26 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 27 H 0.06 2.51 7.54 -2.39 -0.02 2.49 16 28 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.04 2.02 4.69 -2.39 -0.01 2.01 16 30 H 0.05 2.38 8.14 -2.39 -0.02 2.36 16 31 H 0.27 15.40 8.31 -92.70 -0.77 14.62 16 32 H 0.34 13.50 8.06 -89.69 -0.72 12.77 16 33 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.09 2.18 8.08 -2.39 -0.02 2.16 16 35 H 0.12 1.60 8.10 -2.39 -0.02 1.58 16 36 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.16 1.58 8.06 -2.91 -0.02 1.56 16 38 H 0.16 1.25 8.06 -2.91 -0.02 1.23 16 39 H 0.15 2.00 8.06 -2.91 -0.02 1.98 16 40 H 0.12 3.34 7.72 -2.92 -0.02 3.31 16 Total: -1.00 -70.28 321.47 2.65 -67.63 By element: Atomic # 1 Polarization: 21.70 SS G_CDS: 0.13 Total: 21.83 kcal Atomic # 6 Polarization: -31.92 SS G_CDS: 2.87 Total: -29.05 kcal Atomic # 7 Polarization: -84.62 SS G_CDS: -2.08 Total: -86.70 kcal Atomic # 8 Polarization: -20.56 SS G_CDS: -0.05 Total: -20.61 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 1.77 Total: 46.90 kcal Total: -70.28 2.65 -67.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255164567.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.092 kcal (2) G-P(sol) polarization free energy of solvation -70.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds