Wall clock time and date at job start Mon Mar 30 2020 01:43:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52992 * 109.47393 * 2 1 4 4 C 1.52996 * 109.47131 * 120.00843 * 2 1 3 5 5 N 1.46497 * 109.47419 * 65.31818 * 4 2 1 6 6 C 1.46503 * 119.99877 * 264.41830 * 5 4 2 7 7 C 1.50698 * 109.47232 * 276.12330 * 6 5 4 8 8 H 1.08002 * 119.99998 * 359.97438 * 7 6 5 9 9 C 1.37881 * 119.99845 * 180.02562 * 7 6 5 10 10 N 1.31515 * 120.00070 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 119.99774 * 179.97438 * 9 7 6 12 12 H 1.48497 * 109.46969 * 90.00109 * 11 9 7 13 13 H 1.48505 * 109.47064 * 209.99934 * 11 9 7 14 14 H 1.48502 * 109.47270 * 329.99950 * 11 9 7 15 15 C 1.34771 * 120.00030 * 84.41914 * 5 4 2 16 16 O 1.21279 * 120.00073 * 5.25236 * 15 5 4 17 17 C 1.50701 * 119.99973 * 185.24620 * 15 5 4 18 18 F 1.39908 * 110.45330 * 51.42308 * 17 15 5 19 19 C 1.54509 * 110.51009 * 174.02082 * 17 15 5 20 20 C 1.54483 * 104.06218 * 118.78549 * 19 17 15 21 21 O 1.44427 * 104.80336 * 336.02279 * 20 19 17 22 22 C 1.44433 * 105.27428 * 40.51080 * 21 20 19 23 23 H 1.08997 * 109.47031 * 300.00064 * 1 2 3 24 24 H 1.09002 * 109.46927 * 59.99225 * 1 2 3 25 25 H 1.08995 * 109.47249 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46904 * 240.00419 * 2 1 3 27 27 H 1.08998 * 109.47533 * 180.02562 * 3 2 1 28 28 H 1.09002 * 109.47717 * 300.00292 * 3 2 1 29 29 H 1.09002 * 109.46753 * 60.00326 * 3 2 1 30 30 H 1.09002 * 109.46670 * 305.31506 * 4 2 1 31 31 H 1.08998 * 109.47180 * 185.32046 * 4 2 1 32 32 H 1.09000 * 109.47406 * 36.12248 * 6 5 4 33 33 H 1.09002 * 109.47132 * 156.11967 * 6 5 4 34 34 H 0.96996 * 119.99638 * 180.02562 * 10 9 7 35 35 H 1.08994 * 110.51392 * 237.42969 * 19 17 15 36 36 H 1.09003 * 110.51381 * 0.14654 * 19 17 15 37 37 H 1.09007 * 110.37182 * 94.84911 * 20 19 17 38 38 H 1.08998 * 110.37557 * 217.19357 * 20 19 17 39 39 H 1.08998 * 110.37324 * 200.65965 * 22 21 20 40 40 H 1.08997 * 110.37408 * 78.31697 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7214 1.2491 5 7 1.6590 -2.1346 1.1867 6 6 0.4418 -2.5955 1.8591 7 6 0.7413 -2.8647 3.3113 8 1 1.7387 -2.7085 3.6949 9 6 -0.2578 -3.3114 4.1499 10 7 -1.4721 -3.5030 3.6824 11 14 0.1136 -3.6458 5.9498 12 1 -0.1166 -2.4101 6.7406 13 1 -0.7774 -4.7248 6.4470 14 1 1.5301 -4.0683 6.0928 15 6 2.4284 -3.0107 0.5107 16 8 3.4839 -2.6496 0.0350 17 6 1.9771 -4.4391 0.3460 18 9 0.6720 -4.4846 -0.1562 19 6 2.9421 -5.2079 -0.5840 20 6 3.5009 -6.3391 0.3074 21 8 3.3543 -5.8506 1.6586 22 6 2.0669 -5.1966 1.6892 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5140 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 3.1300 1.4424 -0.0005 28 1 1.6768 1.9564 -0.8899 29 1 1.6768 1.9562 0.8900 30 1 1.6010 -0.2656 2.1366 31 1 3.1258 -0.6396 1.2980 32 1 -0.3282 -1.8277 1.7832 33 1 0.0894 -3.5115 1.3849 34 1 -2.1750 -3.8168 4.2725 35 1 2.4025 -5.6235 -1.4349 36 1 3.7471 -4.5556 -0.9226 37 1 2.9220 -7.2523 0.1692 38 1 4.5520 -6.5171 0.0803 39 1 2.0164 -4.4970 2.5235 40 1 1.2681 -5.9345 1.7628 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261217066.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:21 Heat of formation + Delta-G solvation = -136.449933 kcal Electronic energy + Delta-G solvation = -23214.233141 eV Core-core repulsion = 19750.384713 eV Total energy + Delta-G solvation = -3463.848428 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 273.153 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -47.53991 -39.65927 -38.15479 -36.14934 -34.11281 -32.39021 -31.28380 -28.97410 -27.63386 -26.78705 -25.85982 -23.34309 -22.81679 -21.64404 -19.97881 -18.68608 -16.87214 -16.67448 -16.45100 -16.12971 -15.36587 -14.88001 -14.55649 -14.52009 -14.45590 -14.01041 -13.64204 -13.20318 -12.95674 -12.73174 -12.48057 -12.35231 -12.01144 -11.65577 -11.62450 -11.36193 -11.28279 -11.12791 -10.99296 -10.93471 -10.71932 -10.53767 -10.34488 -10.26937 -10.08216 -9.70768 -9.63623 -9.04027 -8.58551 -7.79895 -6.24152 -4.32065 3.02669 3.20096 3.28100 3.32168 3.62914 4.23267 4.27699 4.51699 4.74772 4.91763 5.07308 5.15091 5.24093 5.28602 5.31757 5.44990 5.57174 5.80726 5.86686 5.88697 5.94389 6.00331 6.11180 6.16753 6.22095 6.25305 6.33976 6.40078 6.57381 6.59130 6.71733 6.79975 7.02530 7.21907 7.44316 7.68308 7.97674 8.19509 8.63824 8.81262 9.34495 10.81666 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.011726 B = 0.010214 C = 0.006442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2387.294804 B = 2740.637883 C = 4345.668237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.111 4.111 3 C -0.141 4.141 4 C 0.124 3.876 5 N -0.579 5.579 6 C 0.212 3.788 7 C -0.547 4.547 8 H 0.064 0.936 9 C 0.070 3.930 10 N -0.882 5.882 11 Si 0.893 3.107 12 H -0.278 1.278 13 H -0.284 1.284 14 H -0.270 1.270 15 C 0.509 3.491 16 O -0.554 6.554 17 C 0.080 3.920 18 F -0.181 7.181 19 C -0.173 4.173 20 C 0.046 3.954 21 O -0.366 6.366 22 C 0.023 3.977 23 H 0.055 0.945 24 H 0.045 0.955 25 H 0.064 0.936 26 H 0.067 0.933 27 H 0.053 0.947 28 H 0.051 0.949 29 H 0.055 0.945 30 H 0.083 0.917 31 H 0.070 0.930 32 H 0.043 0.957 33 H 0.060 0.940 34 H 0.267 0.733 35 H 0.090 0.910 36 H 0.109 0.891 37 H 0.060 0.940 38 H 0.094 0.906 39 H 0.147 0.853 40 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.326 0.577 -6.764 8.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.130 4.130 3 C -0.199 4.199 4 C 0.001 3.999 5 N -0.307 5.307 6 C 0.092 3.908 7 C -0.585 4.585 8 H 0.082 0.918 9 C -0.135 4.135 10 N -0.519 5.519 11 Si 0.720 3.280 12 H -0.204 1.204 13 H -0.209 1.209 14 H -0.195 1.195 15 C 0.294 3.706 16 O -0.434 6.434 17 C 0.058 3.942 18 F -0.162 7.162 19 C -0.211 4.211 20 C -0.031 4.031 21 O -0.284 6.284 22 C -0.054 4.054 23 H 0.074 0.926 24 H 0.064 0.936 25 H 0.083 0.917 26 H 0.085 0.915 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.102 0.898 31 H 0.088 0.912 32 H 0.061 0.939 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.108 0.892 36 H 0.127 0.873 37 H 0.079 0.921 38 H 0.112 0.888 39 H 0.165 0.835 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 4.757 0.697 -6.766 8.300 hybrid contribution -0.425 -0.200 0.824 0.948 sum 4.333 0.497 -5.942 7.371 Atomic orbital electron populations 1.21889 0.94895 1.02617 1.00923 1.21480 0.96456 0.95910 0.99184 1.21742 1.00787 0.95843 1.01488 1.21424 1.00113 0.80824 0.97565 1.48192 1.26189 1.07196 1.49131 1.20001 0.80931 0.97680 0.92148 1.21452 0.96626 1.46352 0.94047 0.91823 1.24930 0.94783 0.94871 0.98884 1.69929 1.01364 1.44592 1.36063 0.86566 0.78693 0.78192 0.84580 1.20431 1.20936 1.19472 1.20194 0.84545 0.86684 0.79141 1.90585 1.23258 1.78530 1.51019 1.22330 0.79324 0.95845 0.96696 1.92845 1.37658 1.97335 1.88332 1.23521 1.00478 0.98458 0.98632 1.23380 1.01722 0.95612 0.82402 1.89192 1.36398 1.74596 1.28229 1.24557 0.86127 0.97008 0.97722 0.92576 0.93625 0.91738 0.91463 0.92815 0.92943 0.92619 0.89843 0.91159 0.93879 0.92232 0.92364 0.89170 0.87285 0.92140 0.88815 0.83518 0.90267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.33 8.35 37.16 0.31 -2.02 16 2 C -0.11 -1.78 3.08 -90.62 -0.28 -2.06 16 3 C -0.14 -1.84 9.19 37.15 0.34 -1.50 16 4 C 0.12 2.29 4.84 -4.05 -0.02 2.28 16 5 N -0.58 -12.17 2.20 -175.06 -0.39 -12.56 16 6 C 0.21 4.93 3.85 -5.19 -0.02 4.91 16 7 C -0.55 -13.67 6.93 -34.44 -0.24 -13.91 16 8 H 0.06 1.63 7.71 -52.49 -0.40 1.22 16 9 C 0.07 1.78 5.46 -17.82 -0.10 1.69 16 10 N -0.88 -23.61 13.29 55.43 0.74 -22.87 16 11 Si 0.89 20.10 29.54 -169.99 -5.02 15.08 16 12 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 13 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 14 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 15 C 0.51 10.82 6.69 -10.99 -0.07 10.75 16 16 O -0.55 -12.33 14.94 5.56 0.08 -12.25 16 17 C 0.08 1.56 1.17 -90.20 -0.11 1.45 16 18 F -0.18 -3.66 14.55 2.25 0.03 -3.63 16 19 C -0.17 -2.76 6.51 -25.16 -0.16 -2.92 16 20 C 0.05 0.68 7.63 37.94 0.29 0.97 16 21 O -0.37 -6.95 11.65 -35.23 -0.41 -7.36 16 22 C 0.02 0.45 6.17 37.93 0.23 0.69 16 23 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 24 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 25 H 0.06 1.17 6.21 -51.93 -0.32 0.85 16 26 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 27 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.08 1.54 8.03 -51.93 -0.42 1.12 16 31 H 0.07 1.31 7.53 -51.93 -0.39 0.92 16 32 H 0.04 1.05 6.38 -51.93 -0.33 0.72 16 33 H 0.06 1.46 4.63 -51.93 -0.24 1.22 16 34 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 35 H 0.09 1.23 8.06 -51.93 -0.42 0.81 16 36 H 0.11 1.82 6.52 -51.93 -0.34 1.48 16 37 H 0.06 0.77 8.14 -51.92 -0.42 0.35 16 38 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 39 H 0.15 3.32 4.67 -51.93 -0.24 3.08 16 40 H 0.08 1.53 8.12 -51.93 -0.42 1.10 16 LS Contribution 318.66 15.07 4.80 4.80 Total: -1.00 -27.73 318.66 -6.03 -33.76 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: -6.04 Total: 4.72 kcal Atomic # 6 Polarization: 0.13 SS G_CDS: 0.18 Total: 0.31 kcal Atomic # 7 Polarization: -35.78 SS G_CDS: 0.35 Total: -35.43 kcal Atomic # 8 Polarization: -19.28 SS G_CDS: -0.33 Total: -19.61 kcal Atomic # 9 Polarization: -3.66 SS G_CDS: 0.03 Total: -3.63 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.08 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -27.73 -6.03 -33.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261217066.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.692 kcal (2) G-P(sol) polarization free energy of solvation -27.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds